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Aliases & Descriptions for HCK
(According to
1HGNC,
2Entrez Gene,
3UniProtKB/Swiss-Prot,
4UniProtKB/TrEMBL, 5OMIM, 6GeneLoc
, and/or 7Ensembl,
8miRBase) About This Section
|
| Aliases |
|---|
| EC 2.7.10.2 3 | | JTK9 1, 2 | | p59-HCK/p60-HCK 3 |
| | | Descriptions |
|---|
| hemopoietic cell kinase 2, 3 | | tyrosine protein kinase HCK 2 |
|
| | Search outside databases for aliases for HCK genePrevious GC identifers: GC20P030428 GC20P031338 GC20P031385 |
Summaries for HCK(According to Entrez Gene,
Wikipedia's
Gene Wiki,
UniProtKB/Swiss-Prot,
and/or
UniProtKB/TrEMBL)
About This Section
| EntrezGene summary for HCK: The protein encoded by this gene is a protein-tyrosine kinase that is predominantly expressed in hemopoietic cell types. The encoded protein may help couple the Fc receptor to the activation of the respiratory burst. In addition, it may play a role in neutrophil migration and in the degranulation of neutrophils. Alternate translation initiation site usage, including a non-AUG (CUG) codon, results in the production of two different isoforms, that have different subcellular localization. [provided by RefSeq] UniProtKB/Swiss-Prot: HCK_HUMAN, P08631Function: May serve as part of a signaling pathway coupling the Fc receptor to the activation of the respiratory burst. May also contribute to neutrophil migration and may regulate the degranulation process of neutrophilsGene Wiki entry for HCK |
Genomic Location for HCK
(According to
GeneLoc and/or
HGNC, and/or
Entrez Gene (NCBI build 36),
and/or miRBase,
Genomic Views according to
UCSC and
Ensembl,
Transcription factor binding sites according to
SABiosciences) About This Section
| Genomic View: UCSC Golden Path with GeneCards custom track
Transcription factor binding sites upstream to the HCK gene 
Entrez Gene cytogenetic band: 20q11-q12 Ensembl cytogenetic band: 20q11.21 HGNC cytogenetic band: 20q11-q12HCK Gene in genomic location: bands according to Ensembl, locations according to
(and/or Entrez Gene and/or Ensembl if different)
 GeneLoc gene densities for chromosome 20 GeneLoc Exon Structure GeneLoc location for GC20P030103:
(about GC identifiers)
Start:
|
30,103,706 bp from pter |
End:
|
30,153,320 bp from pter |
Size:
|
49,615 bases |
Orientation:
|
plus strand |
RefSeq DNA sequence:- NC_000020.9 NT_028392.5
| Proteins for HCK
(According to
1UniProtKB,
and/or Ensembl,
Phosphorylation sites according to 2Phosphosite,
RefSeq according to NCBI,
PDB rendering according to OCA and/or Proteopedia,
Recombinant Proteins
from Invitrogen,
Millipore,
Sigma-Aldrich,
R&D Systems,
Enzo Life Sciences,
Abnova,
OriGene and/or,
Abcam,
Biochemical Assays by
Invitrogen,
Millipore,
R&D Systems,
Cell Signaling Technology, and/or
Enzo Life Sciences,
Ontologies according to Gene
Ontology Consortium 01 Apr 2009 and
Entrez Gene,
Antibodies by Invitrogen,
Millipore,
Sigma-Aldrich,
R&D Systems,
Cell Signaling Technology,
Abcam,
Abnova, and/or
Novus Biologicals)
About This Section
| UniProtKB/Swiss-Prot: HCK_HUMAN, P08631 (See
protein sequence)Recommended Name: Tyrosine-protein kinase HCK Size: 526 amino acids; 59600 Da
Subunit: May interact (via SH3 domain) with HIV-1 Nef and Vif. This interaction would stimulates its tyrosine-kinase activity. Interacts (via SH3 domain) with HEV ORF3 protein
Subcellular location: Isoform p59-HCK: Membrane; Lipid-anchor
Subcellular location: Isoform p60-HCK: Membrane; Lipid-anchor. Cytoplasm
Sequence caution: Sequence=AAA52643.1; Type=Frameshift; Positions=20;
PDB structures from and Proteopedia :1AD5 (3D)
 1BU1 (3D)
 1QCF (3D)
 2C0I (3D)
 2C0O (3D)
 2C0T (3D)
 2HCK (3D)
 2HK5 (3D)
 2OI3 (3D)
 2OJ2 (3D)
 3HCK (3D)
 4HCK (3D)
 5HCK (3D)
 
