Aliases for HELZ2 Gene
Aliases for HELZ2 Gene
- Helicase With Zinc Finger 2 2 3 5
- Helicase With Zinc Finger 2, Transcriptional Coactivator 2 3 4
- Peroxisomal Proliferator-Activated Receptor A-Interacting Complex 285 KDa Protein 3 4
- PPAR-Gamma DNA-Binding Domain-Interacting Protein 1 3 4
- PPAR-Alpha-Interacting Complex Protein 285 3 4
- PPARG-DBD-Interacting Protein 1 2 3
- ATP-Dependent Helicase PRIC285 3 4
- PRIC285 3 4
- PDIP1 3 4
- Peroxisomal Proliferator-Activated Receptor Alpha-Interacting Cofactor Complex, 285 KD Subunit 3
- Peroxisomal Proliferator Activated Receptor A Interacting Complex 285 2
External Ids for HELZ2 Gene
- HGNC: 30021
- Entrez Gene: 85441
- Ensembl: ENSG00000130589
- OMIM: 611265
- UniProtKB: Q9BYK8
Previous GeneCards Identifiers for HELZ2 Gene
- GC20M062190
Summaries for HELZ2 Gene
-
The protein encoded by this gene is a nuclear transcriptional co-activator for peroxisome proliferator activated receptor alpha. The encoded protein contains a zinc finger and is a helicase that appears to be part of the peroxisome proliferator activated receptor alpha interacting complex. This gene is a member of the DNA2/NAM7 helicase gene family. Alternatively spliced transcript variants encoding different isoforms have been found for this gene. [provided by RefSeq, Jul 2008]
GeneCards Summary for HELZ2 Gene
HELZ2 (Helicase With Zinc Finger 2) is a Protein Coding gene. Among its related pathways are Mitochondrial Gene Expression and Regulation of lipid metabolism by Peroxisome proliferator-activated receptor alpha (PPARalpha). GO annotations related to this gene include poly(A) RNA binding and ligand-dependent nuclear receptor transcription coactivator activity. An important paralog of this gene is UPF1.
UniProtKB/Swiss-Prot for HELZ2 Gene
-
Helicase that acts as a transcriptional coactivator for a number of nuclear receptors including PPARA, PPARG, THRA, THRB and RXRA.
No data available for CIViC summary , Tocris Summary , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for HELZ2 Gene
Genomics for HELZ2 Gene
Regulatory Elements for HELZ2 Gene
Regulatory Element Products
Genomic Location for HELZ2 Gene
- Chromosome:
- 20
- Start:
- 63,558,086 bp from pter
- End:
- 63,574,239 bp from pter
- Size:
- 16,154 bases
- Orientation:
- Minus strand
Genomic View for HELZ2 Gene
- Cytogenetic band:
-
- 20q13.33 by Ensembl
- 20q13.33 by Entrez Gene
- 20q13.33 by HGNC
Genomic Neighborhood
• Exon Structure
• Gene Density
RefSeq DNA sequence for HELZ2 Gene
Proteins for HELZ2 Gene
-
Protein details for HELZ2 Gene (UniProtKB/Swiss-Prot)
- Protein Symbol:
- Q9BYK8-HELZ2_HUMAN
- Recommended name:
- Helicase with zinc finger domain 2
- Protein Accession:
- Q9BYK8
- Q3C2G2
- Q4VXQ1
- Q8TEF3
- Q96ND3
- Q9C094
Protein attributes for HELZ2 Gene
- Size:
- 2649 amino acids
- Molecular mass:
- 294651 Da
- Quaternary structure:
-
- Interacts with PPARA (via DNA-binding domain) and PPARG; the interaction stimulates the transcriptional activity of PPARA and PPARG. Interacts with THRAP3; the interaction is direct and HELZ2 and THRAP3 synergistically enhance the transcriptional activity of PPARG. It is probably part of the peroxisome proliferator activated receptor alpha interacting complex (PRIC).
