Aliases for HECTD4 Gene
Aliases for HECTD4 Gene
External Ids for HECTD4 Gene
- HGNC: 26611
- Entrez Gene: 283450
- Ensembl: ENSG00000173064
- UniProtKB: Q9Y4D8
Previous HGNC Symbols for HECTD4 Gene
- C12orf51
Previous GeneCards Identifiers for HECTD4 Gene
- GC12M112597
Summaries for HECTD4 Gene
GeneCards Summary for HECTD4 Gene
HECTD4 (HECT Domain E3 Ubiquitin Protein Ligase 4) is a Protein Coding gene. GO annotations related to this gene include ligase activity and ubiquitin-protein transferase activity.
UniProtKB/Swiss-Prot for HECTD4 Gene
-
E3 ubiquitin-protein ligase which accepts ubiquitin from an E2 ubiquitin-conjugating enzyme in the form of a thioester and then directly transfers the ubiquitin to targeted substrates.
No data available for Entrez Gene Summary , CIViC summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for HECTD4 Gene
Genomics for HECTD4 Gene
Regulatory Elements for HECTD4 Gene
Enhancers for HECTD4 Gene
- Elite enhancer and/or Elite enhancer-gene association
Download GeneHancer data dump
Enhancers around HECTD4 on UCSC Golden Path with GeneCards custom track
Regulatory Element Products
Genomic Location for HECTD4 Gene
- Chromosome:
- 12
- Start:
- 112,160,188 bp from pter
- End:
- 112,382,439 bp from pter
- Size:
- 222,252 bases
- Orientation:
- Minus strand
Genomic View for HECTD4 Gene
Genes around HECTD4 on UCSC Golden Path with GeneCards custom track
- Cytogenetic band:
-
- 12q24.13 by Ensembl
- 12q24.13 by Entrez Gene
- 12q24.13 by HGNC
HECTD4 Gene in genomic location: bands according to
Ensembl, locations according to GeneLoc
(and/or Entrez Gene and/or Ensembl if different)
Genomic Neighborhood
• Exon Structure
• Gene Density
RefSeq DNA sequence for HECTD4 Gene
Proteins for HECTD4 Gene
-
Protein details for HECTD4 Gene (UniProtKB/Swiss-Prot)
- Protein Symbol:
- Q9Y4D8-HECD4_HUMAN
- Recommended name:
- Probable E3 ubiquitin-protein ligase HECTD4
- Protein Accession:
- Q9Y4D8
- L8B0P6
- Q3MJD5
- Q6P0A0
- Q7L530
- Q8NB70
- Q8WU73
- Q96NT9
- Q9NZS4
- Q9UFT6
Protein attributes for HECTD4 Gene
- Size:
- 3996 amino acids
- Molecular mass:
- 439344 Da
- Quaternary structure:
- No Data Available
- SequenceCaution:
-
- Sequence=AAF36539.1; Type=Miscellaneous discrepancy; Note=Contaminating sequence. Sequence of unknown origin in the N-terminal part.; Evidence={ECO:0000305}; Sequence=AAH65706.1; Type=Erroneous initiation; Note=Translation N-terminally extended.; Evidence={ECO:0000305}; Sequence=AAH65706.1; Type=Miscellaneous discrepancy; Note=Contaminating sequence. Potential poly-A sequence.; Evidence={ECO:0000305}; Sequence=AAI01483.1; Type=Erroneous initiation; Note=Translation N-terminally extended.; Evidence={ECO:0000305}; Sequence=BAA31589.3; Type=Miscellaneous discrepancy; Note=Contaminating sequence. Sequence of unknown origin in the N-terminal part.; Evidence={ECO:0000305}; Sequence=BAC03671.1; Type=Erroneous initiation; Note=Translation N-terminally extended.; Evidence={ECO:0000305};
Protein Expression for HECTD4 Gene
Post-translational modifications for HECTD4 Gene
Other Protein References for HECTD4 Gene
- ENSEMBL proteins:
- REFSEQ proteins:
Antibody Products
- Novus Biologicals Antibodies for HECTD4
-
Abcam antibodies for HECTD4
- Invitrogen Antibodies for HECTD4
- Search GeneTex for Antibodies for HECTD4