Secondary accessions: Q29RX1 Q2VPE2 Q504R5 Q5T7K1 Q5T7K2 Q96CC0 Q9H5Y5 Q9NUA4 Q9UMJ5Alternative initiation: 2 isoforms: P08631-1 P08631-2 Post-translational modifications:
Isoform p59-HCK contains a N-myristoyl glycine at position 3 (By similarity). Isoform p59-HCK contains a S-palmitoyl cysteine at position 3 (By similarity)1
View phosphorylation sites using PhosphoSite2
REFSEQ proteins: NP_002101.2
ENSEMBL proteins: ENSP00000365012 ENSP00000262651 ENSP00000365022
Human Recombinant Proteins Browse Origene for full length recombinant human proteins expressed in human HEK293 cells 
2 Gene Ontology (GO) cellular component terms (links to tree view): About this table
Antibodies for HCK: Assays for HCK: | Protein
Domains/ Families for HCK(According to InterPro, ProtoNet,
UniProtKB, and/or BLOCKS,
Sets of similar genes according to GeneDecks)
About This Section
| - Graphical View of Domain Structure for InterPro Entry P08631
ProtoNet protein and cluster: P08631 3 Blocks protein families: IPB000980 SH2 domain signature IPB001452 SH3 domain signature IPB008266 Tyrosine protein kinase
UniProtKB/Swiss-Prot: HCK_HUMAN, P08631Domain: The SH3 domain mediates binding to HIV-1 NefSimilarity: Belongs to the protein kinase superfamily. Tyr protein kinase family. SRC subfamilySimilarity: Contains 1 protein kinase domainSimilarity: Contains 1 SH2 domainSimilarity: Contains 1 SH3 domain | Gene Function for HCK
(According to MGI Jun 06 2009, UniProtKB,
IUBMB,and/or Genatlas,
shRNA from
OriGene,
Sigma-Aldrich, RNAi from
Sigma-Aldrich,
RNAi Products,
Clones, and
Q-PCR Products
from Invitrogen,
Millipore,
OriGene, and/or
Abnova,
siRNAs from
Applied Biosystems,
SYBR primers from OriGene,
Cell-based Assays from Millipore,
Ontologies according to Gene Ontology Consortium 01 Apr 2009 via
Entrez Gene.)
About This Section
| Inhib. RNA: |  | Invitrogen RNAi Products for gene knock-down (HCK) | |  | Millipore RNAi Products for the Analysis of HCK Gene knock-down | |  | Abnova Chimera RNAi Products for Gene knock-down (HCK) |               OriGene 29mer shRNA kit in GFP-retroviral vector: NM_002110
Applied Biosystems Silencer® siRNAs for HCK
Sigma-Aldrich siRNA and siRNA Panels for HCK  Sigma-Aldrich shRNA Panels and shRNA for HCK  Explore Sigma-Aldrich super-pooled esiRNAs 
              OriGene GFP tagged cDNA clone in CMV expression vector: NM_002110                                  Myc/DDK tagged cDNA clone in CMV expression vector: NM_002110                                  untagged cDNA clones in CMV expression vector (see all 3): NM_002110 
Primers: Browse
Quantitative PCR Central at Invitrogen for Q-PCR LUX™ Primers               OriGene genome-wide validated SYBR primer pairs: NM_002110
UniProtKB/Swiss-Prot: HCK_HUMAN, P08631Function: May serve as part of a signaling pathway coupling the Fc receptor to the activation of the respiratory burst. May also contribute to neutrophil migration and may regulate the degranulation process of neutrophilsCatalytic activity: ATP + a [protein]-L-tyrosine = ADP + a [protein]-L-tyrosine phosphateEnzyme Number (IUBMB): EC 2.7.10.2 Genatlas biochemistry entry for HCK:hemopoietic cell kinase11 MGI mutant phenotypes (inferred from 2 alleles ) (MGI details for Hck):
5 Gene Ontology (GO) molecular function terms (links to tree view): About this table | Pathways & Interactions for HCK
(Pathways according to Invitrogen
(maps by GeneGo),
Millipore,
Cell Signaling Technology,
Sigma-Aldrich,
KEGG
and/or UniProtKB,
Sets of similar genes according to GeneDecks,
Proteins Network according to
SABiosciences,
Interactions according to 1UniProtKB,
2MINT, and/or
3STRING,
with links to IntAct and
Ensembl,
Ontologies according to Gene Ontology Consortium 01 Apr 2009 via
Entrez Gene.)
