HELT Gene
protein-coding GIFtS : 40
GCID: GC04 P185940
helt bHLH transcription factor (Previous names: Hey-like transcription factor (zebrafish), HES/HEY-like... )
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Aliasesfor HELT gene
(According to
1 HGNC ,
2 Entrez Gene ,
3 UniProtKB/Swiss-Prot ,
4 UniProtKB/TrEMBL , 5 OMIM , 6 GeneLoc ,
7 Ensembl ,
8 DME ,
9 miRBase ,
and/or 10 fRNAdb )About This Section Aliases Helt BHLH Transcription Factor 1 2 Hey-Like Transcription Factor (Zebrafish)1 HES/HEY-Like Transcription Factor1 2 3 Heslike2 HCM12281 2 Hairy And Enhancer Of Split-Related Protein HELT2 HESL1 2 Hey-Like Transcription Factor2 Mgn1 2 Hey-Like Transcriptional Repressor2 BHLHb441 Megane BHLH Factor2 MEGANE1
Export aliases for HELT gene to outside databases Previous GC identifers: GC04P186635 GC04P186315 GC04P186177 GC04P181693
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Summariesfor HELT gene (According to Entrez Gene ,
Tocris Bioscience ,
Wikipedia's
Gene Wiki ,
PharmGKB ,
UniProtKB/Swiss-Prot ,
and/or
UniProtKB/TrEMBL )
About This Section UniProtKB/Swiss-Prot: HELT_HUMAN, A6NFD8 Function : Transcriptional repressor which binds preferentially to the canonical E box sequence 5'-CACGCG-3' (Bysimilarity)
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Genomic Viewsfor HELT gene
(According to
GeneLoc and/or
HGNC , and/or
Entrez Gene (NCBI build 37) ,
and/or miRBase ,
Genomic Views according to
UCSC (hg19) and
Ensembl (release 69) ,
Regulatory elements and Epigenetics data according to
QIAGEN ,
SABiosciences , and/or
SwitchGear Genomics )About This Section RefSeq DNA sequence: NC_000004.11 NC_018915.1 NT_016354.19 Regulatory elements: SABiosciences Regulatory transcription factor binding sites in the HELT gene promoter: GATA-3 GATA-1 GATA-2 HEN1 Cart-1 SEF-1 (1) Chx10 En-1 ATF6 Other transcription factors Search SABiosciences Chromatin IP Primers for HELT Epigenetics: QIAGEN PyroMark CpG Assay predesigned Pyrosequencing DNA Methylation assays in human , mouse , rat HELT
Genomic Location: Genomic View : UCSC Golden Path with GeneCards custom track Entrez Gene cytogenetic band: 4q35.1 Ensembl cytogenetic band: 4q35.1 HGNC cytogenetic band: 4q35.1 HELT Gene in genomic location: bands according to Ensembl, locations according to
(and/or Entrez Gene and/or Ensembl if different) GeneLoc information about chromosome 4 GeneLoc Exon Structure
GeneLoc location for GC04P185940: view genomic region
(about GC identifiers )
Start:
185,939,995 bp from pter
End:
185,941,958 bp from pter
Size:
1,964 bases
Orientation:
plus strand
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Proteinsfor HELT gene
(According to
1 UniProtKB ,
HORDE ,
neXtProt ,
Ensembl ,
and/or Reactome ,
Modification sites according to 2 PhosphoSitePlus ,
Specific Peptides from DME ,
Protein expression images according to data from SPIRE MOPED and PaxDb ,
RefSeq according to NCBI ,
PDB rendering according to OCA and/or Proteopedia ,
Recombinant Proteins
from
EMD Millipore ,
R&D Systems ,