Protein Products
- Search Origene for Purified Proteins, MassSpec and Protein Over-expression Lysates for HECTD4
- Origene Custom Protein Services for HECTD4
- Novus Biologicals proteins for HECTD4
- Search GeneTex for Proteins for HECTD4
-
Abcam proteins for HECTD4
Assay Products
No data available for DME Specific Peptides for HECTD4 Gene
Domains & Families for HECTD4 Gene
Protein Domains for HECTD4 Gene
- InterPro:
- Blocks:
- ProtoNet:
Suggested Antigen Peptide Sequences for HECTD4 Gene
- GenScript: Design optimal peptide antigens:
Graphical View of Domain Structure for InterPro Entry
No data available for Gene Families and UniProtKB/Swiss-Prot for HECTD4 Gene
Function for HECTD4 Gene
Molecular function for HECTD4 Gene
- UniProtKB/Swiss-Prot CatalyticActivity:
- S-ubiquitinyl-[E2 ubiquitin-conjugating enzyme]-L-cysteine + [acceptor protein]-L-lysine = [E2 ubiquitin-conjugating enzyme]-L-cysteine + N(6)-ubiquitinyl-[acceptor protein]-L-lysine.
- UniProtKB/Swiss-Prot Function:
- E3 ubiquitin-protein ligase which accepts ubiquitin from an E2 ubiquitin-conjugating enzyme in the form of a thioester and then directly transfers the ubiquitin to targeted substrates.
Enzyme Numbers (IUBMB) for HECTD4 Gene
| GO ID | Qualified GO term | Evidence | PubMed IDs |
|---|---|---|---|
| GO:0004842 | ubiquitin-protein transferase activity | IEA | -- |
| GO:0016740 | transferase activity | IEA | -- |
Phenotypes for HECTD4 Gene
- GenomeRNAi human phenotypes for HECTD4:
Animal Model Products
- Taconic Biosciences: Generate A Custom CRISPR Mouse Model For Your Study
-
ViGene Biosciences lentiviral particle packaged cDNA for HECTD4 gene
-
ViGene Biosciences ready-to-package AAV shRNAs for HECTD4 gene
- Search ViGene Biosciences for HECTD4
CRISPR Products
-
OriGene CRISPR knockouts for HECTD4
-
Santa Cruz Biotechnology (SCBT) CRISPR for HECTD4
miRNA for HECTD4 Gene
- miRTarBase miRNAs that target HECTD4
miRNA Products
- Search ViGene Biosciences for HECTD4
Inhibitory RNA Products
- Origene RNAi, siRNA, and shRNA products in human, mouse, rat for HECTD4
- Browse OriGene Inhibitory RNA Products For HECTD4
-
ViGene Biosciences ready-to-package AAV shRNAs for HECTD4 gene
Clone Products
-
OriGene ORF clones in human for HECTD4
- Custom cloning services - gene synthesis, subcloning, mutagenesis, variant library, vector shuttling
Cell Line Products
-
Horizon Cell Lines for HECTD4
-
ViGene Biosciences adenoviral particle packaged cDNA for HECTD4 gene
-
ViGene Biosciences lentiviral particle packaged cDNA for HECTD4 gene
-
ViGene Biosciences ready-to-package AAV shRNAs for HECTD4 gene
Flow Cytometry Products
No data available for Human Phenotype Ontology , Animal Models , Transcription Factor Targets and HOMER Transcription for HECTD4 Gene
Localization for HECTD4 Gene
Subcellular locations from UniProtKB/Swiss-Prot for HECTD4 Gene
- Membrane; Single-pass membrane protein.
| Compartment | Confidence |
|---|---|
| plasma membrane | 3 |
| cytosol | 3 |
| nucleus | 2 |
| GO ID | Qualified GO term | Evidence | PubMed IDs |
|---|---|---|---|
| GO:0016021 | integral component of membrane | IEA | -- |
Pathways & Interactions for HECTD4 Gene
No Data Available
UniProtKB/Swiss-Prot Q9Y4D8-HECD4_HUMAN
- Pathway: Protein modification; protein ubiquitination.
