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Aliases for HCRT Gene

Aliases for HCRT Gene

  • Hypocretin (Orexin) Neuropeptide Precursor 2 3 5
  • Prepro-Orexin 2 3
  • PPOX 3 4
  • OX 3 4
  • Hypocretin 4
  • NRCLP1 3
  • PPORX 4
  • Hcrt 4

External Ids for HCRT Gene

Previous GeneCards Identifiers for HCRT Gene

  • GC17M039901
  • GC17M042492
  • GC17M040244
  • GC17M040709
  • GC17M037589
  • GC17M040337
  • GC17M036101

Summaries for HCRT Gene

Entrez Gene Summary for HCRT Gene

  • This gene encodes a hypothalamic neuropeptide precursor protein that gives rise to two mature neuropeptides, orexin A and orexin B, by proteolytic processing. Orexin A and orexin B, which bind to orphan G-protein coupled receptors HCRTR1 and HCRTR2, function in the regulation of sleep and arousal. This neuropeptide arrangement may also play a role in feeding behavior, metabolism, and homeostasis. [provided by RefSeq, Jan 2010]

GeneCards Summary for HCRT Gene

HCRT (Hypocretin (Orexin) Neuropeptide Precursor) is a Protein Coding gene. Diseases associated with HCRT include narcolepsy 1 and narcolepsy. Among its related pathways are Signaling by GPCR and Metabolism. GO annotations related to this gene include type 1 hypocretin receptor binding and type 2 hypocretin receptor binding.

UniProtKB/Swiss-Prot for HCRT Gene

  • Neuropeptides that play a significant role in the regulation of food intake and sleep-wakefulness, possibly by coordinating the complex behavioral and physiologic responses of these complementary homeostatic functions. A broader role in the homeostatic regulation of energy metabolism, autonomic function, hormonal balance and the regulation of body fluids, is also suggested. Orexin-A binds to both OX1R and OX2R with a high affinity, whereas orexin-B binds only to OX2R with a similar high affinity.

No data available for Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for HCRT Gene

Genomics for HCRT Gene

Regulatory Elements for HCRT Gene

Promoters for HCRT Gene
Ensembl Regulatory Elements (ENSRs) TSS Distance (bp) Size (bp) Binding Sites for Transcription Factors within promoters

ENSRs around HCRT on UCSC Golden Path with GeneCards custom track

Genomic Location for HCRT Gene

Chromosome:
17
Start:
42,184,060 bp from pter
End:
42,185,452 bp from pter
Size:
1,393 bases
Orientation:
Minus strand

Genomic View for HCRT Gene

Genes around HCRT on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
HCRT Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for HCRT Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for HCRT Gene

Proteins for HCRT Gene

  • Protein details for HCRT Gene (UniProtKB/Swiss-Prot)

    Protein Symbol:
    O43612-OREX_HUMAN
    Recommended name:
    Orexin
    Protein Accession:
    O43612

    Protein attributes for HCRT Gene

    Size:
    131 amino acids
    Molecular mass:
    13363 Da
    Quaternary structure:
    No Data Available

    Three dimensional structures from OCA and Proteopedia for HCRT Gene

neXtProt entry for HCRT Gene

Proteomics data for HCRT Gene at MOPED

Post-translational modifications for HCRT Gene

  • Specific enzymatic cleavages at paired basic residues yield the different active peptides.

Other Protein References for HCRT Gene

ENSEMBL proteins:
REFSEQ proteins:

Antibody Products

  • R&D Systems Antibodies for HCRT (Orexin A/Hypocretin-1)
  • R&D Systems Antibodies for HCRT (Orexin B/Hypocretin-2)

No data available for DME Specific Peptides for HCRT Gene

Domains & Families for HCRT Gene

Gene Families for HCRT Gene

Protein Domains for HCRT Gene

InterPro:
Blocks:
ProtoNet:

Suggested Antigen Peptide Sequences for HCRT Gene

GenScript: Design optimal peptide antigens:

Graphical View of Domain Structure for InterPro Entry

O43612

UniProtKB/Swiss-Prot:

OREX_HUMAN :
  • Belongs to the orexin family.
Family:
  • Belongs to the orexin family.
genes like me logo Genes that share domains with HCRT: view

Function for HCRT Gene

Molecular function for HCRT Gene

GENATLAS Biochemistry:
hypocretin neuropeptide precursor of isoforms A and B,expressed in lateral hypothalamus and adjacent areas,potential mediator in the central feedback mechanism,that regulates feeding behavior,homolog to secretin,susceptibility gene for narcolepsy
UniProtKB/Swiss-Prot Function:
Neuropeptides that play a significant role in the regulation of food intake and sleep-wakefulness, possibly by coordinating the complex behavioral and physiologic responses of these complementary homeostatic functions. A broader role in the homeostatic regulation of energy metabolism, autonomic function, hormonal balance and the regulation of body fluids, is also suggested. Orexin-A binds to both OX1R and OX2R with a high affinity, whereas orexin-B binds only to OX2R with a similar high affinity.
genes like me logo Genes that share phenotypes with HCRT: view

