Free for academic non-profit institutions. Other users need a Commercial license

Aliases for HCG4P7 Gene

Subcategory (RNA class) for HCG4P7 Gene

lncRNA

Aliases for HCG4P7 Gene

  • HLA Complex Group 4 Pseudogene 7 2 3 5
  • HCGIV-07 Pseudogene 2 3
  • HCGIV-07 3
  • HCGIV-7 3
  • HCGIV.C 3

External Ids for HCG4P7 Gene

ORGUL Members for HCG4P7 Gene

Previous GeneCards Identifiers for HCG4P7 Gene

  • GC00U913609
  • GC06M029959
  • GC06M029961
  • GC06Mc29992
  • GC06M029853
  • GC06Mj29884
  • GC06M029653
  • GC06M029932
  • GC06M030032
  • GC06M030042
  • GC06M030114

Summaries for HCG4P7 Gene

GeneCards Summary for HCG4P7 Gene

HCG4P7 (HLA Complex Group 4 Pseudogene 7) is a Pseudogene, and is affiliated with the lncRNA class.

No data available for Entrez Gene Summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for HCG4P7 Gene

Genomics for HCG4P7 Gene

Regulatory Elements for HCG4P7 Gene

Enhancers for HCG4P7 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH06F030162 0.9 ENCODE 38.5 -276.8 -276759 2.8 HDGF PKNOX1 ARNT ZFP64 SIN3A ARID4B FEZF1 DMAP1 ZNF2 YY1 HCG18 GTF2H4 PPP1R10 ETF1P1 DHX16 PAIP1P1 HLA-U ZNRD1ASP HCG4P7 TCF19
GH06F030194 0.4 ENCODE 38.5 -308.3 -308321 1.6 ZFP64 ARID4B DMAP1 YY1 SLC30A9 ZNF302 SP3 SP5 MXD4 ZHX2 HCG18 GTF2H4 PPP1R10 ETF1P1 DHX16 PAIP1P1 ZNRD1ASP HCG4P7 TRIM31 GNL1
GH06F030746 1.4 FANTOM5 Ensembl ENCODE 22.6 -864.4 -864421 9.5 MLX CREB3L1 ZFP64 DMAP1 FEZF1 YY1 SLC30A9 ZNF143 ZNF548 ZNF263 IER3 GTF2H4 PPP1R10 DHX16 LY6G5B MICA PAIP1P1 DDX39B ABCF1 HLA-K
GH06F030715 1 ENCODE 22.6 -832.5 -832520 7.7 MLX CREB3L1 ZFP64 FEZF1 DMAP1 YY1 SLC30A9 ZNF143 ZNF548 ZNF263 DDX39B LY6G5B PPP1R10 DHX16 MICA HLA-F-AS1 PAIP1P1 HCG9P5 HLA-K MICE
GH06F029976 0.2 ENCODE 20.3 -89.9 -89948 1.7 PKNOX1 ATF1 CREB3L1 ARID4B GLI4 DMAP1 ZNF2 YY1 ZNF121 SLC30A9 HLA-J HCG4P3 HLA-K ZFP57 HLA-H ZNRD1 HLA-A HCG4P7 MICD HCG4
- Elite enhancer/Elite enhancer-gene association Download Table
Download GeneHancer data dump

Enhancers around HCG4P7 on UCSC Golden Path with GeneCards custom track

Promoters for HCG4P7 Gene
Ensembl Regulatory Elements (ENSRs) TSS Distance (bp) Size (bp) Binding Sites for Transcription Factors within promoters
ENSR00000487569 -1393 2800 CTCF NR2F1 CBFB ASH2L TBX21 RAD21 NR2F2 RFX5 POLR2A IKZF1

Genomic Location for HCG4P7 Gene

Chromosome:
6
Start:
29,886,110 bp from pter
End:
29,887,007 bp from pter
Size:
898 bases
Orientation:
Minus strand

Genomic View for HCG4P7 Gene

Genes around HCG4P7 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
HCG4P7 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for HCG4P7 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

Proteins for HCG4P7 Gene

Post-translational modifications for HCG4P7 Gene

No Post-translational modifications

No data available for DME Specific Peptides for HCG4P7 Gene

Domains & Families for HCG4P7 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for HCG4P7 Gene

Function for HCG4P7 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for HCG4P7 Gene

Localization for HCG4P7 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for HCG4P7 Gene

Pathways & Interactions for HCG4P7 Gene

SuperPathways for HCG4P7 Gene

No Data Available

Interacting Proteins for HCG4P7 Gene

Gene Ontology (GO) - Biological Process for HCG4P7 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for HCG4P7 Gene

Transcripts for HCG4P7 Gene

mRNA/cDNA for HCG4P7 Gene

(10) Selected AceView cDNA sequences:
(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for HCG4P7 Gene

No ASD Table

Relevant External Links for HCG4P7 Gene

GeneLoc Exon Structure for
HCG4P7
ECgene alternative splicing isoforms for
HCG4P7

Expression for HCG4P7 Gene

mRNA expression in normal human tissues for HCG4P7 Gene

mRNA expression in normal human tissues for HCG4P7 Gene

NURSA nuclear receptor signaling pathways regulating expression of HCG4P7 Gene:

HCG4P7
genes like me logo Genes that share expression patterns with HCG4P7: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners and mRNA Expression by UniProt/SwissProt for HCG4P7 Gene

Orthologs for HCG4P7 Gene

Evolution for HCG4P7 Gene

ENSEMBL:
Gene Tree for HCG4P7 (if available)
TreeFam:
Gene Tree for HCG4P7 (if available)

No data available for Orthologs for HCG4P7 Gene

Paralogs for HCG4P7 Gene

No data available for Paralogs for HCG4P7 Gene

Variants for HCG4P7 Gene

Relevant External Links for HCG4P7 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
HCG4P7

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations from dbSNP and Humsavar , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for HCG4P7 Gene

Disorders for HCG4P7 Gene

No disorders were found for HCG4P7 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for HCG4P7 Gene

Publications for HCG4P7 Gene

  1. Molecular dynamics of MHC genesis unraveled by sequence analysis of the 1,796,938-bp HLA class I region. (PMID: 10557312) Shiina T. … Inoko H. (Proc. Natl. Acad. Sci. U.S.A. 1999) 2 3 64

Products for HCG4P7 Gene

Sources for HCG4P7 Gene

Content
Loading form....