Aliases for HDHD5-AS1 Gene
Subcategory (RNA class) for HDHD5-AS1 Gene
non-coding RNA
Quality Score for this RNA gene is
3
Aliases for HDHD5-AS1 Gene
External Ids for HDHD5-AS1 Gene
- HGNC: 1842
- Entrez Gene: 100130717
- Ensembl: ENSG00000185837
Previous HGNC Symbols for HDHD5-AS1 Gene
- CECR4
- CECR5-AS1
Summaries for HDHD5-AS1 Gene
GeneCards Summary for HDHD5-AS1 Gene
HDHD5-AS1 (HDHD5 Antisense RNA 1) is an RNA Gene, and is affiliated with the non-coding RNA class. Diseases associated with HDHD5-AS1 include Cat Eye Syndrome.
No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for HDHD5-AS1 Gene
Genomics for HDHD5-AS1 Gene
Regulatory Elements for HDHD5-AS1 Gene
Enhancers for HDHD5-AS1 Gene
| GeneHancer Identifier | Enhancer Score | Enhancer Sources | Gene-Enhancer Score | TSS distance (kb) | Number of Genes Away | Size (kb) | Transcription Factor Binding Sites within enhancer | Gene Targets for Enhancer |
|---|---|---|---|---|---|---|---|---|
| GH22G017999 | 1.4 | ENCODE dbSUPER | 11.2 | +841.4 | 841437 | 3.2 | HDGF PKNOX1 MLX CREB3L1 ARNT WRNIP1 ARID4B SIN3A ZNF2 YY1 | MICAL3 ENSG00000093100 HDHD5-AS1 ENSG00000236890 HDHD5 ENSG00000234913 ENSG00000235445 |
| GH22G017131 | 0.6 | ENCODE | 12.7 | -27.1 | -27118 | 0.7 | CTCF MXI1 RFX1 BMI1 ZIC2 EP300 ZNF316 GLIS1 MAFK EMSY | HDHD5-AS1 HDHD5 CECR2 ADA2 CECR3 LINC01664 GC22P017136 |
| GH22G017963 | 1.3 | Ensembl ENCODE dbSUPER | 4.6 | +805.2 | 805187 | 2.2 | BCOR CTCF MXI1 TAL1 MAX SIN3A EBF1 TCF12 ZNF121 FOXM1 | MICAL3 HDHD5-AS1 PIR53397 MIR648 |
| GH22G017960 | 0.5 | dbSUPER | 4.6 | +801.8 | 801797 | 1.7 | ZFHX2 ZNF316 GLIS1 ZIC2 | MICAL3 HDHD5-AS1 PIR53397 MIR648 |
| GH22G017961 | 0.5 | dbSUPER | 4.6 | +801.7 | 801706 | 1.7 | ZFHX2 ZNF316 GLIS1 ZIC2 | MICAL3 HDHD5-AS1 PIR53397 MIR648 |
- Elite enhancer and/or Elite enhancer-gene association
Download GeneHancer data dump
Enhancers around HDHD5-AS1 on UCSC Golden Path with GeneCards custom track
Regulatory Element Products
Genomic Location for HDHD5-AS1 Gene
- Chromosome:
- 22
- Start:
- 17,159,384 bp from pter
- End:
- 17,165,445 bp from pter
- Size:
- 6,062 bases
- Orientation:
- Plus strand
Genomic View for HDHD5-AS1 Gene
Genes around HDHD5-AS1 on UCSC Golden Path with GeneCards custom track
- Cytogenetic band:
-
- 22q11.1 by Ensembl
- 22q11.1 by Entrez Gene
- 22q11.1 by HGNC
HDHD5-AS1 Gene in genomic location: bands according to
Ensembl, locations according to GeneLoc
(and/or Entrez Gene and/or Ensembl if different)
Genomic Neighborhood
• Exon Structure
• Gene Density
RefSeq DNA sequence for HDHD5-AS1 Gene
Proteins for HDHD5-AS1 Gene
Post-translational modifications for HDHD5-AS1 Gene
No Post-translational modifications
Antibody Products
- Search GeneTex for Antibodies for HDHD5-AS1
Protein Products
- Search Origene for Purified Proteins, MassSpec and Protein Over-expression Lysates for HDHD5-AS1