About This Section
|
3 Sigma-Aldrich "Your Favorite Gene" Pathways for HCK (Your Favorite Gene powered by Ingenuity) 
Gene Network CentralTM Interacting Genes and Proteins Network for HCK 
5/128 Interacting proteins for HCK (ENSP000002626513 P086311, 2) via UniProtKB, MINT, and/or STRING (see all 128
)About this table
3 Gene Ontology (GO) biological process terms (links to tree view): About this table
|
Drugs & Compounds for HCK(Chemical Compounds according to UniProtKB, Enzo Life Sciences,
Sigma-Aldrich, Tocris Bioscience, and/or
Novoseek and Drugs according to
Enzo Life Sciences and/or
PharmGKB)
About This Section
|  |
Enzo Life Sciences drugs & compounds for HCK |
Compounds for HCK available from Tocris Bioscience 10/17 Novoseek chemical compound relationships for HCK gene (see all 17
)
About this table
|
Transcripts for HCK(GenBank/EMBL/DDBJ Accessions according to
Unigene
(Build 219 Homo sapiens; Jun 2 2009) or GenBank, RefSeq according to Entrez Gene,
DOTS (version 10), and/or
AceView,
non coding RNAs according to
RNAdb,
ESTs according to GeneTide,
exon structure from GeneLoc,
alternative splicing isoforms according to ASD and/or
ECgene,
RNAi Products from Invitrogen,
Millipore, and/or
Abnova,
siRNAs from Applied Biosystems,
Sigma-Aldrich,
shRNA from
Sigma-Aldrich,
OriGene,
Tagged/untagged cDNA clones from
OriGene, Expression Assays from Applied Biosystems) About This Section
| Inhib. RNA: |  | Invitrogen RNAi Products for gene knock-down (HCK) | |  | Millipore RNAi Products for the Analysis of HCK Gene knock-down | |  | Abnova Chimera RNAi Products for Gene knock-down (HCK) |               OriGene 29mer shRNA kit in GFP-retroviral vector: NM_002110
Sigma-Aldrich siRNA and siRNA Panels for HCK  Sigma-Aldrich shRNA Panels and shRNA for HCK  Explore Sigma-Aldrich super-pooled esiRNAs 
Applied Biosystems Silencer® siRNAs: NM_002110 REFSEQ mRNAs for HCK gene: NM_002110.2
Applied Biosystems TaqMan ® Gene Expression Assays: NM_002110               OriGene GFP tagged cDNA clone in CMV expression vector: NM_002110                                  Myc/DDK tagged cDNA clone in CMV expression vector: NM_002110                                  untagged cDNA clones in CMV expression vector (see all 3): NM_002110  Additional cDNA sequence: AK026432.1 AK225819.1 AK289896.1 AK290928.1 AK298726.1 AK314335.1 BC014435.1 BC073748.1 BC094847.1 BC108930.1 BC108931.1 BC113854.1 BC114463.1 CR594271.1 6 DOTS entries: DT.311472 DT.100659852 DT.120799457 DT.97780462 DT.444878 DT.95165612 24/82 AceView cDNA sequences (see all 82
):BI905929 AW452008 BQ062291 BC073748 NM_002110 N59457 AA632353 AI912730 BE670668 CD671491 AK026432 BQ706242 CD672015 CD672014 CD671492 AL543079 BX093144 BE552057 CR594271 AW450367 AW473073 BF222829 BP372970 BC014435
highest scoring ESTs for HCK:AA149096 AA149097 AA632353 AA676644 AI193645 AI220607 AI351472 AI458570 AI572095 AI656881 Unigene Cluster for HCK: Hemopoietic cell kinase Hs.655210 [show with all ESTs]Unigene Representative Sequence: AK290928
GeneLoc Exon Structure
4 Alternative Splicing Database (ASD) splice patterns (SP) for HCK
| ExUns: | 1a | · | 1b | · | 1c | ^ | 2 | ^ | 3 | ^ | 4 | ^ | 5 | ^ | 6a | · | 6b | ^ | 7 | ^ | 8 | ^ | 9a | · | 9b | ^ | 10 | ^ | 11 | ^ | 12 | ^ | 13 | ^ | 14 | ^ | 15 | |
| SP1: | |   | |   | |   | - |   | - |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |
| SP2: | |   | |   | |   | - |   | - |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |
