HEATR5A Gene
protein-coding GIFtS : 44
GCID: GC14 M031760
HEAT repeat containing 5A (Previous name: chromosome 14 open reading frame 125 ) (Previous symbol: C14orf125 )
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Aliasesfor HEATR5A gene
(According to
1 HGNC ,
2 Entrez Gene ,
3 UniProtKB/Swiss-Prot ,
4 UniProtKB/TrEMBL , 5 OMIM , 6 GeneLoc ,
7 Ensembl ,
8 DME ,
9 miRBase ,
and/or 10 fRNAdb )About This Section Aliases HEAT Repeat Containing 5A 1 2 C14orf1251 2 3 DKFZP434I17351 Chromosome 14 Open Reading Frame 1251 HEAT Repeat-Containing Protein 5A2 KIAA13163
Export aliases for HEATR5A gene to outside databases Previous GC identifers: GC14M030833 GC14M011878
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Summariesfor HEATR5A gene (According to Entrez Gene ,
Tocris Bioscience ,
Wikipedia's
Gene Wiki ,
PharmGKB ,
UniProtKB/Swiss-Prot ,
and/or
UniProtKB/TrEMBL )
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Genomic Viewsfor HEATR5A gene
(According to
GeneLoc and/or
HGNC , and/or
Entrez Gene (NCBI build 37) ,
and/or miRBase ,
Genomic Views according to
UCSC (hg19) and
Ensembl (release 69) ,
Regulatory elements and Epigenetics data according to
QIAGEN ,
SABiosciences , and/or
SwitchGear Genomics )About This Section RefSeq DNA sequence: NC_000014.8 NC_018925.1 NT_026437.12 Regulatory elements: SABiosciences Regulatory transcription factor binding sites in the HEATR5A gene promoter: HFH-3 GR AML1a GR-beta Pax-2a MEF-2A FOXI1 aMEF-2 GR-alpha Other transcription factors Search SABiosciences Chromatin IP Primers for HEATR5A Epigenetics: QIAGEN PyroMark CpG Assay predesigned Pyrosequencing DNA Methylation assays in human , mouse , rat HEATR5A
Genomic Location: Genomic View : UCSC Golden Path with GeneCards custom track Entrez Gene cytogenetic band: 14q12 Ensembl cytogenetic band: 14q12 HGNC cytogenetic band: 14q12 HEATR5A Gene in genomic location: bands according to Ensembl, locations according to
(and/or Entrez Gene and/or Ensembl if different) GeneLoc information about chromosome 14 GeneLoc Exon Structure
GeneLoc location for GC14M031760: view genomic region
(about GC identifiers )
Start:
31,760,994 bp from pter
End:
31,889,788 bp from pter
Size:
128,795 bases
Orientation:
minus strand
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Proteinsfor HEATR5A gene
(According to
1 UniProtKB ,
HORDE ,
neXtProt ,
Ensembl ,
and/or Reactome ,
Modification sites according to 2 PhosphoSitePlus ,
Specific Peptides from DME ,
Protein expression images according to data from SPIRE MOPED and PaxDb ,
RefSeq according to NCBI ,
PDB rendering according to OCA and/or Proteopedia ,
Recombinant Proteins
from
EMD Millipore ,
R&D Systems ,
GenScript ,
Enzo Life Sciences ,
OriGene ,
Novus Biologicals ,
Sino Biological ,
ProSpec , and/or
Uscn ,
Biochemical Assays by
EMD Millipore ,
R&D Systems ,
OriGene ,
GenScript ,
Cell Signaling Technology ,
Enzo Life Sciences , and/or
Uscn ,
Ontologies according to Gene
Ontology Consortium 01 Mar 2013 and
Entrez Gene ,
Antibodies by
EMD Millipore ,
R&D Systems ,
GenScript ,
Cell Signaling Technology ,
OriGene ,
Novus Biologicals ,
Thermo Fisher Scientific ,
Abcam , and/or
Uscn )
About This Section UniProtKB/Swiss-Prot: HTR5A_HUMAN, Q86XA9 (See
protein sequence )Recommended Name: HEAT repeat-containing protein 5A Size : 2040 amino acids; 222004 Da
Sequence caution : Sequence=BAA91098.1; Type=Erroneous initiation; Note=Translation N-terminally extended;