- SequenceCaution:
-
- Sequence=BAB70969.1; Type=Frameshift; Positions=2206; Evidence={ECO:0000305};
Protein Expression for HELZ2 Gene
Post-translational modifications for HELZ2 Gene
Other Protein References for HELZ2 Gene
- ENSEMBL proteins:
- REFSEQ proteins:
Antibody Products
-
Custom Antibody ServicesOriGene Antibodies for HELZ2
-
Abcam antibodies for HELZ2
- Invitrogen Antibodies for HELZ2
- antibodies-online Antibodies for HELZ2: See all 12
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Protein Products
- Search Origene for Purified Proteins, MassSpec and Protein Over-expression Lysates for HELZ2
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- Novus Biologicals proteins for HELZ2
- Search GeneTex for Proteins for HELZ2
-
Abcam proteins for HELZ2
Assay Products
No data available for DME Specific Peptides for HELZ2 Gene
Domains & Families for HELZ2 Gene
Gene Families for HELZ2 Gene
Protein Domains for HELZ2 Gene
- InterPro:
- Blocks:
- ProtoNet:
Suggested Antigen Peptide Sequences for HELZ2 Gene
- GenScript: Design optimal peptide antigens:
Graphical View of Domain Structure for InterPro Entry
Q9BYK8UniProtKB/Swiss-Prot:
HELZ2_HUMAN :- Contains 5 Leu-Xaa-Xaa-Leu-Leu (LXXLL) motifs. These motifs are not required for interaction with PPARG.
- Belongs to the DNA2/NAM7 helicase family.
- Domain:
-
- Contains 5 Leu-Xaa-Xaa-Leu-Leu (LXXLL) motifs. These motifs are not required for interaction with PPARG.
- Family:
-
- Belongs to the DNA2/NAM7 helicase family.
Function for HELZ2 Gene
Molecular function for HELZ2 Gene
- UniProtKB/Swiss-Prot Function:
- Helicase that acts as a transcriptional coactivator for a number of nuclear receptors including PPARA, PPARG, THRA, THRB and RXRA.
Enzyme Numbers (IUBMB) for HELZ2 Gene
| GO ID | Qualified GO term | Evidence | PubMed IDs |
|---|---|---|---|
| GO:0003677 | DNA binding | IEA | -- |
| GO:0003723 | RNA binding | IDA | 22658674 |
| GO:0004386 | helicase activity | IEA | -- |
| GO:0005515 | protein binding | IPI | 16239304 |
| GO:0005524 | ATP binding | IEA | -- |
Phenotypes for HELZ2 Gene
- MGI mutant phenotypes for HELZ2:
- inferred from 1 alleles
- GenomeRNAi human phenotypes for HELZ2:
-
- Increased viability
- Increased vaccinia virus (VACV) infection
- Mildly decreased CFP-tsO45G cell surface transport
- Lamellipodia cells
- Strongly decreased CFP-tsO45G cell surface transport
- Increased G1 DNA content
- Decreased cell number
- Downregulation of Wnt pathway after Wnt3A stimulation
- Increased Nanog expression
Animal Models for HELZ2 Gene
- MGI Knock Outs for HELZ2:
-
- Helz2 tm1Tesa
Animal Model Products
- Taconic Biosciences: Generate A Custom CRISPR Mouse Model For Your Study
-
ViGene Biosciences lentiviral particle packaged cDNA for HELZ2 gene
-
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- Search ViGene Biosciences for HELZ2
CRISPR Products
-
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-
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- GenScript: Design CRISPR guide RNA sequences for HELZ2
miRNA for HELZ2 Gene
- miRTarBase miRNAs that target HELZ2
miRNA Products
- Search ViGene Biosciences for HELZ2
Inhibitory RNA Products
- Origene RNAi, siRNA, and shRNA products in human, mouse, rat for HELZ2
- Browse OriGene Inhibitory RNA Products For HELZ2
-
ViGene Biosciences ready-to-package AAV shRNAs for HELZ2 gene
Cell Line Products
-
Horizon Cell Lines for HELZ2
-
ViGene Biosciences adenoviral particle packaged cDNA for HELZ2 gene
-
ViGene Biosciences lentiviral particle packaged cDNA for HELZ2 gene
-
ViGene Biosciences ready-to-package AAV shRNAs for HELZ2 gene
Flow Cytometry Products
No data available for Human Phenotype Ontology , Transcription Factor Targets and HOMER Transcription for HELZ2 Gene
Localization for HELZ2 Gene
Subcellular locations from UniProtKB/Swiss-Prot for HELZ2 Gene
- Nucleus.