GenScript ,
Enzo Life Sciences ,
OriGene ,
Novus Biologicals ,
Sino Biological ,
ProSpec , and/or
Uscn ,
Biochemical Assays by
EMD Millipore ,
R&D Systems ,
OriGene ,
GenScript ,
Cell Signaling Technology ,
Enzo Life Sciences , and/or
Uscn ,
Ontologies according to Gene
Ontology Consortium 01 Mar 2013 and
Entrez Gene ,
Antibodies by
EMD Millipore ,
R&D Systems ,
GenScript ,
Cell Signaling Technology ,
OriGene ,
Novus Biologicals ,
Thermo Fisher Scientific ,
Abcam , and/or
Uscn )
About This Section UniProtKB/Swiss-Prot: HELT_HUMAN, A6NFD8 (See
protein sequence )Recommended Name: Hairy and enhancer of split-related protein HELT Size : 327 amino acids; 35816 Da
Subunit : Self-associates. Interacts with HES5 and HEY2 (By similarity)
Subcellular location : Nucleus (By similarity)
Secondary accessions : B2RTS5 B7ZMI8Alternative splicing : 2 isoforms : A6NFD8-1 A6NFD8-2 (No experimental confirmation available)Explore the universe of human proteins at neXtProt for HELT: NX_A6NFD8 Post-translational modifications:
View modification sites using PhosphoSitePlus 2 View neXtProt modification sites for NX_A6NFD8 HELT Protein expression data from MOPED and PaxDb : About this image REFSEQ proteins: NP_001025058.1 ENSEMBL proteins: ENSP00000422140 ENSP00000426033 ENSP00000343464 Human Recombinant Protein Products for HELT: Gene Ontology (GO): 2 cellular component terms (GO ID links to tree view) : About this table
GO ID Qualified GO term Evidence PubMed IDs GO:0005634 nucleus
-- -- GO:0005667 transcription factor complex
IEA --
HELT for ontologies About GeneDecksing HELT Antibody Products: Assay Products for HELT:
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Protein
Domains / Familiesfor HELT gene (According to InterPro , ProtoNet ,
UniProtKB , and/or BLOCKS ,
Sets of similar genes according to GeneDecks )
About This Section
HELT for domains About GeneDecksing 2 InterPro domains/families :
Graphical View of Domain Structure for InterPro Entry A6NFD8 ProtoNet protein and cluster: A6NFD8
UniProtKB/Swiss-Prot: HELT_HUMAN, A6NFD8 Similarity : Belongs to the HEY familySimilarity : Contains 1 bHLH (basic helix-loop-helix) domainSimilarity : Contains 1 Orange domain
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Functionfor HELT gene
(According to 1 UniProtKB ,
Genatlas ,
LifeMap Discovery™ ,
IUBMB , and/or
2 DME ,
Human phenotypes from GenomeRNAi ,
Animal models from MGI Mar 06 2013,
inGenious Targeting Laboratory ,
bound targets from SABiosciences ,
miRNA Gene Targets from miRTarBase ,
shRNA from
OriGene ,
Sirion Biotech ,
RNAi from
EMD Millipore ,
siRNAs from
OriGene ,
QIAGEN ,
microRNA from QIAGEN ,
Gene Editing from DNA2.0 ,
Sirion Biotech ,
Clones from EMD Millipore ,
OriGene ,
SwitchGear Genomics ,
GenScript ,
Sino Biological ,
DNA2.0 ,
and Vector BioLabs ,
Cell Lines from GenScript ,
LifeMap BioReagents ,
Sirion Biotech ,
In Situ Hybridization Assays from Advanced Cell Diagnostics ,
Ontologies according to Gene Ontology Consortium 01 Mar 2013 via
Entrez Gene .)