Secondary accessions : Q68DD8 Q6P3S5 Q6P5R9 Q9H8D7 Q9NXB7 Q9P2N0 Q9UFQ3Alternative splicing : 3 isoforms : Q86XA9-1 Q86XA9-2 Q86XA9-3 (No experimental confirmation available)Explore the universe of human proteins at neXtProt for HEATR5A: NX_Q86XA9 Post-translational modifications:
View modification sites using PhosphoSitePlus 2 View neXtProt modification sites for NX_Q86XA9 HEATR5A Protein expression data from MOPED and PaxDb : About this image
REFSEQ proteins: NP_056288.2 ENSEMBL proteins: ENSP00000437968 ENSP00000439979 ENSP00000450296 ENSP00000446884 ENSP00000447708 ENSP00000371903 ENSP00000450262 ENSP00000374611 ENSP00000405407 ENSP00000408681 ENSP00000384646 Human Recombinant Protein Products: HEATR5A Antibody Products: Assay Products for HEATR5A:
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Protein
Domains / Familiesfor HEATR5A gene (According to InterPro , ProtoNet ,
UniProtKB , and/or BLOCKS ,
Sets of similar genes according to GeneDecks )
About This Section
HEATR5A for domains About GeneDecksing 2 InterPro domains/families :
Graphical View of Domain Structure for InterPro Entry Q86XA9 ProtoNet protein and cluster: Q86XA9
1 Blocks protein family : IPB000357 HEAT repeat UniProtKB/Swiss-Prot: HTR5A_HUMAN, Q86XA9 Similarity : Belongs to the HEATR5 familySimilarity : Contains 2 HEAT repeats
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Functionfor HEATR5A gene
(According to 1 UniProtKB ,
Genatlas ,
LifeMap Discovery™ ,
IUBMB , and/or
2 DME ,
Human phenotypes from GenomeRNAi ,
Animal models from MGI Mar 06 2013,
bound targets from SABiosciences ,
miRNA Gene Targets from miRTarBase
shRNA from
OriGene ,
RNAi from
EMD Millipore ,
siRNAs from
OriGene ,
QIAGEN ,
microRNA from QIAGEN ,
Gene Editing from DNA2.0 ,
Clones from EMD Millipore ,
OriGene ,
SwitchGear Genomics ,
GenScript ,
Sino Biological ,
DNA2.0 ,
and Vector BioLabs ,
Cell Lines from GenScript ,
LifeMap BioReagents ,
In Situ Hybridization Assays from Advanced Cell Diagnostics ,
Ontologies according to Gene Ontology Consortium 01 Mar 2013 via
Entrez Gene .)
About This Section Clone Products: Browse Clones for the Expression of Recombinant Proteins Available from EMD Millipore OriGene Myc/DDK tagged cDNA clones in CMV expression vector in human , mouse , rat for HEATR5A (see all 2 ) OriGene untagged cDNA clones in CMV expression vector in human , mouse , rat for HEATR5AOriGene custom cloning services – gene synthesis, subcloning, mutagenesis,
variant library, vector shuttling GenScript: all cDNA clones in your preferred vector: HEATR5A (NM_015473 ) Browse Sino Biological Human cDNA Clones DNA2.0 Custom Codon Optimized Gene
Synthesis Service for HEATR5A Vector BioLabs ready-to-use adenovirus/AAV for human , mouse , rat HEATR5A
In Situ Assay Products: Advanced Cell Diagnostics RNAscope RNA in situ hybridization assays for HEATR5A
2 GenomeRNAi human phenotypes for HEATR5A :
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Pathways & Interactionsfor HEATR5A gene
(Pathways according to
EMD Millipore ,
R&D Systems ,
Cell Signaling Technology ,
KEGG ,
PharmGKB ,
BioSystems ,
Reactome ,
Tocris Bioscience ,
GeneGo (Thomson Reuters) ,
QIAGEN ,
and/or UniProtKB ,
Sets of similar genes according to GeneDecks ,
Interaction Networks according to
SABiosciences ,
and/or STRING ,
Interactions according to 1 UniProtKB ,
2 MINT ,
3 I2D , and/or
4 STRING ,
with links to IntAct and
Ensembl ,
Ontologies according to Gene Ontology Consortium 01 Mar 2013 via
Entrez Gene) .