| SP3: | |   | |   | |   | - |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |
| SP4: | |   | |   | |   | |   | - |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   |
About this scheme
ECgene alternative splicing isoforms for HCK
3 Ensembl transcripts including schematic representations: ENST00000375852
ENST00000262651
ENST00000375862
|
Expression for HCK
(Experimental results according to
1GeneNote
and GNF BioGPS,
probe sets-to-genes annotations according to
2GeneAnnot ,
3GeneTide ,
Sets of similar genes according to GeneDecks,
Electronic Northern calculations according to data from
UniGene (Build 219 Homo sapiens),
SAGE tags according to
CGAP,
plus additional links to
SOURCE, and/or
GNF
BioGPS, and/or
EXPOLDB, and/or
UniProtKB,
Expression Assays from
Applied Biosystems
)
About This Section
| HCK expression in normal and diseased human tissues
Applied Biosystems TaqMan ® Gene Expression Assays for HCK
1 / 2 / 3 4 probe-sets matching HCK gene Data from
(Publications) and GNF BioGPS About these images About these images
CGAP SAGE TAG: ATAGGGAGGA
SOURCE GeneReport for Unigene cluster: Hs.655210
Expression variation in blood from EXPOLDB for HCK UniProtKB/Swiss-Prot: HCK_HUMAN, P08631Tissue specificity: Expressed predominantly in cells of the myeloid and B-lymphoid lineages |
Orthologs for HCK
(Orthologs according to
1,2HomoloGene (2older version, for species not in 1newer version),
3euGenes,
4SGD
and/or
5MGI Jun 06 2009,
with possible further links to
Flybase
and/or
WormBase,
Gene Trees according to Ensembl)
About This Section
|
Orthologs for HCK gene from 5/8 species (see all 8
)
About this table Species with no ortholog for HCK
ENSEMBL Gene Tree for HCK | Paralogs for HCK(Paralogs according to 1HomoloGene and 2Ensembl, Pseudogenes according to 3Pseudogene.org) About This Section
| Paralogs for HCK gene
- LCK2 BLK2 LYN2
|
SNPs/Variants for HCK(According to the
1NCBI SNP Database,
2Ensembl,
3PupaSUITE, and
UniProtKB,
Linkage Disequilibrium by HapMap,
Genotyping Reagents from
Applied Biosystems)
About This Section
|
HapMap Linkage Disequilibrium images for HCK (up to first 250kb)
|
Disorders & Mutations for HCK
(in which this Gene is Involved, According to
OMIM, UniProtKB,
Novoseek, PharmGKB,
Genatlas, GeneTests,
Blood group antigen gene mutations by BGMUT,
HGMD, GAD,
HuGE Navigator,
BCGD,
and/or TGDB.)
About This Section
|
OMIM: 142370
9 Novoseek disease relationships for HCK gene
| Disease |
Score |
Articles |
PubMed IDs for Articles with Shared Sentences (# sentences) |
| myeloid leukemia chronic |
56.02 |
3 |
17344919 (1), 16546576 (1), 9390404 (1) |
| immunodeficiency |
37.36 |
13 |
10473622 (2), 9621101 (2), 9218412 (1), 15613341 (1) (see all 7) |
| myeloid leukemia |
26.62 |
1 |
10849448 (1) |
| lymphoblastic leukemia acute |
16.80 |
7 |
10720701 (2), 10658677 (2), 17344919 (1) |
| aids |
14.48 |
4 |
17893228 (1), 15595833 (1), 16352531 (1), 17920628 (1) |
| leukemia |
12.19 |
3 |
17344919 (2), 18538446 (1) |
| tumors |
3.77 |
3 |
17344919 (1), 19211505 (1), 12237848 (1) |
| cancer |
2.24 |
1 |
7690925 (1) |
| necrosis |
0.00 |
1 |
12237848 (1) |
About this table
Human Gene Mutation Database: HCK Human Genome Epidemiology Navigator: HCK (1 document) Tumor Gene Database: HCK
|
Medical News for HCK(Possibly Related Articles in
Doctor's Guide)
About This Section
| -- |
Publications for HCK (in
PubMed.