Interacting Proteins for HECTD4 Gene
Selected Interacting proteins:
ENSP00000449784
Q9Y4D8-HECD4_HUMAN
for HECTD4 Gene via
STRING
MINT
IID
| GO ID | Qualified GO term | Evidence | PubMed IDs |
|---|---|---|---|
| GO:0006006 | glucose metabolic process | IMP | 23575436 |
| GO:0016567 | protein ubiquitination | IEA | -- |
| GO:0042593 | glucose homeostasis | IMP | 23575436 |
No data available for Pathways by source and SIGNOR curated interactions for HECTD4 Gene
Transcripts for HECTD4 Gene
mRNA/cDNA for HECTD4 Gene
- (2) REFSEQ mRNAs :
- (10) Additional mRNA sequences :
- (61) Selected AceView cDNA sequences:
- (14) Ensembl transcripts including schematic representations, and UCSC links where relevant :
Unigene Clusters for HECTD4 Gene
- HECT domain containing E3 ubiquitin protein ligase 4:
- Representative Sequences:
CRISPR Products
-
OriGene CRISPR knockouts for HECTD4
-
Santa Cruz Biotechnology (SCBT) CRISPR for HECTD4
miRNA Products
- Search ViGene Biosciences for HECTD4
Inhibitory RNA Products
- Origene RNAi, siRNA, and shRNA products in human, mouse, rat for HECTD4
- Browse OriGene Inhibitory RNA Products For HECTD4
-
ViGene Biosciences ready-to-package AAV shRNAs for HECTD4 gene
Clone Products
-
OriGene ORF clones in human for HECTD4
- Custom cloning services - gene synthesis, subcloning, mutagenesis, variant library, vector shuttling
Flow Cytometry Products
| ExUns: | 1a | · | 1b | ^ | 2 | ^ | 3 | ^ | 4 | ^ | 5 | ^ | 6 | ^ | 7 | ^ | 8 | ^ | 9 | ^ | 10 | ^ | 11 | ^ | 12 | ^ | 13 | ^ | 14a | · | 14b | ^ | 15 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| SP1: | |||||||||||||||||||||||||||||||||
| SP2: |
Expression for HECTD4 Gene
mRNA expression in embryonic tissues and stem cells from LifeMap Discovery
This gene is overexpressed in Adrenal (10.2), Plasma (9.0), Fetal Brain (6.9), Skin (6.3), and Liver, secretome (6.1).
Integrated Proteomics: protein expression in normal tissues and cell lines from ProteomicsDB, PaxDb, MaxQB, and MOPED for HECTD4 Gene
NURSA nuclear receptor signaling pathways regulating expression of HECTD4 Gene:
HECTD4SOURCE GeneReport for Unigene cluster for HECTD4 Gene:
Hs.530943Evidence on tissue expression from TISSUES for HECTD4 Gene
- Nervous system(4.5)
- Eye(4.2)
- Liver(4.2)
- Lung(4.1)
Primer Products
-
OriGene qPCR primer pairs for HECTD4
No data available for mRNA differential expression in normal tissues , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt and Phenotype-based relationships between genes and organs from Gene ORGANizer for HECTD4 Gene
Orthologs for HECTD4 Gene
This gene was present in the common ancestor of animals and fungi.