- Origene Custom Protein Services for HDHD5-AS1
- Search GeneTex for Proteins for HDHD5-AS1
Assay Products
No data available for DME Specific Peptides for HDHD5-AS1 Gene
Domains & Families for HDHD5-AS1 Gene
Graphical View of Domain Structure for InterPro Entry
No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for HDHD5-AS1 Gene
Function for HDHD5-AS1 Gene
Animal Model Products
- Taconic Biosciences: Generate A Custom CRISPR Mouse Model For Your Study
- Search ViGene Biosciences for HDHD5-AS1
CRISPR Products
- Browse CRISPR knockouts for HDHD5-AS1
miRNA Products
- Search ViGene Biosciences for HDHD5-AS1
Inhibitory RNA Products
- Search ViGene Biosciences for HDHD5-AS1
Cell Line Products
- Search ViGene Biosciences for HDHD5-AS1
Flow Cytometry Products
No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for HDHD5-AS1 Gene
Localization for HDHD5-AS1 Gene
No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for HDHD5-AS1 Gene
Transcripts for HDHD5-AS1 Gene
mRNA/cDNA for HDHD5-AS1 Gene
- (2) Ensembl transcripts including schematic representations, and UCSC links where relevant :
CRISPR Products
- Browse CRISPR knockouts for HDHD5-AS1
miRNA Products
- Search ViGene Biosciences for HDHD5-AS1
Inhibitory RNA Products
- Search ViGene Biosciences for HDHD5-AS1
Flow Cytometry Products
Expression for HDHD5-AS1 Gene
No Expression Related Data Available
Primer Products
No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for HDHD5-AS1 Gene
Orthologs for HDHD5-AS1 Gene
No data available for Orthologs for HDHD5-AS1 Gene
Paralogs for HDHD5-AS1 Gene
No data available for Paralogs for HDHD5-AS1 Gene
Variants for HDHD5-AS1 Gene
| SNP ID | Clin | Chr 22 pos | Sequence Context | AA Info | Type |
|---|---|---|---|---|---|
| rs1000392545 | -- | 17,158,718(+) | CACTT(-/G)GGGGC | intron-variant, upstream-variant-2KB, utr-variant-5-prime | |
| rs1001097445 | -- | 17,162,677(+) | TAGAT(G/T)CTCTG | intron-variant | |
| rs1001149751 | -- | 17,162,326(+) | ATTAC(A/C)CTTTG | intron-variant | |
| rs1001325462 | -- | 17,157,825(+) | ACCAG(A/G)CTACC | intron-variant, upstream-variant-2KB | |
| rs1002101704 | -- | 17,161,229(+) | CAACA(C/G)AGTGA | intron-variant, upstream-variant-2KB |
| Variant ID | Type | Subtype | PubMed ID |
|---|---|---|---|
| esv3647209 | CNV | gain | 21293372 |
| nsv1064641 | CNV | gain | 25217958 |
| nsv1067241 | CNV | loss | 25217958 |
| nsv509805 | CNV | insertion | 20534489 |
| nsv828924 | CNV | gain | 20364138 |
Relevant External Links for HDHD5-AS1 Gene
- SNPedia medical, phenotypic, and genealogical associations of SNPs for
- HDHD5-AS1
No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for HDHD5-AS1 Gene
Disorders for HDHD5-AS1 Gene
| Disorder | Aliases | PubMed IDs |
|---|---|---|
| cat eye syndrome |
|
|
Search HDHD5-AS1 in MalaCards
View complete list of genes associated with diseases
Relevant External Links for HDHD5-AS1