About This Section Molecular Function: UniProtKB/Swiss-Prot Summary: HELT_HUMAN, A6NFD8 Function : Transcriptional repressor which binds preferentially to the canonical E box sequence 5'-CACGCG-3' (Bysimilarity)
Gene Ontology (GO): 3 molecular function terms (GO ID links to tree view) : About this table
GO ID Qualified GO term Evidence PubMed IDs GO:0003677 DNA binding
IEA -- GO:0003700 sequence-specific DNA binding transcription factor activity
IEA -- GO:0042803 protein homodimerization activity
IEA --
HELT for ontologies About GeneDecksing Phenotypes: 4 MGI mutant phenotypes (inferred from 2 alleles ) (MGI details for Helt) :
HELT for phenotypes About GeneDecksing Animal Models: Clone Products: Browse Clones for the Expression of Recombinant Proteins Available from EMD Millipore OriGene Myc/DDK tagged cDNA clones in CMV expression vector in human , mouse , rat for HELT (see all 2 ) OriGene untagged cDNA clones in CMV expression vector in human , mouse , rat for HELTOriGene custom cloning services - gene synthesis, subcloning, mutagenesis,
variant library, vector shuttling GenScript: all cDNA clones in your preferred vector: HELT (NM_001029887 ) Browse Sino Biological Human cDNA Clones DNA2.0 Custom Codon Optimized Gene
Synthesis Service for HELT Vector BioLabs ready-to-use adenovirus/AAV for human , mouse , rat HELT
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Pathways & Interactionsfor HELT gene
(Pathways according to
EMD Millipore ,
R&D Systems ,
Cell Signaling Technology ,
KEGG ,
PharmGKB ,
BioSystems ,
Reactome ,
Tocris Bioscience ,
GeneGo (Thomson Reuters) ,
QIAGEN ,
and/or UniProtKB ,
Sets of similar genes according to GeneDecks ,
Interaction Networks according to
SABiosciences ,
and/or STRING ,
Interactions according to 1 UniProtKB ,
2 MINT ,
3 I2D , and/or
4 STRING ,
with links to IntAct and
Ensembl ,
Ontologies according to Gene Ontology Consortium 01 Mar 2013 via
Entrez Gene) .
About This Section Interactions: Search SABiosciences Gene Network CentralTM Interacting Genes and Proteins Networks for HELT STRING Interaction
Network Preview (showing 1 interactants - click image to see more details)2 Interacting proteins for HELT (A6NFD8 3 ENSP00000343464 4 ) via UniProtKB, MINT, STRING , and/or I2D About this table Gene Ontology (GO): 5/11 biological process terms (GO ID links to tree view) (see all 11 ): About this table
GO ID Qualified GO term Evidence PubMed IDs GO:0000122 negative regulation of transcription from RNA polymerase II promoter
IEA -- GO:0001967 suckling behavior
IEA -- GO:0006351 transcription, DNA-dependent
IEA -- GO:0006355 regulation of transcription, DNA-dependent
-- -- GO:0007417 central nervous system development
IEA --
HELT for ontologies About GeneDecksing
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Drugs & Compoundsfor HELT gene (Chemical Compounds according to UniProtKB , Enzo Life Sciences ,
EMD Millipore , Tocris Bioscience
HMDB ,
BitterDB , and/or
Novoseek , and Drugs according to
DrugBank ,
Enzo Life Sciences , and/or
PharmGKB , with drugs/clinical trials/news
search links to CenterWatch )
About This Section Browse Tocris compounds for HELT Search CenterWatch for drugs/clinical trials and news about HELT
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Transcriptsfor HELT gene (Secondary structures according to
fRNAdb ,
GenBank/EMBL/DDBJ Accessions according to
Unigene
(Build 235 Homo sapiens; Mar 10 2013) or GenBank , RefSeq according to Entrez Gene ,
