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Aliases for HCG9P5 Gene

Aliases for HCG9P5 Gene

  • HLA Complex Group 9 Pseudogene 5 2 3
  • HCGIX-5 Pseudogene 3
  • DJ377H14.6 3
  • HCGIX-5 3

External Ids for HCG9P5 Gene

Previous GeneCards Identifiers for HCG9P5 Gene

  • GC06P029823
  • GC06P029824
  • GC06M029824
  • GC06P029717
  • GC06P029519
  • GC06Pj29711
  • GC06P029804
  • GC06P030025
  • GC06P030177
  • GC06P030052
  • GC06P030093
  • GC06P030338
  • GC06P030483
  • GC06P030685
  • GC06P030847

Summaries for HCG9P5 Gene

GeneCards Summary for HCG9P5 Gene

HCG9P5 (HLA Complex Group 9 Pseudogene 5) is a Pseudogene.

Additional gene information for HCG9P5 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for HCG9P5 Gene

Genomics for HCG9P5 Gene

Regulatory Elements for HCG9P5 Gene

Enhancers for HCG9P5 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH06H029738 0.8 ENCODE 0.4 -10.0 -10016 0 ELF3 HDGF CTCF ARID4B ZNF2 ZSCAN9 RAD21 TEAD3 CC2D1A GATAD1 HLA-J RPL23AP1 HCG9P5
GH06H029728 0.8 ENCODE dbSUPER 0.4 -19.8 -19834 0 POLR2A MAFG CHD7 NFE2L2 HLA-F ENSG00000227766 RPL23AP1 HCG9P5
GH06H029730 0.7 ENCODE dbSUPER 0.4 -17.6 -17589 0 POLR2A HLF ZIC2 MICE ENSG00000227766 RPL23AP1 HCG9P5
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around HCG9P5 on UCSC Golden Path with GeneCards custom track

Promoters for HCG9P5 Gene
Ensembl Regulatory Elements (ENSRs) TSS Distance (bp) Size (bp) Binding Sites for Transcription Factors within promoters
ENSR00000195328 546 1201 PKNOX1 SIN3A DMAP1 GLI4 YY1 GLIS2 ZNF207 FOS ATF7 SP3

Genomic Location for HCG9P5 Gene

Chromosome:
6
Start:
29,748,254 bp from pter
End:
29,748,648 bp from pter
Size:
395 bases
Orientation:
Plus strand

Genomic View for HCG9P5 Gene

Genes around HCG9P5 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
HCG9P5 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for HCG9P5 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

Proteins for HCG9P5 Gene

Post-translational modifications for HCG9P5 Gene

No Post-translational modifications

No data available for DME Specific Peptides for HCG9P5 Gene

Domains & Families for HCG9P5 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for HCG9P5 Gene

Function for HCG9P5 Gene

Animal Model Products

CRISPR Products

Clone Products

  • Applied Biological Materials Clones for HCG9P5
  • Vectors and viruses for ORF, Lenti, Retro, Adenovirus, AAV, and more

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for HCG9P5 Gene

Localization for HCG9P5 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for HCG9P5 Gene

Pathways & Interactions for HCG9P5 Gene

SuperPathways for HCG9P5 Gene

No Data Available

Interacting Proteins for HCG9P5 Gene

Gene Ontology (GO) - Biological Process for HCG9P5 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for HCG9P5 Gene

Drugs & Compounds for HCG9P5 Gene

No Compound Related Data Available

Transcripts for HCG9P5 Gene

CRISPR Products

Clone Products

  • Applied Biological Materials Clones for HCG9P5
  • Vectors and viruses for ORF, Lenti, Retro, Adenovirus, AAV, and more

Alternative Splicing Database (ASD) splice patterns (SP) for HCG9P5 Gene

No ASD Table

Relevant External Links for HCG9P5 Gene

GeneLoc Exon Structure for
HCG9P5
ECgene alternative splicing isoforms for
HCG9P5

No data available for mRNA/cDNA for HCG9P5 Gene

Expression for HCG9P5 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for HCG9P5 Gene

NURSA nuclear receptor signaling pathways regulating expression of HCG9P5 Gene:

HCG9P5
genes like me logo Genes that share expression patterns with HCG9P5: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for HCG9P5 Gene

Orthologs for HCG9P5 Gene

No data available for Orthologs and Evolution for HCG9P5 Gene

Paralogs for HCG9P5 Gene

No data available for Paralogs for HCG9P5 Gene

Variants for HCG9P5 Gene

Relevant External Links for HCG9P5 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
HCG9P5

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations from dbSNP and Humsavar , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for HCG9P5 Gene

Disorders for HCG9P5 Gene

No disorders were found for HCG9P5 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for HCG9P5 Gene

Publications for HCG9P5 Gene

  1. Molecular dynamics of MHC genesis unraveled by sequence analysis of the 1,796,938-bp HLA class I region. (PMID: 10557312) Shiina T … Inoko H (Proceedings of the National Academy of Sciences of the United States of America 1999) 2 3 60

Products for HCG9P5 Gene

Sources for HCG9P5 Gene

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