About This Section Interactions: Search SABiosciences Gene Network CentralTM Interacting Genes and Proteins Networks for HEATR5A STRING Interaction
Network Preview (showing 1 interactants - click image to see more details)1 Interacting protein for HEATR5A (ENSP00000408681 4 ) via UniProtKB, MINT, STRING , and/or I2D About this table
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Drugs & Compoundsfor HEATR5A gene (Chemical Compounds according to UniProtKB , Enzo Life Sciences ,
EMD Millipore , Tocris Bioscience
HMDB ,
BitterDB , and/or
Novoseek , and Drugs according to
DrugBank ,
Enzo Life Sciences , and/or
PharmGKB , with drugs/clinical trials/news
search links to CenterWatch )
About This Section Browse Tocris compounds for HEATR5A Search CenterWatch for drugs/clinical trials and news about HEATR5A / HTR5A
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Transcriptsfor HEATR5A gene (Secondary structures according to
fRNAdb ,
GenBank/EMBL/DDBJ Accessions according to
Unigene
(Build 235 Homo sapiens; Mar 10 2013) or GenBank , RefSeq according to Entrez Gene ,
DOTS (version 10), and/or
AceView ,
transcript ids from Ensembl
with links to UCSC ,
exon structure from GeneLoc ,
alternative splicing isoforms according to ASD and/or
ECgene ,
RNAi Products from
EMD Millipore ,
siRNAs from
OriGene ,
QIAGEN ,
shRNA from
OriGene ,
microRNA from QIAGEN ,
Tagged/untagged cDNA clones from
OriGene ,
SwitchGear Genomics ,
GenScript ,
DNA2.0 ,
Vector BioLabs ,
Primers from
OriGene ,
SABiosciences , and/or
QIAGEN
)About This Section REFSEQ mRNAs for HEATR5A gene: NM_015473.3 Unigene Cluster for HEATR5A:
HEAT repeat containing 5A Hs.370299 [show with all ESTs ] Unigene Representative Sequence: NM_015473 13 Ensembl transcripts including schematic representations, and UCSC links where relevant : ENST00000543095 (uc001wrf.4 uc001wrh.3 ) ENST00000551414 ENST00000538864 ENST00000550366 ENST00000550819 ENST00000549719 ENST00000552500 ENST00000382464 ENST00000549184 ENST00000389961 ENST00000439348 (uc010ami.3 ) ENST00000439727 (uc001wrg.1 )ENST00000404677 Clone Products: OriGene Myc/DDK tagged cDNA clones in CMV expression vector in human , mouse , rat for HEATR5A (see all 2 ) OriGene untagged cDNA clones in CMV expression vector in human , mouse , rat for HEATR5AOriGene custom cloning services – gene synthesis, subcloning, mutagenesis,
variant library, vector shuttling GenScript: all cDNA clones in your preferred vector: HEATR5A (NM_015473 ) DNA2.0 Custom Codon Optimized Gene
Synthesis Service for HEATR5A Vector BioLabs ready-to-use adenovirus/AAV for human , mouse , rat HEATR5A
Additional cDNA sequence: AB037737.1 AK000343.1 AK023789.1 AK092400.1 AK092933.1 AL117511.1 BC045764.1 BC063867.1 CR749444.1
8 DOTS entries : DT.100755184 DT.311164
DT.95265167 DT.75178407 DT.100016280 DT.70100616 DT.91693740 DT.100755185 24/79 AceView cDNA sequences (see all 79 ):