Human Phenotype Ontology for HCRT Gene

HPO Id HPO Name Alternative Ids Definition Synonyms

Animal Models for HCRT Gene

MGI Knock Outs for HCRT:

Animal Model Products

miRNA for HCRT Gene

miRTarBase miRNAs that target HCRT

Inhibitory RNA Products

In Situ Assay Products

Flow Cytometry Products

No data available for Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Transcription Factor Targets and HOMER Transcription for HCRT Gene

Localization for HCRT Gene

Subcellular locations from UniProtKB/Swiss-Prot for HCRT Gene

Rough endoplasmic reticulum. Cytoplasmic vesicle. Cell junction, synapse. Note=Associated with perikaryal rough endoplasmic reticulum as well as cytoplasmic large granular vesicles at synapses. {ECO:0000250}.

Subcellular locations from

COMPARTMENTS
Jensen Localization Image for HCRT Gene COMPARTMENTS Subcellular localization image for HCRT gene
Compartment Confidence
extracellular 5
endoplasmic reticulum 3
nucleus 3
cytosol 2
plasma membrane 1

Gene Ontology (GO) - Cellular Components for HCRT Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0005737 cytoplasm IEA --
GO:0005791 rough endoplasmic reticulum IEA --
genes like me logo Genes that share ontologies with HCRT: view

Pathways & Interactions for HCRT Gene

genes like me logo Genes that share pathways with HCRT: view

SIGNOR curated interactions for HCRT Gene

Activates:

Gene Ontology (GO) - Biological Process for HCRT Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0007204 positive regulation of cytosolic calcium ion concentration IEA --
GO:0007268 synaptic transmission TAS 9419374
GO:0007631 feeding behavior IEA --
GO:0051971 positive regulation of transmission of nerve impulse IEA --
GO:0060079 excitatory postsynaptic potential IEA --
genes like me logo Genes that share ontologies with HCRT: view

Drugs & Compounds for HCRT Gene

(42) Drugs for HCRT Gene - From: Novoseek, DrugBank, and HMDB

Name Status Disease Links Group Role Mechanism of Action Clinical Trials
Pyroglutamic acid Experimental Pharma Target 0

(20) Additional Compounds for HCRT Gene - From: Novoseek

Name Synonyms Role CAS Number PubChem IDs PubMed IDs
genes like me logo Genes that share compounds with HCRT: view

Transcripts for HCRT Gene

mRNA/cDNA for HCRT Gene

(1) REFSEQ mRNAs :
(1) Additional mRNA sequences :
(6) Selected AceView cDNA sequences:
(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Unigene Clusters for HCRT Gene

Hypocretin (orexin) neuropeptide precursor:
Representative Sequences:

Inhibitory RNA Products

Flow Cytometry Products

Alternative Splicing Database (ASD) splice patterns (SP) for HCRT Gene

No ASD Table

Relevant External Links for HCRT Gene

GeneLoc Exon Structure for
HCRT
ECgene alternative splicing isoforms for
HCRT

Expression for HCRT Gene

mRNA expression in normal human tissues for HCRT Gene

mRNA expression in embryonic tissues and stem cells from LifeMap Discovery

mRNA differential expression in normal tissues according to GTEx for HCRT Gene

This gene is overexpressed in Brain - Hypothalamus (x51.1).

SOURCE GeneReport for Unigene cluster for HCRT Gene Hs.158348

mRNA Expression by UniProt/SwissProt for HCRT Gene

O43612-OREX_HUMAN
Tissue specificity: Abundantly expressed in subthalamic nucleus but undetectable in other brain regions tested (hypothalamus was not tested) and in heart, placenta, lung, liver, skeletal muscle, kidney and pancreas.
genes like me logo Genes that share expression patterns with HCRT: view

Primer Products

In Situ Assay Products

No data available for Protein differential expression in normal tissues , Protein expression and Protein tissue co-expression partners for HCRT Gene

Orthologs for HCRT Gene

This gene was present in the common ancestor of chordates.

Orthologs for HCRT Gene

Organism Taxonomy Gene Similarity Type Details
cow
(Bos Taurus)
Mammalia HCRT 35
  • 88.04 (n)
  • 90.08 (a)
BORX 36
  • 90 (a)
OneToOne
dog
(Canis familiaris)
Mammalia HCRT 35
  • 87.18 (n)
  • 89.23 (a)
HCRT 36
  • 90 (a)
OneToOne
mouse
(Mus musculus)
Mammalia Hcrt 35
  • 80 (n)
  • 80 (a)
Hcrt 16
Hcrt 36
  • 82 (a)
OneToOne
chimpanzee
(Pan troglodytes)
Mammalia HCRT 35
  • 99.49 (n)
  • 100 (a)
HCRT 36
  • 100 (a)
OneToOne
rat
(Rattus norvegicus)
Mammalia Hcrt 35
  • 83.92 (n)
  • 88.6 (a)
oppossum
(Monodelphis domestica)
Mammalia HCRT 36
  • 67 (a)
OneToOne
chicken
(Gallus gallus)
Aves HCRT 36
  • 48 (a)
OneToOne
lizard
(Anolis carolinensis)
Reptilia HCRT 36
  • 43 (a)
OneToOne
zebrafish
(Danio rerio)
Actinopterygii hcrt 36
  • 34 (a)
OneToOne
Species with no ortholog for HCRT:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • fruit fly (Drosophila melanogaster)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • platypus (Ornithorhynchus anatinus)
  • rainbow trout (Oncorhynchus mykiss)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea squirt (Ciona intestinalis)
  • sea squirt (Ciona savignyi)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • tropical clawed frog (Silurana tropicalis)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)

