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HECTD2-AS1 Gene(RNA Gene)

HECTD2 Antisense RNA 1

GCID:
GC10M091306
GIFtS:
11
Genes Participants
UDN Logo

Aliases for HECTD2-AS1 Gene

Subcategory (RNA class) for HECTD2-AS1 Gene

non-coding RNA

Quality Score for this RNA gene is

2

Aliases for HECTD2-AS1 Gene

  • HECTD2 Antisense RNA 1 2 3

External Ids for HECTD2-AS1 Gene

Summaries for HECTD2-AS1 Gene

GeneCards Summary for HECTD2-AS1 Gene

HECTD2-AS1 (HECTD2 Antisense RNA 1) is an RNA Gene, and is affiliated with the non-coding RNA class.

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for HECTD2-AS1 Gene

Genomics for HECTD2-AS1 Gene

Products:

  1. Regulatory Element

Regulatory Elements for HECTD2-AS1 Gene

Enhancers for HECTD2-AS1 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH10G091607 1.9 FANTOM5 Ensembl ENCODE dbSUPER 0.7 +2.7 2692 2.6 PKNOX1 CREB3L1 ARNT DMAP1 YY1 ZNF766 ZNF416 DEK MCM3 REST RPP30 PPP1R3C FGFBP3 BTAF1 TNKS2-AS1 HECTD2 TNKS2 HECTD2-AS1 LOC105378433
GH10G091610 1.7 FANTOM5 Ensembl ENCODE dbSUPER 0.7 -1.1 -1130 4.7 TBP ATF1 SIN3A GATA2 ELK1 RCOR1 FOS ELK4 SMARCC1 SMAD5 PPP1R3C HECTD2 TNKS2 TNKS2-AS1 HECTD2-AS1
GH10G091602 1.6 FANTOM5 Ensembl ENCODE dbSUPER 0.4 +7.0 6988 4.0 TBP CTCF LEF1 CBX3 JUN FEZF1 NFXL1 FOSL1 ZNF316 CBX5 PPP1R3C BTAF1 TNKS2 HECTD2 HECTD2-AS1 LOC105378433
GH10G091587 2.1 VISTA Ensembl ENCODE dbSUPER 0.3 +20.2 20241 7.3 PKNOX1 FOXA2 SIN3A FEZF1 ZNF766 ZNF548 FOS JUNB REST SMARCB1 RPP30 BTAF1 TNKS2-AS1 FGFBP3 HECTD2 PPP1R3C TNKS2 HECTD2-AS1 LOC105378433
GH10G091615 1.4 Ensembl ENCODE dbSUPER 0.4 -5.4 -5387 2.2 PKNOX1 ARID4B BRCA1 ZNF2 ZNF143 FOS DEK ZNF263 REST SMARCB1 HECTD2 PPP1R3C TNKS2-AS1 HECTD2-AS1
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around HECTD2-AS1 on UCSC Golden Path with GeneCards custom track

Genomic Location for HECTD2-AS1 Gene

Chromosome:
10
Start:
91,306,962 bp from pter
End:
91,611,460 bp from pter
Size:
304,499 bases
Orientation:
Minus strand

Genomic View for HECTD2-AS1 Gene

Genes around HECTD2-AS1 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
HECTD2-AS1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for HECTD2-AS1 Gene
GeneLoc Logo Genomic Neighborhood • Exon Structure • Gene Density

RefSeq DNA sequence for HECTD2-AS1 Gene

Proteins for HECTD2-AS1 Gene

Products:

  1. Antibody
  2. Protein
  3. Assay

Post-translational modifications for HECTD2-AS1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for HECTD2-AS1 Gene

Domains & Families for HECTD2-AS1 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for HECTD2-AS1 Gene

Function for HECTD2-AS1 Gene

Products:

  1. Animal Model
  2. CRISPR
  3. miRNA
  4. Inhibitory RNA
  5. Clone
  6. Cell Line
  7. Flow Cytometry

Flow Cytometry Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for HECTD2-AS1 Gene

Localization for HECTD2-AS1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for HECTD2-AS1 Gene

Pathways & Interactions for HECTD2-AS1 Gene

SuperPathways for HECTD2-AS1 Gene

PathCards logo More details on SuperPathways for HECTD2-AS1
No Data Available

Interacting Proteins for HECTD2-AS1 Gene

Gene Ontology (GO) - Biological Process for HECTD2-AS1 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for HECTD2-AS1 Gene

