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Aliases for HEIH Gene

Subcategory (RNA class) for HEIH Gene

non-coding RNA

Quality Score for this RNA gene is

3

Aliases for HEIH Gene

  • Hepatocellular Carcinoma Up-Regulated EZH2-Associated Long Non-Coding RNA 2 3 5
  • Hepatocellular Carcinoma Associated Transcript 2 (Non-Protein Coding) 2 3
  • Highly Expressed In Hepatocellular Carcinoma Long Non-Coding RNA 2 3
  • Long Intergenic Non-Protein Coding RNA 848 2 3
  • Long Intergenic Non-Protein Coding RNA, Highly Expressed In Hepatocellular Carcinoma 3
  • Long Non-Coding RNA, High Expression In Hepatocellular Carcinoma 3
  • LncRNA-HEIH 3
  • LINC-HEIH 3
  • LINC00848 3
  • HCCAT2 3

External Ids for HEIH Gene

Previous GeneCards Identifiers for HEIH Gene

  • GC05U901647

Summaries for HEIH Gene

GeneCards Summary for HEIH Gene

HEIH (Hepatocellular Carcinoma Up-Regulated EZH2-Associated Long Non-Coding RNA) is an RNA Gene, and is affiliated with the non-coding RNA class. Diseases associated with HEIH include Hepatocellular Carcinoma.

Additional gene information for HEIH Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for HEIH Gene

Genomics for HEIH Gene

GeneHancer (GH) Regulatory Elements for HEIH Gene

Promoters and enhancers for HEIH Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH05I180828 Promoter/Enhancer 1.9 FANTOM5 Ensembl ENCODE dbSUPER 550.8 +0.4 403 4.5 HDGF ATF1 FOXA2 SMAD1 SIN3A YY1 ETS1 ZNF280A POLR2B CBX5 LINC00847 GC05M180831 GC05M180832 HEIH PIR60076 LOC100996419 RN7SKP150 ENSG00000248103 TBC1D9B MGAT1
GH05I180834 Enhancer 0.5 Ensembl dbSUPER 0.8 -2.5 -2483 0.2 MLLT1 ZFP62 LINC00847 HEIH GC05P181054
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data dump

GeneHancers around HEIH on UCSC Golden Path with GeneCards custom track

Genomic Locations for HEIH Gene

Genomic Locations for HEIH Gene
chr5:180,829,954-180,831,618
(GRCh38/hg38)
Size:
1,665 bases
Orientation:
Minus strand

Genomic View for HEIH Gene

Genes around HEIH on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
HEIH Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for HEIH Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for HEIH Gene

Proteins for HEIH Gene

Post-translational modifications for HEIH Gene

No Post-translational modifications

No data available for DME Specific Peptides for HEIH Gene

Domains & Families for HEIH Gene

Gene Families for HEIH Gene

Graphical View of Domain Structure for InterPro Entry

genes like me logo Genes that share domains with HEIH: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for HEIH Gene

Function for HEIH Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for HEIH Gene

Localization for HEIH Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for HEIH Gene

Pathways & Interactions for HEIH Gene

No Data Available

Interacting Proteins for HEIH Gene

Gene Ontology (GO) - Biological Process for HEIH Gene

None

No data available for Pathways by source and SIGNOR curated interactions for HEIH Gene

Drugs & Compounds for HEIH Gene

No Compound Related Data Available

Transcripts for HEIH Gene

mRNA/cDNA for HEIH Gene

(10) Additional mRNA sequences :
(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Unigene Clusters for HEIH Gene

Highly expressed in hepatocellular carcinoma long non-coding RNA:
Representative Sequences:

Alternative Splicing Database (ASD) splice patterns (SP) for HEIH Gene

No ASD Table

Relevant External Links for HEIH Gene

GeneLoc Exon Structure for
HEIH
ECgene alternative splicing isoforms for
HEIH

Expression for HEIH Gene

NURSA nuclear receptor signaling pathways regulating expression of HEIH Gene:

HEIH

SOURCE GeneReport for Unigene cluster for HEIH Gene:

Hs.655606
No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for HEIH Gene

Orthologs for HEIH Gene

Evolution for HEIH Gene

ENSEMBL:
Gene Tree for HEIH (if available)
TreeFam:
Gene Tree for HEIH (if available)

No data available for Orthologs for HEIH Gene

Paralogs for HEIH Gene

No data available for Paralogs for HEIH Gene

Variants for HEIH Gene

Sequence variations from dbSNP and Humsavar for HEIH Gene

SNP ID Clin Chr 05 pos Variation AA Info Type
rs1000006226 -- 180,831,164(-) G/A non_coding_transcript_variant
rs1000719392 -- 180,830,261(-) T/C non_coding_transcript_variant
rs1000932708 -- 180,831,584(-) C/G non_coding_transcript_variant
rs1001006439 -- 180,831,398(-) T/G non_coding_transcript_variant
rs1001046252 -- 180,830,438(-) G/A non_coding_transcript_variant

Structural Variations from Database of Genomic Variants (DGV) for HEIH Gene

Variant ID Type Subtype PubMed ID
dgv9n29 CNV loss 16826518
esv2731354 CNV deletion 23290073
esv2759399 CNV gain 17122850
nsv1026417 CNV gain 25217958
nsv1161322 CNV duplication 26073780
nsv428133 CNV gain 18775914

Additional Variant Information for HEIH Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
HEIH

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for HEIH Gene

Disorders for HEIH Gene

MalaCards: The human disease database

(1) MalaCards diseases for HEIH Gene - From: DISEASES and GeneCards

Disorder Aliases PubMed IDs
hepatocellular carcinoma
  • hcc
- elite association - COSMIC cancer census association via MalaCards
Search HEIH in MalaCards View complete list of genes associated with diseases

Additional Disease Information for HEIH

genes like me logo Genes that share disorders with HEIH: view

No data available for UniProtKB/Swiss-Prot and Genatlas for HEIH Gene

Publications for HEIH Gene

  1. Long noncoding RNA: an emerging paradigm of cancer research. (PMID: 23359273) Qiu MT … Xu L (Tumour biology : the journal of the International Society for Oncodevelopmental Biology and Medicine 2013) 2 3 58
  2. Long noncoding RNA high expression in hepatocellular carcinoma facilitates tumor growth through enhancer of zeste homolog 2 in humans. (PMID: 21769904) Yang F … Sun SH (Hepatology (Baltimore, Md.) 2011) 2 3 58
  3. Diversification of transcriptional modulation: large-scale identification and characterization of putative alternative promoters of human genes. (PMID: 16344560) Kimura K … Sugano S (Genome research 2006) 3 58
  4. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg RL … Mammalian Gene Collection Program Team (Proceedings of the National Academy of Sciences of the United States of America 2002) 3 58

Products for HEIH Gene

Sources for HEIH Gene

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