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Aliases for HECW1-IT1 Gene

Subcategory (RNA class) for HECW1-IT1 Gene

non-coding RNA

Quality Score for this RNA gene is

3

Aliases for HECW1-IT1 Gene

  • HECW1 Intronic Transcript 1 2 3 5
  • HECW1 Intronic Transcript 1 (Non-Protein Coding) 2

External Ids for HECW1-IT1 Gene

Previous GeneCards Identifiers for HECW1-IT1 Gene

  • GC07P043159

Summaries for HECW1-IT1 Gene

GeneCards Summary for HECW1-IT1 Gene

HECW1-IT1 (HECW1 Intronic Transcript 1) is an RNA Gene, and is affiliated with the non-coding RNA class.

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for HECW1-IT1 Gene

Genomics for HECW1-IT1 Gene

Regulatory Elements for HECW1-IT1 Gene

Enhancers for HECW1-IT1 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH07G043078 1.1 FANTOM5 ENCODE 11.5 -40.0 -39963 1.2 SCRT1 ESRRA RFX1 CBX3 MAFG DPF2 ZBTB40 GABPA FOSL1 MAFF HECW1 HECW1-IT1 ENSG00000228680 LOC105375254 GC07P043096 LOC105375253
GH07G043071 0.9 ENCODE 11.4 -45.4 -45438 1.7 CBX3 PKNOX1 KLF17 GLI4 RAD21 CHAMP1 ZNF335 GLIS2 KLF7 ZNF263 LOC105375254 HECW1 HECW1-IT1 GC07P043096 LOC105375253
GH07G043138 0.8 ENCODE 11.5 +22.2 22207 3.9 CTCF TEAD4 ZIC2 RAD21 ZNF316 SCRT2 ZNF239 SMC3 MAFK TCF7L2 HECW1-IT1 HECW1 RNU7-35P RNU6-575P ENSG00000228680 C7orf25 MIR3943
GH07G043073 0.8 ENCODE 11.4 -44.5 -44457 0.1 KLF17 GLI4 ZNF335 GLIS2 KLF7 EGR2 ZNF263 SP3 ZNF398 KLF16 HECW1 HECW1-IT1 LOC105375254 GC07P043096 LOC105375253
GH07G043202 0.4 ENCODE 9.6 +84.2 84221 0.2 SMARCA4 ENSG00000228680 HECW1 HECW1-IT1 GC07M043207 RNU6-575P GC07P043194
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around HECW1-IT1 on UCSC Golden Path with GeneCards custom track

Genomic Location for HECW1-IT1 Gene

Chromosome:
7
Start:
43,117,896 bp from pter
End:
43,163,187 bp from pter
Size:
45,292 bases
Orientation:
Plus strand

Genomic View for HECW1-IT1 Gene

Genes around HECW1-IT1 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
HECW1-IT1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for HECW1-IT1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for HECW1-IT1 Gene

Proteins for HECW1-IT1 Gene

Post-translational modifications for HECW1-IT1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for HECW1-IT1 Gene

Domains & Families for HECW1-IT1 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for HECW1-IT1 Gene

Function for HECW1-IT1 Gene

Animal Model Products

Clone Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for HECW1-IT1 Gene

Localization for HECW1-IT1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for HECW1-IT1 Gene

Pathways & Interactions for HECW1-IT1 Gene

SuperPathways for HECW1-IT1 Gene

No Data Available

Interacting Proteins for HECW1-IT1 Gene

Gene Ontology (GO) - Biological Process for HECW1-IT1 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for HECW1-IT1 Gene

Drugs & Compounds for HECW1-IT1 Gene

No Compound Related Data Available

Transcripts for HECW1-IT1 Gene

mRNA/cDNA for HECW1-IT1 Gene

(5) Additional mRNA sequences :
(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Unigene Clusters for HECW1-IT1 Gene

HECW1 intronic transcript 1 (non-protein coding):
Representative Sequences:

Clone Products

Alternative Splicing Database (ASD) splice patterns (SP) for HECW1-IT1 Gene

No ASD Table

Relevant External Links for HECW1-IT1 Gene

GeneLoc Exon Structure for
HECW1-IT1
ECgene alternative splicing isoforms for
HECW1-IT1

Expression for HECW1-IT1 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for HECW1-IT1 Gene

mRNA differential expression in normal tissues according to GTEx for HECW1-IT1 Gene

This gene is overexpressed in Testis (x40.7).

SOURCE GeneReport for Unigene cluster for HECW1-IT1 Gene:

Hs.666610
genes like me logo Genes that share expression patterns with HECW1-IT1: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for HECW1-IT1 Gene

Orthologs for HECW1-IT1 Gene

Evolution for HECW1-IT1 Gene

ENSEMBL:
Gene Tree for HECW1-IT1 (if available)
TreeFam:
Gene Tree for HECW1-IT1 (if available)

No data available for Orthologs for HECW1-IT1 Gene

Paralogs for HECW1-IT1 Gene

No data available for Paralogs for HECW1-IT1 Gene

Variants for HECW1-IT1 Gene

Sequence variations from dbSNP and Humsavar for HECW1-IT1 Gene

SNP ID Clin Chr 07 pos Sequence Context AA Info Type
rs1000027188 -- 43,143,091(+) TCCAC(C/T)TCCTG intron-variant
rs1000113864 -- 43,156,028(+) AAAAT(C/T)AGCAC intron-variant
rs1000233774 -- 43,137,007(+) AATCT(C/T)GTAGT intron-variant
rs1000243827 -- 43,118,794(+) TGGTG(C/T)CCCCT intron-variant
rs1000275187 -- 43,149,147(+) TATCT(A/C)CCCCT intron-variant, upstream-variant-2KB

Relevant External Links for HECW1-IT1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
HECW1-IT1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for HECW1-IT1 Gene

Disorders for HECW1-IT1 Gene

Relevant External Links for HECW1-IT1

Atlas of Genetics and Cytogenetics in Oncology and Haematology:
HECW1-IT1

No disorders were found for HECW1-IT1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for HECW1-IT1 Gene

Publications for HECW1-IT1 Gene

  1. Complete sequencing and characterization of 21,243 full-length human cDNAs. (PMID: 14702039) Ota T. … Sugano S. (Nat. Genet. 2004) 3 64

Products for HECW1-IT1 Gene

Sources for HECW1-IT1 Gene

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