Associations of this gene to articles via
1Novoseek,
2HGNC,
3Entrez Gene,
4UniProtKB/Swiss-Prot,
5UniProtKB/TrEMBL,
6GAD, and/or
7PharmGKB)
About This Section
| 10/259 PubMed articles for HCK gene (see all 259
):- Identification of a human gene (HCK) that encodes a protein-tyrosine kinase and is expressed in hemopoietic cells. (PubMed id 3496523)2, 3, 4 Quintrell N.... Rowley J.D. (1987)
- The tyrosine kinase Hck is an inhibitor of HIV-1 replication counteracted by the viral vif protein. (PubMed id 11278465)1, 3, 4 Hassaine G.... Decroly E. (2001)
- SH3-mediated Hck tyrosine kinase activation and fibroblast transformation by the Nef protein of HIV-1. (PubMed id 9218412)1, 3, 4 Briggs S.D.... Smithgall T.E. (1997)
- Two isoforms of murine hck, generated by utilization of alternative translational initiation codons, exhibit different patterns of subcellular localization. (PubMed id 1875927)1, 3, 4 Lock P.... Dunn A.R. (1991)
- Solution structure of the human Hck SH3 domain and identification of its ligand binding site. (PubMed id 9571048)1, 3, 4 Horita D.A.... Byrd R.A. (1998)
- The genomic locus of the human hemopoietic-specific cell protein tyrosine kinase (PTK)-encoding gene (HCK) confirms conservation of exon-intron structure among human PTKs of the src family. (PubMed id 1572549)1, 3, 4 Hradetzky D.... Ruesamen-Waigmann H. (1992)
- RT loop flexibility enhances the specificity of Src family SH3 domains for HIV-1 Nef. (PubMed id 9778343)1, 3, 4 Arold S....Ladbury J.E. (1998)
- Sequential assignment and secondary structure determination for the Src homology 2 domain of hematopoietic cellular kinase. (PubMed id 9109402)1, 3, 4 Zhang W.... Gmeiner W.H. (1997)
- Global, in vivo, and site-specific phosphorylation dynamics in signaling networks. (PubMed id 17081983)3, 4 Olsen J.V....Mann M. (2006)
- Complete sequencing and characterization of 21,243 full-length human cDNAs. (PubMed id 14702039)3, 4 Ota T....Sugano S. (2004)
|
Search for HCK
(in PubMed,
OMIM, and NCBI Bookshelf) About This Section
|
|
Genome Databases showing HCK
(According to
Entrez Gene,
HGNC,
AceView,
euGenes,
Ensembl,
miRBase,
ECgene,
and/or
H-InvDB)
About This Section
|
| Other Databases showing HCK
(According to HUGE)
About This Section
| -- |
Specialized Databases showing HCK(According to ATLAS, HORDE, IMGT, MTDB, LEIDEN, UniProtKB/Swiss-Prot, and/or UniProtKB/TrEMBL, Wikipedia and/or GeneReviews via UniProtKB/Swiss-Prot) About This Section
|
| About This Section
| --
| Services for HCK(Reagents available from Applied Biosystems, Antibodies and assays by Cell
Signaling Technology, Abcam, Novus Biologicals, Sigma-Aldrich, R&D Systems, Millipore, Abnova, and/or Invitrogen, Clones available from OriGene,and/or Invitrogen, Drugs and/or compounds by Sigma-Aldrich, Enzo Life Sciences, and/or Tocris Bioscience) About This Section
| 
 Products for HCK:

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 | | | | |
|
 |  |  |
| Antibodies & Assays for HCK  |
| | Recombinant Proteins (Hck) | | Antibodies (Hck) |
| | | Tocris compounds for HCK |
|
 |
 | | | Antibodies for HCK |
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GeneCards Homepage - Last full update: 2 Jul 2009
Incremental update: 13 Oct 2009
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