- Atlas of Genetics and Cytogenetics in Oncology and Haematology:
- HDHD5-AS1
No data available for UniProtKB/Swiss-Prot and Genatlas for HDHD5-AS1 Gene
Publications for HDHD5-AS1 Gene
- Analysis of the cat eye syndrome critical region in humans and the region of conserved synteny in mice: a search for candidate genes at or near the human chromosome 22 pericentromere. (PMID: 11381032) Footz T.K. … McDermid H.E. (Genome Res. 2001) 2 3 64
Products for HDHD5-AS1 Gene
- Browse R&D Systems for Antibodies
- Browse R&D Systems for Human Recombinant Proteins
- Browse R&D Systems for biochemical assays
- Browse Primary Antibodies
- Browse Proteins and Enzymes
- Browse ELISAs
- Browse Activity Assays
- Browse cDNA Clones
- Browse Cell Culture Products
- Browse Cell Selection and Detection Kits
- Browse DNA Damage and Repair Kits
- Browse ELISpot/FluoroSpot Kits and Development Modules
- Browse Flow Cytometry Kits
- Browse Immunoprecipitation Assays
- Browse Luminex Assays
- Browse Peptides
- Browse Proteome Profiler Antibody Arrays
- Browse Small Molecules
- Browse OriGene Antibodies
- Custom Antibody Services
- Browse OriGene ELISA Kits
- Custom Assay Services
- Search Origene for Purified Proteins, MassSpec and Protein Over-expression Lysates for HDHD5-AS1
- Origene Custom Protein Services for HDHD5-AS1
- Browse OriGene Inhibitory RNA Products For HDHD5-AS1
- Browse OriGene qPCR primer pairs and template standards
- Browse CRISPR knockouts for HDHD5-AS1
- Custom cloning services - gene synthesis, subcloning, mutagenesis, variant library, vector shuttling
- Browse OriGene miRNA Products For HDHD5-AS1
- GenScript: Custom all cDNA clones Services for HDHD5-AS1
- GenScript Custom Purified and Recombinant Proteins Services for HDHD5-AS1
- GenScript Custom Assay Services for HDHD5-AS1
- GenScript Custom overexpressing Cell Line Services for HDHD5-AS1
- Browse GenScript CRISPR for HDHD5-AS1
- Design optimal peptide antigens
- CloneReady with Over 120,000 Genes
- Gene Synthesis: Any Gene in Any Vector
- Vector-based siRNA and miRNA, Ready for Transfection
- Gene Mutant Library, Variants up to 10^11
- Plasmid Preparation
- GenScript Custom Peptide Services for HDHD5-AS1
- Browse Sino Biological cDNA Clones
- Browse Sino Biological Cell Lysates
- Browse Sino Biological Proteins
- Sino Biological Antibodies
- Sino Biological ELISA Kits and Pair Sets
- Sino Biological Cell Lysates
- Sino Biological qPCR Primers
- Sino Biological CRO Services for Proteins, Antibodies and Genes
- Sino Biological Transfection Reagents
- Novus Biologicals
- Novus Biologicals Tissue Microarrays
- Cyagen custom Knockout/knockin (KOKI) mouse models for HDHD5-AS1
- VectorBuilder custom plasmid, inducible vectors for HDHD5-AS1
- VectorBuilder custom lentivirus, adenovirus, AAV vector/virus packaging for HDHD5-AS1
- VectorBuilder Other custom vectors