| GO ID | Qualified GO term | Evidence | PubMed IDs |
|---|---|---|---|
| GO:0005634 | nucleus | IEA | -- |
| GO:0005654 | nucleoplasm | TAS | -- |
| GO:0016020 | membrane | IDA | 19946888 |
Pathways & Interactions for HELZ2 Gene
| SuperPathway | Contained pathways | ||
|---|---|---|---|
| 1 | BMAL1-CLOCK,NPAS2 activates circadian gene expression |
.68
|
|
| 2 | Regulation of lipid metabolism by Peroxisome proliferator-activated receptor alpha (PPARalpha) | ||
| 3 | Regulation of cholesterol biosynthesis by SREBP (SREBF) | ||
| 4 | Gene Expression |
.48
|
|
| 5 | Metabolism |
.37
|
|
Pathways by source for HELZ2 Gene
Interacting Proteins for HELZ2 Gene
| GO ID | Qualified GO term | Evidence | PubMed IDs |
|---|---|---|---|
| GO:0006351 | transcription, DNA-templated | IEA | -- |
| GO:0006355 | regulation of transcription, DNA-templated | IEA | -- |
| GO:0019216 | regulation of lipid metabolic process | TAS | -- |
| GO:0044255 | cellular lipid metabolic process | TAS | -- |
| GO:0045944 | positive regulation of transcription from RNA polymerase II promoter | IDA | 16239304 |
No data available for SIGNOR curated interactions for HELZ2 Gene
Transcripts for HELZ2 Gene
mRNA/cDNA for HELZ2 Gene
- (2) REFSEQ mRNAs :
- (11) Additional mRNA sequences :
- (97) Selected AceView cDNA sequences:
- (6) Ensembl transcripts including schematic representations, and UCSC links where relevant :
Unigene Clusters for HELZ2 Gene
- Helicase with zinc finger 2, transcriptional coactivator:
- Representative Sequences:
CRISPR Products
-
OriGene CRISPR knockouts for HELZ2
-
Santa Cruz Biotechnology (SCBT) CRISPR for HELZ2
- GenScript: Design CRISPR guide RNA sequences for HELZ2
miRNA Products
- Search ViGene Biosciences for HELZ2
Inhibitory RNA Products
- Origene RNAi, siRNA, and shRNA products in human, mouse, rat for HELZ2
- Browse OriGene Inhibitory RNA Products For HELZ2
-
ViGene Biosciences ready-to-package AAV shRNAs for HELZ2 gene
Flow Cytometry Products
| ExUns: | 1 | ^ | 2 | ^ | 3 | ^ | 4 | ^ | 5 | ^ | 6 | ^ | 7 | ^ | 8 | ^ | 9 | ^ | 10 | ^ | 11a | · | 11b | ^ | 12 | ^ | 13 | ^ | 14 | ^ | 15a | · | 15b | ^ | 16 | ^ | 17a | · | 17b | ^ | 18 | ^ | 19a | · | 19b | ^ | 20a | · | 20b | ^ | 21 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| SP1: | - | ||||||||||||||||||||||||||||||||||||||||||||||||||
| SP2: | - | ||||||||||||||||||||||||||||||||||||||||||||||||||
| SP3: | |||||||||||||||||||||||||||||||||||||||||||||||||||
| SP4: | - | - | - | - | - | - | |||||||||||||||||||||||||||||||||||||||||||||
| SP5: | |||||||||||||||||||||||||||||||||||||||||||||||||||
| SP6: | |||||||||||||||||||||||||||||||||||||||||||||||||||
| SP7: | |||||||||||||||||||||||||||||||||||||||||||||||||||
| SP8: | |||||||||||||||||||||||||||||||||||||||||||||||||||
| SP9: | |||||||||||||||||||||||||||||||||||||||||||||||||||
| SP10: | |||||||||||||||||||||||||||||||||||||||||||||||||||
| SP11: |
Expression for HELZ2 Gene
mRNA expression in embryonic tissues and stem cells from LifeMap Discovery
