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Aliases for HECW1-IT1 Gene

Subcategory (RNA class) for HECW1-IT1 Gene

non-coding RNA

Quality Score for this RNA gene is

3

Aliases for HECW1-IT1 Gene

  • HECW1 Intronic Transcript 1 2 3 5
  • HECW1 Intronic Transcript 1 (Non-Protein Coding) 2

External Ids for HECW1-IT1 Gene

Previous GeneCards Identifiers for HECW1-IT1 Gene

  • GC07P043159

Summaries for HECW1-IT1 Gene

GeneCards Summary for HECW1-IT1 Gene

HECW1-IT1 (HECW1 Intronic Transcript 1) is an RNA Gene, and is affiliated with the non-coding RNA class.

Additional gene information for HECW1-IT1 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for HECW1-IT1 Gene

Genomics for HECW1-IT1 Gene

GeneHancer (GH) Regulatory Elements for HECW1-IT1 Gene

Promoters and enhancers for HECW1-IT1 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH07I043119 Enhancer 0.5 ENCODE 550.8 +1.7 1698 1 JUND IKZF1 CREB1 FOS HECW1-IT1 ENSG00000228680 RNU7-35P HECW1 MIR3943
GH07I043078 Enhancer 1 FANTOM5 ENCODE 11.5 -40.0 -39963 1.2 MAFG DPF2 ZBTB40 E4F1 GABPA FOSL1 MAFF ZNF316 POLR2A GABPB1 HECW1 HECW1-IT1 ENSG00000228680 LOC105375254 GC07P043096 LOC105375253
GH07I043138 Enhancer 0.6 ENCODE 11.5 +22.2 22206 3.9 RNF2 BACH1 ZIC2 SP1 SMARCA4 GLIS1 ZNF239 SCRT2 BCL6B CTBP2 HECW1-IT1 HECW1 RNU7-35P RNU6-575P ENSG00000228680 C7orf25 MIR3943
GH07I043071 Enhancer 0.6 ENCODE 11.4 -45.4 -45438 1.7 CTCF REST ZNF592 CHAMP1 CC2D1A MTA3 SMARCA4 IKZF1 ZNF143 ZBTB33 LOC105375254 HECW1 HECW1-IT1 GC07P043096 LOC105375253
GH07I043073 Enhancer 0.3 ENCODE 11.4 -44.5 -44456 0.1 IKZF1 HECW1 HECW1-IT1 LOC105375254 GC07P043096 LOC105375253
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data dump

GeneHancers around HECW1-IT1 on UCSC Golden Path with GeneCards custom track

Genomic Locations for HECW1-IT1 Gene

Genomic Locations for HECW1-IT1 Gene
chr7:43,117,896-43,163,187
(GRCh38/hg38)
Size:
45,292 bases
Orientation:
Plus strand
chr7:43,157,495-43,202,786
(GRCh37/hg19)

Genomic View for HECW1-IT1 Gene

Genes around HECW1-IT1 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
HECW1-IT1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for HECW1-IT1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for HECW1-IT1 Gene

Proteins for HECW1-IT1 Gene

Post-translational modifications for HECW1-IT1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for HECW1-IT1 Gene

Domains & Families for HECW1-IT1 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for HECW1-IT1 Gene

Function for HECW1-IT1 Gene

Animal Model Products

Clone Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for HECW1-IT1 Gene

Localization for HECW1-IT1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for HECW1-IT1 Gene

Pathways & Interactions for HECW1-IT1 Gene

SuperPathways for HECW1-IT1 Gene

No Data Available

Interacting Proteins for HECW1-IT1 Gene

Gene Ontology (GO) - Biological Process for HECW1-IT1 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for HECW1-IT1 Gene

Drugs & Compounds for HECW1-IT1 Gene

No Compound Related Data Available

Transcripts for HECW1-IT1 Gene

mRNA/cDNA for HECW1-IT1 Gene

(5) Additional mRNA sequences :
(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Unigene Clusters for HECW1-IT1 Gene

HECW1 intronic transcript 1 (non-protein coding):
Representative Sequences:

Clone Products

Alternative Splicing Database (ASD) splice patterns (SP) for HECW1-IT1 Gene

No ASD Table

Relevant External Links for HECW1-IT1 Gene

GeneLoc Exon Structure for
HECW1-IT1
ECgene alternative splicing isoforms for
HECW1-IT1

Expression for HECW1-IT1 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for HECW1-IT1 Gene

mRNA differential expression in normal tissues according to GTEx for HECW1-IT1 Gene

This gene is overexpressed in Testis (x40.7).

SOURCE GeneReport for Unigene cluster for HECW1-IT1 Gene:

Hs.666610
genes like me logo Genes that share expression patterns with HECW1-IT1: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for HECW1-IT1 Gene

Orthologs for HECW1-IT1 Gene

Evolution for HECW1-IT1 Gene

ENSEMBL:
Gene Tree for HECW1-IT1 (if available)
TreeFam:
Gene Tree for HECW1-IT1 (if available)

No data available for Orthologs for HECW1-IT1 Gene

Paralogs for HECW1-IT1 Gene

No data available for Paralogs for HECW1-IT1 Gene

Variants for HECW1-IT1 Gene

Sequence variations from dbSNP and Humsavar for HECW1-IT1 Gene

SNP ID Clin Chr 07 pos Variation AA Info Type
rs1000027188 -- 43,143,091(+) C/T intron_variant
rs1000113864 -- 43,156,028(+) T/C intron_variant
rs1000233774 -- 43,137,007(+) T/C intron_variant
rs1000243827 -- 43,118,794(+) T/C intron_variant
rs1000275187 -- 43,149,147(+) C/A intron_variant

Additional Variant Information for HECW1-IT1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
HECW1-IT1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for HECW1-IT1 Gene

Disorders for HECW1-IT1 Gene

Additional Disease Information for HECW1-IT1

No disorders were found for HECW1-IT1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for HECW1-IT1 Gene

Publications for HECW1-IT1 Gene

  1. Complete sequencing and characterization of 21,243 full-length human cDNAs. (PMID: 14702039) Ota T … Sugano S (Nature genetics 2004) 3 58

Products for HECW1-IT1 Gene

Sources for HECW1-IT1 Gene

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