| Organism | Taxonomy | Gene | Similarity | Type | Details |
|---|---|---|---|---|---|
| chimpanzee (Pan troglodytes) |
Mammalia | HECTD4 34 35 |
|
||
| cow (Bos Taurus) |
Mammalia | -- 35 |
|
OneToMany | |
| -- 35 |
|
OneToMany | |||
| -- 35 |
|
OneToMany | |||
| HECTD4 34 |
|
||||
| oppossum (Monodelphis domestica) |
Mammalia | HECTD4 35 |
|
OneToOne | |
| dog (Canis familiaris) |
Mammalia | HECTD4 34 35 |
|
||
| mouse (Mus musculus) |
Mammalia | Gm15800 35 16 34 |
|
OneToOne | |
| rat (Rattus norvegicus) |
Mammalia | RGD1309762 34 |
|
||
| platypus (Ornithorhynchus anatinus) |
Mammalia | HECTD4 35 |
|
OneToOne | |
| chicken (Gallus gallus) |
Aves | HECTD4 35 |
|
OneToOne | |
| C15H12orf51 34 |
|
||||
| lizard (Anolis carolinensis) |
Reptilia | HECTD4 35 |
|
OneToOne | |
| tropical clawed frog (Silurana tropicalis) |
Amphibia | hectd4 34 |
|
||
| zebrafish (Danio rerio) |
Actinopterygii | CU459012.3 35 |
|
OneToMany | |
| HECTD4 (1 of 3) 35 |
|
OneToMany | |||
| HECTD4 (3 of 3) 35 |
|
OneToMany | |||
| LOC101885095 34 |
|
||||
| baker's yeast (Saccharomyces cerevisiae) |
Saccharomycetes | TOM1 35 |
|
OneToMany | |
| sea squirt (Ciona savignyi) |
Ascidiacea | -- 35 |
|
OneToOne |
- Species where no ortholog for HECTD4 was found in the sources mined by GeneCards:
-
- A. gosspyii yeast (Ashbya gossypii)
- Actinobacteria (Mycobacterium tuberculosis)
- African clawed frog (Xenopus laevis)
- African malaria mosquito (Anopheles gambiae)
- Alicante grape (Vitis vinifera)
- alpha proteobacteria (Wolbachia pipientis)
- amoeba (Dictyostelium discoideum)
- Archea (Pyrococcus horikoshii)
- barley (Hordeum vulgare)
- beta proteobacteria (Neisseria meningitidis)
- bread mold (Neurospora crassa)
- Chromalveolata (Phytophthora infestans)
- common water flea (Daphnia pulex)
- corn (Zea mays)
- E. coli (Escherichia coli)
- filamentous fungi (Aspergillus nidulans)
- Firmicute bacteria (Streptococcus pneumoniae)
- fission yeast (Schizosaccharomyces pombe)
- fruit fly (Drosophila melanogaster)
- green algae (Chlamydomonas reinhardtii)
- honey bee (Apis mellifera)
- K. lactis yeast (Kluyveromyces lactis)
- loblloly pine (Pinus taeda)
- malaria parasite (Plasmodium falciparum)
- medicago trunc (Medicago Truncatula)
- moss (Physcomitrella patens)
- orangutan (Pongo pygmaeus)
- pig (Sus scrofa)
- rainbow trout (Oncorhynchus mykiss)
- rice (Oryza sativa)
- rice blast fungus (Magnaporthe grisea)
- schistosome parasite (Schistosoma mansoni)
- sea anemone (Nematostella vectensis)
- sea urchin (Strongylocentrotus purpuratus)
- sorghum (Sorghum bicolor)
- soybean (Glycine max)
- stem rust fungus (Puccinia graminis)
- sugarcane (Saccharum officinarum)
- thale cress (Arabidopsis thaliana)
- tomato (Lycopersicon esculentum)
- toxoplasmosis (Toxoplasma gondii)
- Trichoplax (Trichoplax adhaerens)
- wheat (Triticum aestivum)
- worm (Caenorhabditis elegans)
Paralogs for HECTD4 Gene
(1) SIMAP similar genes for HECTD4 Gene using alignment to 5 proteins:
Pseudogenes.org Pseudogenes for HECTD4 Gene
No data available for Paralogs for HECTD4 Gene
Variants for HECTD4 Gene
| SNP ID | Clin | Chr 12 pos | Sequence Context | AA Info | Type |