DOTS (version 10), and/or
AceView ,
transcript ids from Ensembl
with links to UCSC ,
exon structure from GeneLoc ,
alternative splicing isoforms according to ASD and/or
ECgene ,
RNAi Products from
EMD Millipore ,
siRNAs from
OriGene ,
QIAGEN ,
shRNA from
OriGene ,
Sirion Biotech ,
microRNA from QIAGEN ,
Tagged/untagged cDNA clones from
OriGene ,
SwitchGear Genomics ,
GenScript ,
DNA2.0 ,
Vector BioLabs ,
Primers from
OriGene ,
SABiosciences , and/or
QIAGEN
)About This Section REFSEQ mRNAs for HELT gene: NM_001029887.1 Unigene Cluster for HELT:
Helt bHLH transcription factor Hs.531242 [show with all ESTs ] Unigene Representative Sequence: BC144568 4 Ensembl transcripts including schematic representations, and UCSC links where relevant : ENST00000505610 (uc003ixa.3 ) ENST00000515777 (uc011cko.2 ) ENST00000513599 (uc011ckp.1 )ENST00000338875 (uc011ckq.2 ) Clone Products: OriGene Myc/DDK tagged cDNA clones in CMV expression vector in human , mouse , rat for HELT (see all 2 ) OriGene untagged cDNA clones in CMV expression vector in human , mouse , rat for HELTOriGene custom cloning services - gene synthesis, subcloning, mutagenesis,
variant library, vector shuttling GenScript: all cDNA clones in your preferred vector: HELT (NM_001029887 ) DNA2.0 Custom Codon Optimized Gene
Synthesis Service for HELT Vector BioLabs ready-to-use adenovirus/AAV for human , mouse , rat HELT
Additional cDNA sequence: BC140795.1 BC144567.1 BC144568.1 BC144569.1
1 DOTS entry : DT.91796163
2 AceView cDNA sequences :
BI763541 BI763994 GeneLoc Exon Structure
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Expression for HELT gene
(RNA expression data according to
H-InvDB ,
NONCODE ,
miRBase , and
RNAdb ,
Expression images according to data from
BioGPS ,
Illumina Human BodyMap , and
CGAP
SAGE ,
Sets of similar genes according to GeneDecks ,
in vivo and in vitro expression data from LifeMap Discovery™ ,
plus additional links to
Genevestigator , and/or
SOURCE , and/or
BioGPS , and/or
UniProtKB ,
PCR Arrays from
SABiosciences ,
Primers from
OriGene ,
SABiosciences , and/or
QIAGEN ,
In Situ Hybridization Assays from Advanced Cell Diagnostics )
About This Section HELT expression in normal human tissues (normalized intensities) See probesets specificity/sensitivity at GeneAnnot About this image BioGPS CGAP TAG: AAGAACCTGGAbout this image HELT expression in embryonic tissues and stem cells Expression by the Database of Embryonic development, Stem cell research, and
Regenerative medicine About this table
See HELT Protein Expression from SPIRE MOPED and PaxDB SOURCE GeneReport for Unigene cluster: Hs.531242 SABiosciences Custom PCR Arrays for HELT Primer Products: OriGene genome-wide validated SYBR primer pairs in human , mouse , rat for HELTBrowse OriGene validated miRNA SYBR primer pairs SABiosciences RT2 qPCR Primer Assay in human , mouse , rat HELT QIAGEN QuantiTect SYBR Green Assays in human , mouse , rat HELT QIAGEN QuantiFast Probe-based Assays in human , mouse , rat HELT
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Orthologsfor HELT gene
(Orthologs according to
1,2 HomoloGene (2 older version, for species not in 1 newer version),
3 euGenes ,
4 SGD
,
5 MGI Mar 06 2013,
with possible further links to
Flybase
and/or
WormBase ,
and/or
6 Ensembl pan taxonomic compara ,
Gene Trees according to Ensembl and
TreeFam )
About This Section
This gene was present in the common ancestor of animals.