BG221278 CA841384 AW262742 AA314462 AI582587 BC063867 CA429398 AU140458 AA504433 BE858708 AI379423 BU624084 AA481660 BM126853 BF435286 BX280302 AW593373 BX494327 BC045764 BM474430 AB037737 AX747523 CB216644 BQ224070 GeneLoc Exon Structure 5/8 Alternative Splicing Database (ASD) splice patterns (SP) for HEATR5A (see all 8 ) About this scheme ExUns: 1a · 1b ^ 2a · 2b ^ 3 ^ 4 ^ 5 ^ 6 ^ 7 ^ 8 ^ 9 ^ 10 ^ 11 ^ 12 ^ 13a · 13b ^ 14 ^ 15 ^ 16 ^ 17a · 17b ^ 18a · 18b · 18c ^ 19 ^ 20 ^ SP1 :     -                               -                   SP2 :                                                     SP3 :                                                     SP4 :                                                     SP5 :                                                    
ExUns: 21 ^ 22 ^ 23 ^ 24a · 24b ^ 25 ^ 26a · 26b ^ 27a · 27b ^ 28a · 28b · 28c ^ 29 ^ 30 SP1 :                               SP2 :                               SP3 :                               SP4 :                     -           SP5 :                              
ECgene alternative splicing isoforms for HEATR5A
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Expression for HEATR5A gene
(RNA expression data according to
H-InvDB ,
NONCODE ,
miRBase , and
RNAdb ,
Expression images according to data from
BioGPS ,
Illumina Human BodyMap , and
CGAP
SAGE ,
Sets of similar genes according to GeneDecks ,
in vivo and in vitro expression data from LifeMap Discovery™ ,
plus additional links to
Genevestigator , and/or
SOURCE , and/or
BioGPS , and/or
UniProtKB ,
PCR Arrays from
SABiosciences ,
Primers from
OriGene ,
SABiosciences , and/or
QIAGEN ,
In Situ Hybridization Assays from Advanced Cell Diagnostics )
About This Section HEATR5A expression in normal human tissues (normalized intensities) See probesets specificity/sensitivity at GeneAnnot About this image BioGPS CGAP TAG: TCAGAATTGA
About this image HEATR5A expression in embryonic tissues and stem cells Expression by the Database of Embryonic development, Stem cell research, and
Regenerative medicine About this table 1 LifeMap In Vivo Development Anatomical Compartment/Cell Tissue Anatomical Compartment
Cell Category (developmental path) Brain Medulla Oblongata Brain Expression: Positive Negative
Selective markerExperimental details:
Curated
Microarrays
In-situ hybridization
See HEATR5A Protein Expression from SPIRE MOPED and PaxDB Genevestigator expression for HEATR5A SOURCE GeneReport for Unigene cluster: Hs.370299 SABiosciences Custom PCR Arrays for HEATR5A Primer Products: OriGene genome-wide validated SYBR primer pairs in human , mouse , rat for HEATR5ABrowse OriGene validated miRNA SYBR primer pairs SABiosciences RT2 qPCR Primer Assay in human , mouse , rat HEATR5A QIAGEN QuantiTect SYBR Green Assays in human , mouse , rat HEATR5A QIAGEN QuantiFast Probe-based Assays in human , mouse , rat HEATR5A In Situ Assay Products: Advanced Cell Diagnostics RNAscope RNA in situ hybridization assays for HEATR5A
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Orthologsfor HEATR5A gene
(Orthologs according to
1,2 HomoloGene (2 older version, for species not in 1 newer version),
3 euGenes ,
4 SGD
,
5 MGI Mar 06 2013,
with possible further links to
Flybase
and/or
WormBase ,
and/or
6 Ensembl pan taxonomic compara ,
Gene Trees according to Ensembl and
TreeFam )
About This Section
This gene was present in the common ancestor of eukaryotes.