|---|---|---|---|---|---|
| rs1000001866 | -- | 112,184,511(+) | GCGGA(A/G)GCGCT | reference, synonymous-codon | |
| rs1000008290 | -- | 112,176,356(+) | TTTAC(G/T)TCCTC | intron-variant | |
| rs1000012077 | -- | 112,329,373(+) | TTGTT(G/T)TTTTT | intron-variant | |
| rs1000069855 | -- | 112,192,695(+) | CTGGC(C/T)ATTTC | reference, missense | |
| rs1000080080 | -- | 112,351,880(+) | AGTCA(A/C)TAATC | intron-variant |
| Variant ID | Type | Subtype | PubMed ID |
|---|---|---|---|
| dgv305e214 | CNV | gain | 21293372 |
| esv1004944 | CNV | deletion | 20482838 |
| esv1916833 | CNV | deletion | 18987734 |
| esv2746362 | CNV | deletion | 23290073 |
| esv2746365 | CNV | deletion | 23290073 |
| esv2746366 | CNV | deletion | 23290073 |
| esv2746367 | CNV | deletion | 23290073 |
| esv2746368 | CNV | deletion | 23290073 |
| esv3349536 | CNV | insertion | 20981092 |
| esv4498 | CNV | loss | 18987735 |
| nsv1122765 | CNV | deletion | 24896259 |
| nsv1126321 | CNV | deletion | 24896259 |
| nsv1142815 | CNV | tandem duplication | 24896259 |
| nsv1148350 | CNV | insertion | 26484159 |
| nsv470318 | CNV | gain | 18288195 |
| nsv476648 | CNV | novel sequence insertion | 20440878 |
| nsv483114 | CNV | gain | 15286789 |
| nsv975530 | CNV | duplication | 23825009 |
| nsv983364 | CNV | duplication | 23825009 |
Gene Damage Index Score:
3.58;
56.10% of all genes are more intolerant (likely to be disease-causing)
Relevant External Links for HECTD4 Gene
- SNPedia medical, phenotypic, and genealogical associations of SNPs for
- HECTD4
No data available for Polymorphic Variants from UniProtKB/Swiss-Prot for HECTD4 Gene
Disorders for HECTD4 Gene
Relevant External Links for HECTD4
- Atlas of Genetics and Cytogenetics in Oncology and Haematology:
- HECTD4
No disorders were found for HECTD4 Gene.
No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for HECTD4 Gene
Publications for HECTD4 Gene
- Identification of a novel gene by whole human genome tiling array. (PMID: 23261826) Ishida H. … Tashiro K. (Gene 2013) 3 4 64
- Genome-wide association studies identify genetic loci related to alcohol consumption in Korean men. (PMID: 21270382) Baik I. … Shin C. (Am. J. Clin. Nutr. 2011) 2 3 64
- Complete sequencing and characterization of 21,243 full-length human cDNAs. (PMID: 14702039) Ota T. … Sugano S. (Nat. Genet. 2004) 3 4 64
- Prediction of the coding sequences of unidentified human genes. X. The complete sequences of 100 new cDNA clones from brain which can code for large proteins in vitro. (PMID: 9734811) Ishikawa K. … Ohara O. (DNA Res. 1998) 3 4 64
- A human interactome in three quantitative dimensions organized by stoichiometries and abundances. (PMID: 26496610) Hein M.Y. … Mann M. (Cell 2015) 3 64
Products for HECTD4 Gene
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- Browse R&D Systems for biochemical assays
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- OriGene qPCR primer pairs for HECTD4
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- Novus Biologicals Antibodies for HECTD4
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- Abcam antibodies for HECTD4
