Free for academic non-profit institutions. Other users need a Commercial license

Aliases for HDHD5-AS1 Gene

Subcategory (RNA class) for HDHD5-AS1 Gene

non-coding RNA

Quality Score for this RNA gene is

3

Aliases for HDHD5-AS1 Gene

  • HDHD5 Antisense RNA 1 2 3
  • Cat Eye Syndrome Chromosome Region, Candidate 4 (Non-Protein Coding) 2 3
  • CECR5 Antisense RNA 1 (Non-Protein Coding) 2 3
  • CECR5 Antisense RNA 1 2 5
  • CECR5-AS1 3 5
  • Cat Eye Syndrome Chromosome Region, Candidate 4 2
  • Non-Protein Coding RNA 17 2
  • NCRNA00017 3
  • CECR4 3

External Ids for HDHD5-AS1 Gene

Previous HGNC Symbols for HDHD5-AS1 Gene

  • CECR4
  • CECR5-AS1

Summaries for HDHD5-AS1 Gene

GeneCards Summary for HDHD5-AS1 Gene

HDHD5-AS1 (HDHD5 Antisense RNA 1) is an RNA Gene, and is affiliated with the non-coding RNA class. Diseases associated with HDHD5-AS1 include Cat Eye Syndrome.

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for HDHD5-AS1 Gene

Genomics for HDHD5-AS1 Gene

Regulatory Elements for HDHD5-AS1 Gene

Enhancers for HDHD5-AS1 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH22G017999 1.4 ENCODE dbSUPER 11.2 +841.4 841437 3.2 HDGF PKNOX1 MLX CREB3L1 ARNT WRNIP1 ARID4B SIN3A ZNF2 YY1 MICAL3 ENSG00000093100 HDHD5-AS1 ENSG00000236890 HDHD5 ENSG00000234913 ENSG00000235445
GH22G017131 0.6 ENCODE 12.7 -27.1 -27118 0.7 CTCF MXI1 RFX1 BMI1 ZIC2 EP300 ZNF316 GLIS1 MAFK EMSY HDHD5-AS1 HDHD5 CECR2 ADA2 CECR3 LINC01664 GC22P017136
GH22G017963 1.3 Ensembl ENCODE dbSUPER 4.6 +805.2 805187 2.2 BCOR CTCF MXI1 TAL1 MAX SIN3A EBF1 TCF12 ZNF121 FOXM1 MICAL3 HDHD5-AS1 PIR53397 MIR648
GH22G017960 0.5 dbSUPER 4.6 +801.8 801797 1.7 ZFHX2 ZNF316 GLIS1 ZIC2 MICAL3 HDHD5-AS1 PIR53397 MIR648
GH22G017961 0.5 dbSUPER 4.6 +801.7 801706 1.7 ZFHX2 ZNF316 GLIS1 ZIC2 MICAL3 HDHD5-AS1 PIR53397 MIR648
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around HDHD5-AS1 on UCSC Golden Path with GeneCards custom track

Promoters for HDHD5-AS1 Gene
Ensembl Regulatory Elements (ENSRs) TSS Distance (bp) Size (bp) Binding Sites for Transcription Factors within promoters
ENSR00000143504 -284 1801 PKNOX1 FOXA2 CREB3L1 ARNT AGO1 SIN3A ZNF2 YY1 ZNF766 ZNF207

Genomic Location for HDHD5-AS1 Gene

Chromosome:
22
Start:
17,159,384 bp from pter
End:
17,165,445 bp from pter
Size:
6,062 bases
Orientation:
Plus strand

Genomic View for HDHD5-AS1 Gene

Genes around HDHD5-AS1 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
HDHD5-AS1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for HDHD5-AS1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for HDHD5-AS1 Gene

Proteins for HDHD5-AS1 Gene

Post-translational modifications for HDHD5-AS1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for HDHD5-AS1 Gene

Domains & Families for HDHD5-AS1 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for HDHD5-AS1 Gene

Function for HDHD5-AS1 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for HDHD5-AS1 Gene

Localization for HDHD5-AS1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for HDHD5-AS1 Gene

Pathways & Interactions for HDHD5-AS1 Gene

SuperPathways for HDHD5-AS1 Gene

No Data Available

Interacting Proteins for HDHD5-AS1 Gene

Gene Ontology (GO) - Biological Process for HDHD5-AS1 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for HDHD5-AS1 Gene

Transcripts for HDHD5-AS1 Gene

mRNA/cDNA for HDHD5-AS1 Gene

(2) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for HDHD5-AS1 Gene

No ASD Table

Relevant External Links for HDHD5-AS1 Gene

GeneLoc Exon Structure for
HDHD5-AS1
ECgene alternative splicing isoforms for
HDHD5-AS1

Expression for HDHD5-AS1 Gene

No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for HDHD5-AS1 Gene

Orthologs for HDHD5-AS1 Gene

Evolution for HDHD5-AS1 Gene

ENSEMBL:
Gene Tree for HDHD5-AS1 (if available)
TreeFam:
Gene Tree for HDHD5-AS1 (if available)

No data available for Orthologs for HDHD5-AS1 Gene

Paralogs for HDHD5-AS1 Gene

No data available for Paralogs for HDHD5-AS1 Gene

Variants for HDHD5-AS1 Gene

Sequence variations from dbSNP and Humsavar for HDHD5-AS1 Gene

SNP ID Clin Chr 22 pos Sequence Context AA Info Type
rs1000392545 -- 17,158,718(+) CACTT(-/G)GGGGC intron-variant, upstream-variant-2KB, utr-variant-5-prime
rs1001097445 -- 17,162,677(+) TAGAT(G/T)CTCTG intron-variant
rs1001149751 -- 17,162,326(+) ATTAC(A/C)CTTTG intron-variant
rs1001325462 -- 17,157,825(+) ACCAG(A/G)CTACC intron-variant, upstream-variant-2KB
rs1002101704 -- 17,161,229(+) CAACA(C/G)AGTGA intron-variant, upstream-variant-2KB

Structural Variations from Database of Genomic Variants (DGV) for HDHD5-AS1 Gene

Variant ID Type Subtype PubMed ID
esv3647209 CNV gain 21293372
nsv1064641 CNV gain 25217958
nsv1067241 CNV loss 25217958
nsv509805 CNV insertion 20534489
nsv828924 CNV gain 20364138

Relevant External Links for HDHD5-AS1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
HDHD5-AS1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for HDHD5-AS1 Gene

Disorders for HDHD5-AS1 Gene

MalaCards: The human disease database

(1) MalaCards diseases for HDHD5-AS1 Gene - From: GeneCards

Disorder Aliases PubMed IDs
cat eye syndrome
  • ces
- elite association - COSMIC cancer census association via MalaCards

Relevant External Links for HDHD5-AS1

Atlas of Genetics and Cytogenetics in Oncology and Haematology:
HDHD5-AS1
genes like me logo Genes that share disorders with HDHD5-AS1: view

No data available for UniProtKB/Swiss-Prot and Genatlas for HDHD5-AS1 Gene

Publications for HDHD5-AS1 Gene

  1. Analysis of the cat eye syndrome critical region in humans and the region of conserved synteny in mice: a search for candidate genes at or near the human chromosome 22 pericentromere. (PMID: 11381032) Footz T.K. … McDermid H.E. (Genome Res. 2001) 2 3 64

Products for HDHD5-AS1 Gene

Sources for HDHD5-AS1 Gene

Content
Loading form....