- Mammalian expression: PiggyBac
- Mammalian Tet-on expression: plasmid
- Mammalian conditional (Cre-Lox): plasmid and PiggyBac
- Mammalian shRNA knockdown: lentiviral, adenoviral, AAV, and PiggyBac
- CRISPR: plasmid gRNA, lentiviral gRNA, and donor plasmid
- Bacterial expression: pET, pBAD, and pCS
- Yeast expression
Sources for HDHD5-AS1 Gene
- (1) GeneCards
- (2) HGNC
- (3) EntrezGene
- (4) Swiss-Prot
- (5) Ensembl
- (6) OMIM
- (7) GeneLoc
- (8) Gene Wiki
- (9) UCSC
- (10) PhosphoSitePlus
- (11) GO
- (12) TrEMBL
- (13) InterPro
- (14) ProtoNet
- (15) Blocks
- (16) MGI
- (17) IUBMB
- (18) KEGG
- (19) MINT
- (20) STRING
- (21) IntAct
- (22) Novoseek
- (23) PharmGKB
- (24) DrugBank
- (25) HMDB
- (26) UniGene
- (27) AceView
- (28) RNAdb
- (29) ASD
- (30) ECgene
- (31) GeneAnnot
- (32) CGAP SAGE
- (33) SOURCE
- (34) HomoloGene
- (35) PanEnsembl
- (36) euGenes
- (37) SGD
- (38) FlyBase
- (39) WormBase
- (40) Pseudogene
- (41) DGV
- (42) dbSNP
- (43) GenAtlas
- (44) GeneTests
- (45) HGMD
- (46) GAD
- (47) LSDB
- (48) BGMUT
- (49) HuGE
- (50) eBioscience
- (51) Atlas
- (52) Cell Signaling Technology
- (53) GenBank
- (54) H-invDB
- (55) HORDE
- (56) HUGE
- (57) IMGT
- (58) Leiden
- (59) MILLIPORE
- (60) miRBase
- (61) DME
- (62) NCBI
- (63) OriGene
- (64) PubMed
- (65) R&D Systems
- (66) TGDB
- (67) Tocris
- (68) Abcam
- (69) Novus
- (70) ProSpec
- (71) Sino Biological
- (72) GenScript
- (73) Qiagen
- (74) Cloud-Clone Corp.
- (75) Enzo Life Sciences
- (76) OCA
- (77) Proteopedia
- (78) MOPED
- (79) SPIRE
- (80) neXtProt
- (81) Reactome
- (82) GeneGo (Thomson Reuters)
- (83) fRNAdb
- (84) DISEASES
- (85) SIMAP
- (86) GenomeRNAi
- (87) LifeMap
- (88) miRTarBase
- (89) MalaCards
- (90) Invitrogen
- (91) BitterDB
- (92) Vector BioLabs
- (93) ESI-BIO
- (94) RefSeq
- (95) BioSystems
- (96) MaxQB
- (97) IUPHAR
- (98) BioGPS
- (99) Illumina
- (100) COMPARTMENTS
- (101) HOMER
- (102) PaxDb
- (103) ApexBio
- (104) Addgene
- (105) antibodies-online
- (106) CYP
- (107) NONCODE
- (108) SwitchGear Genomics
- (109) TreeFam
- (110) PathCards
- (111) GeneReviews
- (112) GeneTex
- (113) Taconic Biosciences
- (114) GTEx
- (115) ProteomicsDB
- (116) SCBT
- (117) DGIdb
- (118) ClinicalTrials
- (119) FDA Approved Drugs
- (120) RVIS
- (121) SIGNOR
- (122) diseasecard
- (123) NIH Rare Diseases
- (124) Orphanet
- (125) UMLS
- (126) GTR
- (127) Disease Ontology
- (128) Genetics Home Reference
- (129) MeSH
- (130) MedlinePlus
- (131) CDC
- (132) NINDS
- (133) NCBI Bookshelf
- (134) ClinVar
- (135) Gene Damage Index
- (136) ViGene Biosciences
- (137) HPO
- (138) UDN
- (139) VISTA
- (140) FANTOM5
- (141) ENCODE
- (142) ProSci
- (143) Horizon
- (144) NURSA
- (145) IID
- (146) Cyagen
- (147) VectorBuilder
- (148) SNPedia
- (149) BRCA Exchange
- (150) St John's Lab
- (151) CIViC
- (152) ProteoGenix
- (153) dbSUPER
- (154) TISSUES
- (155) Gene ORGANizer