- Abcam proteins for HECTD4
- Search for Assays for HECTD4 at Abcam
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- VectorBuilder custom plasmid, inducible vectors for HECTD4
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- VectorBuilder Other custom vectors
- Mammalian expression: PiggyBac
- Mammalian Tet-on expression: plasmid
- Mammalian conditional (Cre-Lox): plasmid and PiggyBac
- Mammalian shRNA knockdown: lentiviral, adenoviral, AAV, and PiggyBac
- CRISPR: plasmid gRNA, lentiviral gRNA, and donor plasmid
- Bacterial expression: pET, pBAD, and pCS
- Yeast expression
Sources for HECTD4 Gene
- (1) GeneCards
- (2) HGNC
- (3) EntrezGene
- (4) Swiss-Prot
- (5) Ensembl
- (6) OMIM
- (7) GeneLoc
- (8) Gene Wiki
- (9) UCSC
- (10) PhosphoSitePlus
- (11) GO
- (12) TrEMBL
- (13) InterPro
- (14) ProtoNet
- (15) Blocks
- (16) MGI
- (17) IUBMB
- (18) KEGG
- (19) MINT
- (20) STRING
- (21) IntAct
- (22) Novoseek
- (23) PharmGKB
- (24) DrugBank
- (25) HMDB
- (26) UniGene
- (27) AceView
- (28) RNAdb
- (29) ASD
- (30) ECgene
- (31) GeneAnnot
- (32) CGAP SAGE
- (33) SOURCE
- (34) HomoloGene
- (35) PanEnsembl
- (36) euGenes
- (37) SGD
- (38) FlyBase
- (39) WormBase
- (40) Pseudogene
- (41) DGV
- (42) dbSNP
- (43) GenAtlas
- (44) GeneTests
- (45) HGMD
- (46) GAD
- (47) LSDB
- (48) BGMUT
- (49) HuGE
- (50) eBioscience
- (51) Atlas
- (52) Cell Signaling Technology
- (53) GenBank
- (54) H-invDB
- (55) HORDE
- (56) HUGE
- (57) IMGT
- (58) Leiden
- (59) MILLIPORE
- (60) miRBase
- (61) DME
- (62) NCBI
- (63) OriGene
- (64) PubMed
- (65) R&D Systems
- (66) TGDB
- (67) Tocris
- (68) Abcam
- (69) Novus
- (70) ProSpec
- (71) Sino Biological
- (72) GenScript
- (73) Qiagen
- (74) Cloud-Clone Corp.
- (75) Enzo Life Sciences
- (76) OCA
- (77) Proteopedia
- (78) MOPED
- (79) SPIRE
- (80) neXtProt
- (81) Reactome
- (82) GeneGo (Thomson Reuters)
- (83) fRNAdb
- (84) DISEASES
- (85) SIMAP
- (86) GenomeRNAi
- (87) LifeMap
- (88) miRTarBase
- (89) MalaCards
- (90) Invitrogen
- (91) BitterDB
- (92) Vector BioLabs
- (93) ESI-BIO
- (94) RefSeq
- (95) BioSystems
- (96) MaxQB
- (97) IUPHAR
- (98) BioGPS
- (99) Illumina
- (100) COMPARTMENTS
- (101) HOMER
- (102) PaxDb
- (103) ApexBio
- (104) Addgene
- (105) antibodies-online
- (106) CYP
- (107) NONCODE
- (108) SwitchGear Genomics
- (109) TreeFam
- (110) PathCards
- (111) GeneReviews
- (112) GeneTex
- (113) Taconic Biosciences
- (114) GTEx
- (115) ProteomicsDB
- (116) SCBT
- (117) DGIdb
- (118) ClinicalTrials
- (119) FDA Approved Drugs
- (120) RVIS
- (121) SIGNOR
- (122) diseasecard
- (123) NIH Rare Diseases
- (124) Orphanet
- (125) UMLS
- (126) GTR
- (127) Disease Ontology
- (128) Genetics Home Reference
- (129) MeSH
- (130) MedlinePlus
- (131) CDC
- (132) NINDS
- (133) NCBI Bookshelf
- (134) ClinVar
- (135) Gene Damage Index
- (136) ViGene Biosciences
- (137) HPO
- (138) UDN
- (139) VISTA
- (140) FANTOM5
- (141) ENCODE
- (142) ProSci
- (143) Horizon
- (144) NURSA
- (145) IID
- (146) Cyagen
- (147) VectorBuilder
- (148) SNPedia
- (149) BRCA Exchange
- (150) St John's Lab
- (151) CIViC
- (152) ProteoGenix
- (153) dbSUPER
- (154) TISSUES
- (155) Gene ORGANizer