-
Adipose (Muscoskeletal System)
- Mesenchymal Stem Cells Subcutaneous White Adipose
-
Mesenchymal Stem Cells
- Mesenchymal Stem Cells Subcutaneous White Adipose
-
Liver (Hepatobiliary System)
mRNA differential expression in normal tissues according to GTEx for HELZ2 Gene
Integrated Proteomics: protein expression in normal tissues and cell lines from ProteomicsDB, PaxDb, MaxQB, and MOPED for HELZ2 Gene
NURSA nuclear receptor signaling pathways regulating expression of HELZ2 Gene:
HELZ2SOURCE GeneReport for Unigene cluster for HELZ2 Gene:
Hs.517180mRNA Expression by UniProt/SwissProt for HELZ2 Gene:
Q9BYK8-HELZ2_HUMANEvidence on tissue expression from TISSUES for HELZ2 Gene
- Liver(4.2)
- Spleen(4.2)
- Nervous system(4.1)
Primer Products
-
OriGene qPCR primer pairs for HELZ2
No data available for Protein tissue co-expression partners and Phenotype-based relationships between genes and organs from Gene ORGANizer for HELZ2 Gene
Orthologs for HELZ2 Gene
This gene was present in the common ancestor of animals and fungi.
| Organism | Taxonomy | Gene | Similarity | Type | Details |
|---|---|---|---|---|---|
| chimpanzee (Pan troglodytes) |
Mammalia | HELZ2 34 35 |
|
||
| dog (Canis familiaris) |
Mammalia | HELZ2 34 35 |
|
||
| rat (Rattus norvegicus) |
Mammalia | Helz2 34 |
|
||
| mouse (Mus musculus) |
Mammalia | Helz2 34 16 35 |
|
||
| platypus (Ornithorhynchus anatinus) |
Mammalia | -- 35 |
|
OneToMany | |
| -- 35 |
|
OneToMany | |||
| oppossum (Monodelphis domestica) |
Mammalia | HELZ2 35 |
|
OneToOne | |
| chicken (Gallus gallus) |
Aves | HELZ2 34 35 |
|
||
| lizard (Anolis carolinensis) |
Reptilia | HELZ2 35 |
|
OneToOne | |
| tropical clawed frog (Silurana tropicalis) |
Amphibia | LOC101733680 34 |
|
||
| zebrafish (Danio rerio) |
Actinopterygii | LOC562461 34 |
|
||
| HELZ2 (1 of 3) 35 |
|
OneToMany | |||
| helz2 35 |
|
OneToMany | |||
| HELZ2 (2 of 3) 35 |
|
OneToMany | |||
| rainbow trout (Oncorhynchus mykiss) |
Actinopterygii | Omy.71 34 |
|
||
| baker's yeast (Saccharomyces cerevisiae) |
Saccharomycetes | NAM7 35 |
|
OneToMany |
- Species where no ortholog for HELZ2 was found in the sources mined by GeneCards:
-
- A. gosspyii yeast (Ashbya gossypii)
- Actinobacteria (Mycobacterium tuberculosis)
- African clawed frog (Xenopus laevis)
- African malaria mosquito (Anopheles gambiae)
- Alicante grape (Vitis vinifera)
- alpha proteobacteria (Wolbachia pipientis)
- amoeba (Dictyostelium discoideum)
- Archea (Pyrococcus horikoshii)
- barley (Hordeum vulgare)
- beta proteobacteria (Neisseria meningitidis)
- bread mold (Neurospora crassa)
- Chromalveolata (Phytophthora infestans)
- common water flea (Daphnia pulex)
- corn (Zea mays)
- cow (Bos Taurus)
- E. coli (Escherichia coli)
- filamentous fungi (Aspergillus nidulans)
- Firmicute bacteria (Streptococcus pneumoniae)
- fission yeast (Schizosaccharomyces pombe)
- fruit fly (Drosophila melanogaster)
- green algae (Chlamydomonas reinhardtii)
