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Aliases for HECW1-IT1 Gene

Subcategory (RNA class) for HECW1-IT1 Gene

non-coding RNA

Quality Score for this RNA gene is

3

Aliases for HECW1-IT1 Gene

  • HECW1 Intronic Transcript 1 2 3 5
  • HECW1 Intronic Transcript 1 (Non-Protein Coding) 2

External Ids for HECW1-IT1 Gene

Previous GeneCards Identifiers for HECW1-IT1 Gene

  • GC07P043159

Summaries for HECW1-IT1 Gene

GeneCards Summary for HECW1-IT1 Gene

HECW1-IT1 (HECW1 Intronic Transcript 1) is an RNA Gene, and is affiliated with the non-coding RNA class.

No data available for Entrez Gene Summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for HECW1-IT1 Gene

Genomics for HECW1-IT1 Gene

Regulatory Elements for HECW1-IT1 Gene

Enhancers for HECW1-IT1 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH07F042231 2 ENCODE 15.7 -882.1 -882107 7.6 PKNOX1 FEZF1 GLI4 ZNF2 GLIS2 KLF7 FOS ZNF263 SP3 TSHZ1 LINC01448 MIR3943 HECW1-IT1 GLI3 GC07P042154
GH07F044079 1.4 Ensembl ENCODE 15.7 +964.8 964806 6.2 HDGF PKNOX1 ARNT MLX CREB3L1 WRNIP1 ARID4B SIN3A DMAP1 ZNF2 ENSG00000228680 DDX56 POLM RASA4CP ENSG00000239556 POLR2J4 ENSG00000228596 RPL18AP10 MIR3943 HECW1-IT1
GH07F042196 1.3 Ensembl ENCODE 15.7 -919.6 -919579 2.8 PKNOX1 SIN3A GLI4 FEZF1 ZNF2 GLIS2 KLF7 FOS ZNF263 SP3 LINC01448 MIR3943 HECW1-IT1 GLI3 GC07P042154
GH07F043078 1.1 FANTOM5 ENCODE 11.5 -40.0 -39963 1.2 CBX3 ZBTB40 ZNF316 POLR2A SCRT2 ZSCAN29 MAFK SCRT1 RFX1 MAFG HECW1 HECW1-IT1 ENSG00000228680 LOC105375254 GC07P043096 LOC105375253
GH07F042830 0.8 ENCODE 15.7 -286.4 -286361 2.1 CTCF ZSCAN18 ZNF792 ZNF266 RAD21 SMC3 ZBTB20 NFE2L2 ZNF654 ZNF501 ENSG00000228680 LINC01448 MIR3943 RPL18AP10 HECW1-IT1 GC07M042842 TCP1P1
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around HECW1-IT1 on UCSC Golden Path with GeneCards custom track

Genomic Location for HECW1-IT1 Gene

Chromosome:
7
Start:
43,117,896 bp from pter
End:
43,163,187 bp from pter
Size:
45,292 bases
Orientation:
Plus strand

Genomic View for HECW1-IT1 Gene

Genes around HECW1-IT1 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
HECW1-IT1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for HECW1-IT1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for HECW1-IT1 Gene

Proteins for HECW1-IT1 Gene

Post-translational modifications for HECW1-IT1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for HECW1-IT1 Gene

Domains & Families for HECW1-IT1 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for HECW1-IT1 Gene

Function for HECW1-IT1 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for HECW1-IT1 Gene

Localization for HECW1-IT1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for HECW1-IT1 Gene

Pathways & Interactions for HECW1-IT1 Gene

SuperPathways for HECW1-IT1 Gene

No Data Available

Interacting Proteins for HECW1-IT1 Gene

Gene Ontology (GO) - Biological Process for HECW1-IT1 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for HECW1-IT1 Gene

Transcripts for HECW1-IT1 Gene

mRNA/cDNA for HECW1-IT1 Gene

(5) Additional mRNA sequences :
(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Unigene Clusters for HECW1-IT1 Gene

HECW1 intronic transcript 1 (non-protein coding):
Representative Sequences:

Alternative Splicing Database (ASD) splice patterns (SP) for HECW1-IT1 Gene

No ASD Table

Relevant External Links for HECW1-IT1 Gene

GeneLoc Exon Structure for
HECW1-IT1
ECgene alternative splicing isoforms for
HECW1-IT1

Expression for HECW1-IT1 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for HECW1-IT1 Gene

mRNA differential expression in normal tissues according to GTEx for HECW1-IT1 Gene

This gene is overexpressed in Testis (x40.7).

SOURCE GeneReport for Unigene cluster for HECW1-IT1 Gene:

Hs.666610
genes like me logo Genes that share expression patterns with HECW1-IT1: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners and mRNA Expression by UniProt/SwissProt for HECW1-IT1 Gene

Orthologs for HECW1-IT1 Gene

Evolution for HECW1-IT1 Gene

ENSEMBL:
Gene Tree for HECW1-IT1 (if available)
TreeFam:
Gene Tree for HECW1-IT1 (if available)

No data available for Orthologs for HECW1-IT1 Gene

Paralogs for HECW1-IT1 Gene

No data available for Paralogs for HECW1-IT1 Gene

Variants for HECW1-IT1 Gene

Sequence variations from dbSNP and Humsavar for HECW1-IT1 Gene

SNP ID Clin Chr 07 pos Sequence Context AA Info Type
rs1006106 -- 43,123,456(-) AAAGC(G/T)CAGGG intron-variant
rs1006107 -- 43,123,370(-) GTCAA(C/T)GGCAG intron-variant
rs1006108 -- 43,123,023(-) TGGAC(A/G)TTTTC intron-variant
rs10215924 -- 43,158,975(+) TGATT(C/G)AGTAG intron-variant
rs10224940 -- 43,138,285(+) TTTCT(C/T)GGCTT intron-variant

Relevant External Links for HECW1-IT1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
HECW1-IT1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for HECW1-IT1 Gene

Disorders for HECW1-IT1 Gene

Relevant External Links for HECW1-IT1

Atlas of Genetics and Cytogenetics in Oncology and Haematology:
HECW1-IT1

No disorders were found for HECW1-IT1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for HECW1-IT1 Gene

Publications for HECW1-IT1 Gene

  1. Complete sequencing and characterization of 21,243 full-length human cDNAs. (PMID: 14702039) Ota T. … Sugano S. (Nat. Genet. 2004) 3 64

Products for HECW1-IT1 Gene

Sources for HECW1-IT1 Gene

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