Evolution for HCRT Gene

ENSEMBL:
Gene Tree for HCRT (if available)
TreeFam:
Gene Tree for HCRT (if available)

Paralogs for HCRT Gene

No data available for Paralogs for HCRT Gene

Variants for HCRT Gene

Sequence variations from dbSNP and Humsavar for HCRT Gene

SNP ID Clin Chr 17 pos Sequence Context AA Info Type
VAR_011633 Narcolepsy 1 (NRCLP1)
rs1453402 -- 42,185,776(-) AATTA(A/G)CAGCT upstream-variant-2KB
rs748442 -- 42,185,838(+) GGAGC(A/G)GCCAG upstream-variant-2KB
rs748443 -- 42,185,933(+) CCTTA(C/G)CTGCC upstream-variant-2KB
rs748444 -- 42,186,189(+) aacct(A/C)ctgaa upstream-variant-2KB

Structural Variations from Database of Genomic Variants (DGV) for HCRT Gene

Variant ID Type Subtype PubMed ID
dgv3169n71 CNV Loss 21882294
nsv908244 CNV Loss 21882294

Variation tolerance for HCRT Gene

Gene Damage Index Score: 0.73; 15.53% of all genes are more intolerant (likely to be disease-causing)

Relevant External Links for HCRT Gene

HapMap Linkage Disequilibrium report
HCRT
Human Gene Mutation Database (HGMD)
HCRT

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot for HCRT Gene

Disorders for HCRT Gene

MalaCards: The human disease database

(34) MalaCards diseases for HCRT Gene - From: OMIM, ClinVar, GeneTests, Orphanet, Swiss-Prot, DISEASES, Novoseek, and GeneCards

Disorder Aliases PubMed IDs
narcolepsy 1
  • narcolepsy-cataplexy syndrome
narcolepsy
  • narcolepsy, without cataplexy
sleep disorder
  • non-organic sleep disorder
idiopathic hypersomnia
  • idiopathic hypersomnolence
recurrent hypersomnia
  • primary recurrent hypersomnia
- elite association - COSMIC cancer census association via MalaCards
Search HCRT in MalaCards View complete list of genes associated with diseases

UniProtKB/Swiss-Prot

OREX_HUMAN
  • Narcolepsy 1 (NRCLP1) [MIM:161400]: Neurological disabling sleep disorder, characterized by excessive daytime sleepiness, sleep fragmentation, symptoms of abnormal rapid-eye-movement (REM) sleep, cataplexy, hypnagogic hallucinations, and sleep paralysis. Cataplexy is a sudden loss of muscle tone triggered by emotions, which is the most valuable clinical feature used to diagnose narcolepsy. Human narcolepsy is primarily a sporadically occurring disorder but familial clustering has been observed. {ECO:0000269 PubMed:10973318}. Note=The disease is caused by mutations affecting the gene represented in this entry. Human narcolepsy is associated with a deficient orexin system. Orexins are absent and/or greatly diminished in the brain and cerebrospinal fluid (CSF) of most narcoleptic patients.

Relevant External Links for HCRT

Genetic Association Database (GAD)
HCRT
Human Genome Epidemiology (HuGE) Navigator
HCRT
Atlas of Genetics and Cytogenetics in Oncology and Haematology:
HCRT
genes like me logo Genes that share disorders with HCRT: view

No data available for Genatlas for HCRT Gene

Publications for HCRT Gene

  1. Orexins and orexin receptors: a family of hypothalamic neuropeptides and G protein-coupled receptors that regulate feeding behavior. (PMID: 9491897) Sakurai T. … Yanagisawa M. (Cell 1998) 2 3 4 67
  2. Rapid eye movement sleep behaviour disorder in patients with narcolepsy is associated with hypocretin-1 deficiency. (PMID: 20129934) Knudsen S. … Jennum P.J. (Brain 2010) 3 23
  3. IGFBP3 colocalizes with and regulates hypocretin (orexin). (PMID: 19158946) Honda M. … Mignot E. (PLoS ONE 2009) 3 23
  4. CSF orexin-A/hypocretin-1 concentrations in patients with intracerebral hemorrhage (ICH). (PMID: 17868933) Dohi K. … Nishino S. (Regul. Pept. 2008) 3 23
  5. Hypocretin and melanin-concentrating hormone in patients with Huntington disease. (PMID: 18498421) Aziz A. … Roos R. (Brain Pathol. 2008) 3 23

Products for HCRT Gene

Sources for HCRT Gene

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