- honey bee (Apis mellifera)
- K. lactis yeast (Kluyveromyces lactis)
- loblloly pine (Pinus taeda)
- malaria parasite (Plasmodium falciparum)
- medicago trunc (Medicago Truncatula)
- moss (Physcomitrella patens)
- orangutan (Pongo pygmaeus)
- pig (Sus scrofa)
- rice (Oryza sativa)
- rice blast fungus (Magnaporthe grisea)
- schistosome parasite (Schistosoma mansoni)
- sea anemone (Nematostella vectensis)
- sea squirt (Ciona intestinalis)
- sea squirt (Ciona savignyi)
- sea urchin (Strongylocentrotus purpuratus)
- sorghum (Sorghum bicolor)
- soybean (Glycine max)
- stem rust fungus (Puccinia graminis)
- sugarcane (Saccharum officinarum)
- thale cress (Arabidopsis thaliana)
- tomato (Lycopersicon esculentum)
- toxoplasmosis (Toxoplasma gondii)
- Trichoplax (Trichoplax adhaerens)
- wheat (Triticum aestivum)
- worm (Caenorhabditis elegans)
Paralogs for HELZ2 Gene
Variants for HELZ2 Gene
| SNP ID | Clin | Chr 20 pos | Sequence Context | AA Info | Type |
|---|---|---|---|---|---|
| rs1000070693 | -- | 63,566,417(+) | GCCTA(A/G)GTCCC | reference, synonymous-codon | |
| rs1000230439 | -- | 63,558,447(+) | CAGGC(A/G)GTGAT | utr-variant-3-prime | |
| rs1000364542 | -- | 63,562,883(+) | GCCCC(C/T)GCGGC | reference, missense | |
| rs1000568893 | -- | 63,564,420(+) | CGGGT(A/G)CTGCC | reference, missense | |
| rs1000708819 | -- | 63,559,958(+) | CCGCG(C/T)GACAG | reference, missense |
Relevant External Links for HELZ2 Gene
No data available for Polymorphic Variants from UniProtKB/Swiss-Prot for HELZ2 Gene
Disorders for HELZ2 Gene
Relevant External Links for HELZ2
- Atlas of Genetics and Cytogenetics in Oncology and Haematology:
- HELZ2
No disorders were found for HELZ2 Gene.
No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for HELZ2 Gene
Publications for HELZ2 Gene
- Isolation and characterization of a transcriptional cofactor and its novel isoform that bind the DNA-binding domain of peroxisome proliferator-activated receptor gamma. (PMID: 16239304) Tomaru T. … Mori M. (Endocrinology 2006) 2 3 4 22 64
- Identification of a transcriptionally active peroxisome proliferator- activated receptor alpha-interacting cofactor complex in rat liver and characterization of PRIC285 as a coactivator. (PMID: 12189208) Surapureddi S. … Reddy J.K. (Proc. Natl. Acad. Sci. U.S.A. 2002) 2 3 4 64
- Prediction of the coding sequences of unidentified human genes. XIX. The complete sequences of 100 new cDNA clones from brain which code for large proteins in vitro. (PMID: 11214970) Nagase T. … Ohara O. (DNA Res. 2000) 2 3 4 64
- THRAP3 interacts with HELZ2 and plays a novel role in adipocyte differentiation. (PMID: 23525231) Katano-Toki A. … Mori M. (Mol. Endocrinol. 2013) 3 4 64
- Complete sequencing and characterization of 21,243 full-length human cDNAs. (PMID: 14702039) Ota T. … Sugano S. (Nat. Genet. 2004) 3 4 64
Products for HELZ2 Gene
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- Novus Biologicals proteins for HELZ2
