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Aliases for HDAC11-AS1 Gene

Subcategory (RNA class) for HDAC11-AS1 Gene

non-coding RNA

Quality Score for this RNA gene is

3

Aliases for HDAC11-AS1 Gene

  • HDAC11 Antisense RNA 1 2 3 5
  • HDAC11 Antisense RNA 1 (Non-Protein Coding) 2

External Ids for HDAC11-AS1 Gene

Previous GeneCards Identifiers for HDAC11-AS1 Gene

  • GC00U933814
  • GC03M013519
  • GC03M013612
  • GC03M013555
  • GC03M013669
  • GC03M013762
  • GC03M013885

Summaries for HDAC11-AS1 Gene

GeneCards Summary for HDAC11-AS1 Gene

HDAC11-AS1 (HDAC11 Antisense RNA 1) is an RNA Gene, and is affiliated with the non-coding RNA class.

No data available for Entrez Gene Summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for HDAC11-AS1 Gene

Genomics for HDAC11-AS1 Gene

Regulatory Elements for HDAC11-AS1 Gene

Enhancers for HDAC11-AS1 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH03F013839 0.2 ENCODE 16.2 -359.8 -359784 1.4 KLF17 ZNF2 RAD21 ZEB1 ZNF335 GLIS2 ZNF366 ZNF391 ZNF263 SP3 ENSG00000223398 HDAC11-AS1 ENSG00000230172 WNT7A C3orf20 GC03M014097
GH03F013880 0.6 ENCODE 16.2 -400.4 -400446 0.2 CTCF ZNF76 KLF17 ZIC2 ZNF2 ZEB1 ZFHX2 GLIS2 ZBTB48 PATZ1 HDAC11-AS1 ENSG00000223398 ENSG00000230172 C3orf20 WNT7A LOC105376957
GH03F014397 0.4 Ensembl 16.2 -918.0 -918048 1.8 ATF1 PKNOX1 ZNF493 FEZF1 ZNF2 ZNF121 GLIS2 KLF7 ZNF263 MIER2 ENSG00000230172 HDAC11-AS1 ENSG00000223398 SH3BP5-AS1 ENSG00000228242 LINC01267 C3orf20 RPS3AP53 RPS24P10 LOC105376959
GH03F014401 1.3 FANTOM5 ENCODE 16.2 -924.2 -924193 5.2 HDGF PKNOX1 ZFP64 ARID4B SIN3A DMAP1 YBX1 ZNF2 ZNF143 FOS SLC6A6 ENSG00000230172 ENSG00000223398 HDAC11-AS1 C3orf20 CCDC174 GC03P014418
GH03F014408 1.8 FANTOM5 Ensembl ENCODE 16.2 -932.8 -932758 8.4 HDGF PKNOX1 ARNT CREB3L1 ARID4B SIN3A FEZF1 FOS KLF13 SP3 ENSG00000230172 ENSG00000223398 HDAC11-AS1 SH3BP5-AS1 CAPN7 ENSG00000228242 C3orf20 SLC6A6 CCDC174 GC03P014418
- Elite enhancer/Elite enhancer-gene association Download Table
Download GeneHancer data dump

Enhancers around HDAC11-AS1 on UCSC Golden Path with GeneCards custom track

Promoters for HDAC11-AS1 Gene
Ensembl Regulatory Elements (ENSRs) TSS Distance (bp) Size (bp) Binding Sites for Transcription Factors within promoters
ENSR00001357912 -47 1801 HDGF ATF1 PKNOX1 MLX SIN3A ARID4B DMAP1 ZNF2 ZNF766 GLIS2

Genomic Location for HDAC11-AS1 Gene

Chromosome:
3
Start:
13,476,982 bp from pter
End:
13,480,053 bp from pter
Size:
3,072 bases
Orientation:
Minus strand

Genomic View for HDAC11-AS1 Gene

Genes around HDAC11-AS1 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
HDAC11-AS1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for HDAC11-AS1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for HDAC11-AS1 Gene

Proteins for HDAC11-AS1 Gene

Post-translational modifications for HDAC11-AS1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for HDAC11-AS1 Gene

Domains & Families for HDAC11-AS1 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for HDAC11-AS1 Gene

Function for HDAC11-AS1 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for HDAC11-AS1 Gene

Localization for HDAC11-AS1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for HDAC11-AS1 Gene

Pathways & Interactions for HDAC11-AS1 Gene

SuperPathways for HDAC11-AS1 Gene

No Data Available

Interacting Proteins for HDAC11-AS1 Gene

Gene Ontology (GO) - Biological Process for HDAC11-AS1 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for HDAC11-AS1 Gene

Transcripts for HDAC11-AS1 Gene

mRNA/cDNA for HDAC11-AS1 Gene

(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for HDAC11-AS1 Gene

No ASD Table

Relevant External Links for HDAC11-AS1 Gene

GeneLoc Exon Structure for
HDAC11-AS1
ECgene alternative splicing isoforms for
HDAC11-AS1

Expression for HDAC11-AS1 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for HDAC11-AS1 Gene

mRNA differential expression in normal tissues according to GTEx for HDAC11-AS1 Gene

This gene is overexpressed in Testis (x34.6).
genes like me logo Genes that share expression patterns with HDAC11-AS1: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners and mRNA Expression by UniProt/SwissProt for HDAC11-AS1 Gene

Orthologs for HDAC11-AS1 Gene

Evolution for HDAC11-AS1 Gene

ENSEMBL:
Gene Tree for HDAC11-AS1 (if available)
TreeFam:
Gene Tree for HDAC11-AS1 (if available)

No data available for Orthologs for HDAC11-AS1 Gene

Paralogs for HDAC11-AS1 Gene

No data available for Paralogs for HDAC11-AS1 Gene

Variants for HDAC11-AS1 Gene

Sequence variations from dbSNP and Humsavar for HDAC11-AS1 Gene

SNP ID Clin Chr 03 pos Sequence Context AA Info Type
rs111401525 -- 13,479,936(+) AAGCC(A/C)CGGCA nc-transcript-variant, upstream-variant-2KB
rs111516502 -- 13,478,338(+) AGGAT(A/C/T)GCTTG intron-variant, upstream-variant-2KB
rs112116058 -- 13,480,737(+) CGCAG(C/T)GGGGT intron-variant, upstream-variant-2KB
rs112269422 -- 13,479,992(+) TTCTA(-/ACC)CCCAG nc-transcript-variant, upstream-variant-2KB
rs11463501 -- 13,478,898(+) TTTTT(-/T)GAGAT intron-variant, upstream-variant-2KB

Relevant External Links for HDAC11-AS1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
HDAC11-AS1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for HDAC11-AS1 Gene

Disorders for HDAC11-AS1 Gene

Relevant External Links for HDAC11-AS1

Atlas of Genetics and Cytogenetics in Oncology and Haematology:
HDAC11-AS1

No disorders were found for HDAC11-AS1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for HDAC11-AS1 Gene

Publications for HDAC11-AS1 Gene

No publications were found for HDAC11-AS1 Gene.

Products for HDAC11-AS1 Gene

Sources for HDAC11-AS1 Gene

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