Orthologs for HEATR5A gene from 8/25 species (see all 25 ) About this table
ENSEMBL Gene Tree for HEATR5A (if available)TreeFam Gene Tree for HEATR5A (if available)
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Paralogsfor HEATR5A gene (Paralogs according to
1 HomoloGene , 2 Ensembl , and 3 SIMAP , Pseudogenes according to 4 Pseudogene.org Build 68)About This Section Paralogs for HEATR5A gene HEATR5B 2 1 SIMAP similar gene for HEATR5A using alignment to 9 protein entries: HTR5A_HUMAN (see all proteins ):HEATR5B
HEATR5A for paralogs About GeneDecksing
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Genomic Variantsfor HEATR5A gene (SNPs/Variants according to the
1 NCBI SNP Database ,
2 Ensembl ,
3 PupaSUITE ,
UniProtKB , and
DNA2.0 ,
Linkage Disequilibrium by HapMap ,
Structural Variations(CNVs/InDels/Inversions) from the Database of Genomic Variants , Mutations from the Human Gene
Mutation Database (HGMD) and the Locus Specific Mutation
Databases (LSDB) , Blood group antigen gene mutations by BGMUT ,
Resequencing Primers from QIAGEN ,
Cancer Mutation PCR Arrays and Assays and Copy Number PCR Arrays from SABiosciences )
About This Section
Genomic Data Transcription Related Data Allele Frequencies SNP ID Valid Clinical significance Chr 14 pos Sequence # AA Chg Type More # Allele freq Pop Total sample More
HapMap Linkage Disequilibrium report for HEATR5A (31760994 - 31889788 bp)
Structural Variations (Copy Number Variations, Insertions/Deletions, Inversions) Database of Genomic Variants (DGV): 8 variations for HEATR5A 2 CNVs : 7031 101913 5 Indels : 25386 11715 40029 41541 45261 1 Inversion : 37156
SABiosciences Cancer Mutation PCR Assays
QIAGEN SeqTarget long-range PCR primers in human , mouse , rat for resequencing HEATR5A
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Disorders
/ Diseasesfor HEATR5A gene
(in which this Gene is Involved, According to MalaCards ,
OMIM, UniProtKB ,
the University of Copenhagen DISEASES
database ,
Genatlas , GeneTests ,
GAD ,
HuGE Navigator ,
and/or TGDB .)
About This Section --
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Publicationsfor HEATR5A gene (in
PubMed .
Associations of this gene to articles via
1 Entrez Gene ,
2 UniProtKB/Swiss-Prot ,
3 HGNC ,
4 GAD ,
5 PharmGKB ,
6 HMDB ,
7 DrugBank ,
8 UniProtKB/TrEMBL ,
9 Novoseek , and/or
10 fRNAdb )
About This Section PubMed articles for HEATR5A gene, integrated from 9 sources (see all 13 ): (articles sorted by number of sources associating them with HEATR5A) Utopia : connect your pdf to the dynamic world of online information
Complete sequencing and characterization of 21,243 full-length human cDNAs. (PubMed id 14702039) 1 , 2 Ota T.... Sugano S. (2004) Prediction of the coding sequences of unidentified human genes. XVI. The complete sequences of 150 new cDNA clones from brain which code for large proteins in vitro. (PubMed id 10718198) 1 , 2 Nagase T.... Ohara O. (2000) A census of human soluble protein complexes. (PubMed id 22939629) 1 Havugimana P.C....Emili A. (2012) Methods for quantification of in vivo changes in prote in ubiquitination following proteasome and deubiquitinase inhibition. (PubMed id 22505724) 1 Udeshi N.D....Carr S.A. (2012) Systematic and quantitative assessment of the ubiquiti n-modified proteome. (PubMed id 21906983) 1 Kim W....Gygi S.P. (2011) Initial characterization of the human central proteome. (PubMed id 21269460) 2 Burkard T.R.... Colinge J. (2011) Mass spectrometric analysis of lysine ubiquitylation r eveals promiscuity at site level. (PubMed id 21139048) 1 Danielsen J.M....Nielsen M.L. (2011) Kinase-selective enrichment enables quantitative phosphoproteomics of the kinome across the cell cycle. (PubMed id 18691976) 2 Daub H.... Mann M. (2008) The full-ORF clone resource of the German cDNA consortium. (PubMed id 17974005) 2 Bechtel S.... Schupp I. (2007) The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC). (PubMed id 15489334) 2 Gerhard D.S....Malek J. (2004)