Drugs & Compounds for HECTD2-AS1 Gene

Products:

  1. Drug
No Compound Related Data Available

Transcripts for HECTD2-AS1 Gene

Products:

  1. CRISPR
  2. miRNA
  3. Inhibitory RNA
  4. Clone
  5. Flow Cytometry

Flow Cytometry Products

Alternative Splicing Database (ASD) splice patterns (SP) for HECTD2-AS1 Gene

No ASD Table

Relevant External Links for HECTD2-AS1 Gene

GeneLoc Exon Structure for
HECTD2-AS1
ECgene alternative splicing isoforms for
HECTD2-AS1

No data available for mRNA/cDNA for HECTD2-AS1 Gene

Expression for HECTD2-AS1 Gene

Products:

  1. Primer
No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for HECTD2-AS1 Gene

Orthologs for HECTD2-AS1 Gene

No data available for Orthologs and Evolution for HECTD2-AS1 Gene

Paralogs for HECTD2-AS1 Gene

No data available for Paralogs for HECTD2-AS1 Gene

Variants for HECTD2-AS1 Gene

Sequence variations from dbSNP and Humsavar for HECTD2-AS1 Gene

SNP ID Clin Chr 10 pos Sequence Context AA Info Type
rs1000000543 -- 91,556,098(+) CACTC(C/T)CTCCT intron-variant
rs1000005287 -- 91,330,826(+) CTGAT(-/A)AATGA intron-variant
rs1000010439 -- 91,349,979(+) CTTCC(A/T)GATGG intron-variant
rs1000015057 -- 91,562,855(+) TCAAT(C/T)ACCTC intron-variant
rs1000018277 -- 91,420,328(+) CATTT(A/G)TAATC intron-variant

Structural Variations from Database of Genomic Variants (DGV) for HECTD2-AS1 Gene

Variant ID Type Subtype PubMed ID
dgv274e212 CNV loss 25503493
esv1003018 OTHER inversion 20482838
esv1767604 OTHER inversion 17803354
esv2189509 CNV deletion 18987734
esv23967 CNV gain 19812545
esv2421381 CNV duplication 20811451
esv2739507 CNV deletion 23290073
esv2739518 CNV deletion 23290073
esv33149 CNV loss 17666407
esv3345260 OTHER inversion 20981092
esv3546675 CNV deletion 23714750
esv3546676 CNV deletion 23714750
esv3579071 CNV loss 25503493
esv3624204 CNV loss 21293372
esv3624205 CNV loss 21293372
esv3624206 CNV loss 21293372
esv3624207 CNV loss 21293372
esv3624209 CNV loss 21293372
nsv1040403 CNV gain 25217958
nsv1127131 CNV deletion 24896259
nsv433413 CNV gain 18776910
nsv436654 OTHER inversion 17901297
nsv473311 CNV novel sequence insertion 20440878
nsv551913 CNV loss 21841781
nsv551914 CNV loss 21841781
nsv7208 OTHER inversion 18451855
nsv7488 CNV insertion 18451855
nsv948134 CNV duplication 23825009
nsv950993 CNV duplication 24416366

Relevant External Links for HECTD2-AS1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
HECTD2-AS1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for HECTD2-AS1 Gene

Disorders for HECTD2-AS1 Gene

Relevant External Links for HECTD2-AS1

Atlas of Genetics and Cytogenetics in Oncology and Haematology:
HECTD2-AS1

No disorders were found for HECTD2-AS1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for HECTD2-AS1 Gene

Publications for HECTD2-AS1 Gene

  1. Genome-wide meta-analyses identify multiple loci associated with smoking behavior. (PMID: 20418890) (Nat. Genet. 2010) 3 64
  2. Diversification of transcriptional modulation: large-scale identification and characterization of putative alternative promoters of human genes. (PMID: 16344560) Kimura K. … Sugano S. (Genome Res. 2006) 3 64
  3. Generation and analysis of 280,000 human expressed sequence tags. (PMID: 8889549) Hillier L.D. … Marra M. (Genome Res. 1996) 3 64

Products for HECTD2-AS1 Gene

Sources for HECTD2-AS1 Gene

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