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- Abcam antibodies for HELZ2
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- Mammalian expression: PiggyBac
- Mammalian Tet-on expression: plasmid
- Mammalian conditional (Cre-Lox): plasmid and PiggyBac
- Mammalian shRNA knockdown: lentiviral, adenoviral, AAV, and PiggyBac
- CRISPR: plasmid gRNA, lentiviral gRNA, and donor plasmid
- Bacterial expression: pET, pBAD, and pCS
- Yeast expression
Sources for HELZ2 Gene
- (1) GeneCards
- (2) HGNC
- (3) EntrezGene
- (4) Swiss-Prot
- (5) Ensembl
- (6) OMIM
- (7) GeneLoc
- (8) Gene Wiki
- (9) UCSC
- (10) PhosphoSitePlus
- (11) GO
- (12) TrEMBL
- (13) InterPro
- (14) ProtoNet
- (15) Blocks
- (16) MGI
- (17) IUBMB
- (18) KEGG
- (19) MINT
- (20) STRING
- (21) IntAct
- (22) Novoseek
- (23) PharmGKB
- (24) DrugBank
- (25) HMDB
- (26) UniGene
- (27) AceView
- (28) RNAdb
- (29) ASD
- (30) ECgene
- (31) GeneAnnot
- (32) CGAP SAGE
- (33) SOURCE
- (34) HomoloGene
- (35) PanEnsembl
- (36) euGenes
- (37) SGD
- (38) FlyBase
- (39) WormBase
- (40) Pseudogene
- (41) DGV
- (42) dbSNP
- (43) GenAtlas
- (44) GeneTests
- (45) HGMD
- (46) GAD
- (47) LSDB
- (48) BGMUT
- (49) HuGE
- (50) eBioscience
- (51) Atlas
- (52) Cell Signaling Technology
- (53) GenBank
- (54) H-invDB
- (55) HORDE
- (56) HUGE
- (57) IMGT
- (58) Leiden
- (59) MILLIPORE
- (60) miRBase
- (61) DME
- (62) NCBI
- (63) OriGene
- (64) PubMed
- (65) R&D Systems
- (66) TGDB
- (67) Tocris
- (68) Abcam
- (69) Novus
- (70) ProSpec
- (71) Sino Biological
- (72) GenScript
- (73) Qiagen
- (74) Cloud-Clone Corp.
- (75) Enzo Life Sciences
- (76) OCA
- (77) Proteopedia
- (78) MOPED
- (79) SPIRE
- (80) neXtProt
- (81) Reactome
- (82) GeneGo (Thomson Reuters)
- (83) fRNAdb
- (84) DISEASES
- (85) SIMAP
- (86) GenomeRNAi
- (87) LifeMap
- (88) miRTarBase
- (89) MalaCards
- (90) Invitrogen
- (91) BitterDB
- (92) Vector BioLabs
- (93) ESI-BIO
- (94) RefSeq
- (95) BioSystems
- (96) MaxQB
- (97) IUPHAR
- (98) BioGPS
- (99) Illumina
- (100) COMPARTMENTS
- (101) HOMER
- (102) PaxDb
- (103) ApexBio
- (104) Addgene
- (105) antibodies-online
- (106) CYP
- (107) NONCODE
- (108) SwitchGear Genomics
- (109) TreeFam
- (110) PathCards
- (111) GeneReviews
- (112) GeneTex
- (113) Taconic Biosciences
- (114) GTEx
- (115) ProteomicsDB
- (116) SCBT
- (117) DGIdb
- (118) ClinicalTrials
- (119) FDA Approved Drugs
- (120) RVIS
- (121) SIGNOR
- (122) diseasecard
- (123) NIH Rare Diseases
- (124) Orphanet
- (125) UMLS
- (126) GTR
- (127) Disease Ontology
- (128) Genetics Home Reference
- (129) MeSH
- (130) MedlinePlus
- (131) CDC
- (132) NINDS
- (133) NCBI Bookshelf
- (134) ClinVar
- (135) Gene Damage Index
- (136) ViGene Biosciences
- (137) HPO
- (138) UDN
- (139) VISTA
- (140) FANTOM5
- (141) ENCODE
- (142) ProSci
- (143) Horizon
- (144) NURSA
- (145) IID
- (146) Cyagen
- (147) VectorBuilder
- (148) SNPedia
- (149) BRCA Exchange
- (150) St John's Lab
- (151) CIViC
- (152) ProteoGenix
- (153) dbSUPER
- (154) TISSUES
- (155) Gene ORGANizer