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External Searches for HEATR5A gene
(in PubMed ,
OMIM , and NCBI Bookshelf ) About This Section
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Genome Databases showing HEATR5A gene
(According to
Entrez Gene ,
HGNC ,
AceView ,
euGenes ,
Ensembl ,
miRBase ,
ECgene ,
Kegg ,
and/or
H-InvDB )
About This Section
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Other Databases showing HEATR5A gene
(According to HUGE )
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Specialized Databases showing HEATR5A gene (According to PharmGKB ,
ATLAS , HORDE , IMGT , LEIDEN , UniProtKB/Swiss-Prot , and/or UniProtKB/TrEMBL ,Wikipedia and/or GeneReviews via UniProtKB/Swiss-Prot )About This Section
Name Description
PharmGKB entry for HEATR5A Pharmacogenomics, SNPs, Pathways
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About This Section Patent Information for HEATR5A gene: Search GeneIP for patents involving HEATR5A GeneCards and IP: Japan Patent Office Licenses GeneCards European Patent Office Licenses GeneCards Improving the IP Search
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Productsfor HEATR5A gene (Antibodies, recombinant proteins, and assays from EMD Millipore , R&D Systems , OriGene , QIAGEN , GenScript , Cell Signaling Technology , SABiosciences , Novus Biologicals , Sino Biological , Enzo Life Sciences , Abcam , ProSpec , Uscn , Thermo Fisher Scientific , Gene Editing from DNA2.0 , Clones from EMD Millipore , OriGene , GenScript , Sino Biological , DNA2.0 , SwitchGear Genomics , Vector BioLabs , Cell lines from GenScript and LifeMap BioReagents , PCR Arrays from SABiosciences , Drugs and/or compounds from EMD Millipore , Tocris Bioscience , and/or
Enzo Life Sciences ), In Situ Hybridization Assays from Advanced Cell Diagnostics About This Section
Browse OriGene Antibodies OriGene shRNA RFP for HEATR5A OriGene 29mer shRNA kits in GFP-retroviral vector in human , mouse , rat for HEATR5A OriGene genome-wide validated SYBR primer pairs in human , mouse , rat for HEATR5A Browse OriGene Protein Over-expression Lysates Browse OriGene Fluorogenic Cell Assay Kits OriGene siRNA for HEATR5A OriGene 3'-UTR Clone for HEATR5A OriGene untagged cDNA clones in CMV expression vector in human , mouse , rat for HEATR5A OriGene Myc/DDK tagged cDNA clones in CMV expression vector in human , mouse , rat for HEATR5A Browse OriGene GFP tagged cDNA clones in CMV expression vector Browse OriGene MicroRNA Expression Plasmids Browse OriGene basic RS shRNAs Browse OriGene validated miRNA SYBR primer pairs Browse OriGene full length recombinant human proteins expressed in human HEK293 cells OriGene custom cloning services - gene synthesis, subcloning, mutagenesis,
variant library, vector shuttling OriGene Custom Antibody Services for HEATR5A OriGene Custom Protein Services for HEATR5A OriGene Custom Immunoassay Development
QIAGEN Custom miScript Target Protector blocks miRNA-binding site of in human, mouse, rat HEATR5A QIAGEN SeqTarget long-range PCR primers in human , mouse , rat for resequencing HEATR5A QIAGEN PyroMark CpG Assay predesigned Pyrosequencing DNA Methylation assays in human , mouse , rat HEATR5A QIAGEN FlexiTube/FlexiPlate siRNA for gene silencing in human , mouse , rat HEATR5A QIAGEN QuantiFast Probe-based Assays in human , mouse , rat HEATR5A QIAGEN QuantiTect SYBR Green Assays in human , mouse , rat HEATR5A
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HEATR5A Proteins, Antibodies, CLIAs, and ELISAs
Advanced Cell Diagnostics RNAscope RNA in situ hybridization assays for HEATR5A
Search ThermoFisher Antibodies for HEATR5A
Vector BioLabs ready-to-use adenovirus/AAV for human , mouse , rat HEATR5A
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Aliases for HEATR5A
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Disorders / Diseases for HEATR5A
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Expression for HEATR5A
Function for HEATR5A
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