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Aliases for HDAC11-AS1 Gene

Subcategory (RNA class) for HDAC11-AS1 Gene

non-coding RNA

Quality Score for this RNA gene is

3

Aliases for HDAC11-AS1 Gene

  • HDAC11 Antisense RNA 1 2 3 5
  • HDAC11 Antisense RNA 1 (Non-Protein Coding) 2

External Ids for HDAC11-AS1 Gene

Previous GeneCards Identifiers for HDAC11-AS1 Gene

  • GC00U933814
  • GC03M013519
  • GC03M013612
  • GC03M013555
  • GC03M013669
  • GC03M013762
  • GC03M013885
  • GC03M013999

Summaries for HDAC11-AS1 Gene

GeneCards Summary for HDAC11-AS1 Gene

HDAC11-AS1 (HDAC11 Antisense RNA 1) is an RNA Gene, and is affiliated with the non-coding RNA class.

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for HDAC11-AS1 Gene

Genomics for HDAC11-AS1 Gene

Regulatory Elements for HDAC11-AS1 Gene

Enhancers for HDAC11-AS1 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH03G013001 2 FANTOM5 Ensembl ENCODE dbSUPER 10.1 +466.9 466940 22.6 HDGF PKNOX1 CREB3L1 ARNT WRNIP1 SIN3A YBX1 ZNF766 CBX5 ZNF143 IQSEC1 HDAC11 HDAC11-AS1 CAND2 NUP210 RPL32 GC03P013022 PIR41577 GC03M014199
GH03G013546 1.5 Ensembl ENCODE dbSUPER 11.2 -66.8 -66751 1.5 PKNOX1 ATF1 ARNT TCF12 ELK1 GATA2 FOS JUNB NCOA1 ZNF518A HDAC11-AS1 HDAC11 VN1R20P FBLN2 PIR59377
GH03G013351 1.3 ENCODE dbSUPER 10.6 +126.9 126879 2.4 HDGF PKNOX1 FOXA2 ARNT ARID4B YY1 TCF12 GLIS2 CBX5 FOS NUP210 HDAC11 HDAC11-AS1 IQSEC1
GH03G013598 1.3 Ensembl ENCODE dbSUPER 10.5 -120.3 -120331 3.3 CTCF PKNOX1 FOXA2 NFIB JUN RAD21 ZFHX2 ZBTB48 FOS EGR2 HDAC11-AS1 HDAC11 VN1R20P GC03M014224 GC03P013574
GH03G013542 1.2 Ensembl ENCODE dbSUPER 11.2 -64.2 -64158 2.4 JUN MAX ZIC2 SMC3 FOS CHD2 EGR2 ZNF362 SMARCC1 MAZ HDAC11 HDAC11-AS1 FBLN2 PIR59377
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around HDAC11-AS1 on UCSC Golden Path with GeneCards custom track

Promoters for HDAC11-AS1 Gene
Ensembl Regulatory Elements (ENSRs) TSS Distance (bp) Size (bp) Binding Sites for Transcription Factors within promoters
ENSR00000148803 -47 1401 HDGF PKNOX1 MLX AGO1 SIN3A ARID4B DMAP1 ZNF2 ZBTB7B ZNF766

Genomic Location for HDAC11-AS1 Gene

Chromosome:
3
Start:
13,476,982 bp from pter
End:
13,480,053 bp from pter
Size:
3,072 bases
Orientation:
Minus strand

Genomic View for HDAC11-AS1 Gene

Genes around HDAC11-AS1 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
HDAC11-AS1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for HDAC11-AS1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for HDAC11-AS1 Gene

Proteins for HDAC11-AS1 Gene

Post-translational modifications for HDAC11-AS1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for HDAC11-AS1 Gene

Domains & Families for HDAC11-AS1 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for HDAC11-AS1 Gene

Function for HDAC11-AS1 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for HDAC11-AS1 Gene

Localization for HDAC11-AS1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for HDAC11-AS1 Gene

Pathways & Interactions for HDAC11-AS1 Gene

SuperPathways for HDAC11-AS1 Gene

No Data Available

Interacting Proteins for HDAC11-AS1 Gene

Gene Ontology (GO) - Biological Process for HDAC11-AS1 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for HDAC11-AS1 Gene

Drugs & Compounds for HDAC11-AS1 Gene

No Compound Related Data Available

Transcripts for HDAC11-AS1 Gene

mRNA/cDNA for HDAC11-AS1 Gene

(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for HDAC11-AS1 Gene

No ASD Table

Relevant External Links for HDAC11-AS1 Gene

GeneLoc Exon Structure for
HDAC11-AS1
ECgene alternative splicing isoforms for
HDAC11-AS1

Expression for HDAC11-AS1 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for HDAC11-AS1 Gene

mRNA differential expression in normal tissues according to GTEx for HDAC11-AS1 Gene

This gene is overexpressed in Testis (x34.6).
genes like me logo Genes that share expression patterns with HDAC11-AS1: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for HDAC11-AS1 Gene

Orthologs for HDAC11-AS1 Gene

Evolution for HDAC11-AS1 Gene

ENSEMBL:
Gene Tree for HDAC11-AS1 (if available)
TreeFam:
Gene Tree for HDAC11-AS1 (if available)

No data available for Orthologs for HDAC11-AS1 Gene

Paralogs for HDAC11-AS1 Gene

No data available for Paralogs for HDAC11-AS1 Gene

Variants for HDAC11-AS1 Gene

Sequence variations from dbSNP and Humsavar for HDAC11-AS1 Gene

SNP ID Clin Chr 03 pos Sequence Context AA Info Type
rs1000621539 -- 13,480,371(+) GAGGG(A/C)GGGGG intron-variant, upstream-variant-2KB, utr-variant-5-prime
rs1000850855 -- 13,479,953(+) GCCGG(A/G)AACCT nc-transcript-variant, upstream-variant-2KB
rs1000892704 -- 13,479,840(+) CAGGC(A/G)GCAGG nc-transcript-variant, upstream-variant-2KB
rs1000942880 -- 13,479,610(+) GACAA(C/T)CCCAG intron-variant, upstream-variant-2KB
rs1002087379 -- 13,480,287(+) CCCGC(C/G)CCCCG upstream-variant-2KB, utr-variant-5-prime

Relevant External Links for HDAC11-AS1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
HDAC11-AS1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for HDAC11-AS1 Gene

Disorders for HDAC11-AS1 Gene

Relevant External Links for HDAC11-AS1

Atlas of Genetics and Cytogenetics in Oncology and Haematology:
HDAC11-AS1

No disorders were found for HDAC11-AS1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for HDAC11-AS1 Gene

Publications for HDAC11-AS1 Gene

No publications were found for HDAC11-AS1 Gene.

Products for HDAC11-AS1 Gene

Sources for HDAC11-AS1 Gene

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