Orthologs for HELT gene from 4/11 species (see all 11 ) About this table
ENSEMBL Gene Tree for HELT (if available)TreeFam Gene Tree for HELT (if available)
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Paralogsfor HELT gene (Paralogs according to
1 HomoloGene , 2 Ensembl , and 3 SIMAP , Pseudogenes according to 4 Pseudogene.org Build 68)About This Section Paralogs for HELT gene HEYL 2 HES4 2 HES6 2 HEY2 2 HES7 2 HES3 2 HEY1 2 HES5 2 HES2 2 HES1 2 1 SIMAP similar gene for HELT using alignment to 2 protein entries: HELT_HUMAN (see all proteins ):HEYL
HELT for paralogs About GeneDecksing
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Genomic Variantsfor HELT gene (SNPs/Variants according to the
1 NCBI SNP Database ,
2 Ensembl ,
3 PupaSUITE ,
UniProtKB , and
DNA2.0 ,
Linkage Disequilibrium by HapMap ,
Structural Variations(CNVs/InDels/Inversions) from the Database of Genomic Variants , Mutations from the Human Gene
Mutation Database (HGMD) and the Locus Specific Mutation
Databases (LSDB) , Blood group antigen gene mutations by BGMUT ,
Resequencing Primers from QIAGEN ,
Cancer Mutation PCR Arrays and Assays and Copy Number PCR Arrays from SABiosciences )
About This Section
Genomic Data Transcription Related Data Allele Frequencies SNP ID Valid Clinical significance Chr 4 pos Sequence # AA Chg Type More # Allele freq Pop Total sample More
HapMap Linkage Disequilibrium report for HELT (185939995 - 185941958 bp)
Structural Variations (Copy Number Variations, Insertions/Deletions, Inversions) Database of Genomic Variants (DGV) variations for HELT: --
SABiosciences Cancer Mutation PCR Assays
QIAGEN SeqTarget long-range PCR primers in human , mouse , rat for resequencing HELT
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Disorders
/ Diseasesfor HELT gene
(in which this Gene is Involved, According to MalaCards ,
OMIM, UniProtKB ,
the University of Copenhagen DISEASES
database ,
Genatlas , GeneTests ,
GAD ,
HuGE Navigator ,
and/or TGDB .)
About This Section
HELT for disorders About GeneDecksing 6 diseases for HELT : About MalaCards membranous glomerulonephritis glomerulonephritis lupus erythematosus hepatitis b hepatitis neuronitis 5 diseases from the University of Copenhagen DISEASES database for HELT :Glomerulonephritis Nephrotic syndrome Proteinuria Lupus erythematosus Kidney failure Export disorders for HELT gene to outside databases
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Publicationsfor HELT gene (in
PubMed .
Associations of this gene to articles via
1 Entrez Gene ,
2 UniProtKB/Swiss-Prot ,
3 HGNC ,
4 GAD ,
5 PharmGKB ,
6 HMDB ,
7 DrugBank ,
8 UniProtKB/TrEMBL ,
9 Novoseek , and/or
10 fRNAdb )
About This Section PubMed articles for HELT gene integrated from 9 sources : (articles sorted by number of sources associating them with HELT) Utopia : connect your pdf to the dynamic world of online information
Helt determines GABAergic over glutamatergic neuronal fate by repressing Ngn genes in the developing mesencephalon. (PubMed id 17611227) 1 , 3 Nakatani T....Ono Y. (2007) Generation and annotation of the DNA sequences of human chromosomes 2 and 4. (PubMed id 15815621) 1 , 2 Hillier L.W....Wilson R.K. (2005) Helt, a novel basic-helix-loop-helix transcriptional repressor expressed in the developing central nervous system. (PubMed id 14764602) 1 , 3 Nakatani T....Ono Y. (2004) The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC). (PubMed id 15489334) 1 , 2 Gerhard D.S....Malek J. (2004) ATAC and Mediator coactivators form a stable complex and regulate a set of non-coding RNA genes. (PubMed id 20508642) 1 Krebs A.R....Tora L. (2010) Molecular characterization, structure and developmental expression of Megane bHLH factor. (PubMed id 16644143) 1 Guimera J....Wurst W. (2006) Identification and characterization of human HESL, rat Hesl and rainbow trout hesl genes in silico. (PubMed id 15375612) 1 Katoh M. and Katoh M. (2004) Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PubMed id 12477932) 1 Strausberg R.L....Marra M.A. (2002)
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External Searches for HELT gene
(in PubMed ,
OMIM , and NCBI Bookshelf ) About This Section
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Genome Databases showing HELT gene
(According to
Entrez Gene ,
HGNC ,
AceView ,
euGenes ,
Ensembl ,
miRBase ,
ECgene ,
Kegg ,
and/or
H-InvDB )
About This Section
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Other Databases showing HELT gene
(According to HUGE )
About This Section --
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Specialized Databases showing HELT gene (According to PharmGKB ,
ATLAS , HORDE , IMGT , LEIDEN , UniProtKB/Swiss-Prot , and/or UniProtKB/TrEMBL ,Wikipedia and/or GeneReviews via UniProtKB/Swiss-Prot )About This Section
Name Description
PharmGKB entry for HELT Pharmacogenomics, SNPs, Pathways
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About This Section Patent Information for HELT gene: Search GeneIP for patents involving HELT GeneCards and IP: Japan Patent Office Licenses GeneCards European Patent Office Licenses GeneCards Improving the IP Search
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Productsfor HELT gene (Antibodies, recombinant proteins, and assays from EMD Millipore , R&D Systems , OriGene , QIAGEN , GenScript , Cell Signaling Technology , SABiosciences , Novus Biologicals , Sino Biological , Enzo Life Sciences , Abcam , ProSpec , Uscn , Thermo Fisher Scientific , Gene Editing from DNA2.0 and Sirion Biotech , Clones from EMD Millipore , OriGene , GenScript , Sino Biological , DNA2.0 , SwitchGear Genomics , Vector BioLabs , Cell lines from GenScript , LifeMap BioReagents , and Sirion Biotech , PCR Arrays from SABiosciences , Drugs and/or compounds from EMD Millipore , Tocris Bioscience , and/or
Enzo Life Sciences , In Situ Hybridization Assays from Advanced Cell Diagnostics , Animal models from inGenious Targeting Laboratory )About This Section
Browse OriGene Antibodies OriGene shRNA RFP for HELT OriGene 29mer shRNA kits in GFP-retroviral vector in human , mouse , rat for HELT OriGene genome-wide validated SYBR primer pairs in human , mouse , rat for HELT OriGene Protein Over-expression Lysate for HELT Browse OriGene Fluorogenic Cell Assay Kits OriGene siRNA for HELT Browse 3'-UTR reporter clones for miRNA target validation OriGene untagged cDNA clones in CMV expression vector in human , mouse , rat for HELT OriGene Myc/DDK tagged cDNA clones in CMV expression vector in human , mouse , rat for HELT Browse OriGene GFP tagged cDNA clones in CMV expression vector Browse OriGene MicroRNA Expression Plasmids Browse OriGene basic RS shRNAs Browse OriGene validated miRNA SYBR primer pairs OriGene Purified Protein for HELT OriGene custom cloning services - gene synthesis, subcloning, mutagenesis,
variant library, vector shuttling OriGene Custom Antibody Services for HELT OriGene Custom Protein Services for HELT OriGene Custom Immunoassay Development
QIAGEN Custom miScript Target Protector blocks miRNA-binding site of in human, mouse, rat HELT QIAGEN SeqTarget long-range PCR primers in human , mouse , rat for resequencing HELT QIAGEN PyroMark CpG Assay predesigned Pyrosequencing DNA Methylation assays in human , mouse , rat HELT QIAGEN FlexiTube/FlexiPlate siRNA for gene silencing in human , mouse , rat HELT QIAGEN QuantiFast Probe-based Assays in human , mouse , rat HELT QIAGEN QuantiTect SYBR Green Assays in human , mouse , rat HELT
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HELT Proteins, Antibodies, CLIAs, and ELISAs
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Vector BioLabs ready-to-use adenovirus/AAV for human , mouse , rat HELT
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