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Aliases for HCG4P7 Gene

Subcategory (RNA class) for HCG4P7 Gene

lncRNA

Aliases for HCG4P7 Gene

  • HLA Complex Group 4 Pseudogene 7 2 3 5
  • HCGIV-07 Pseudogene 2 3
  • HCGIV-07 3
  • HCGIV-7 3
  • HCGIV.C 3

External Ids for HCG4P7 Gene

ORGUL Members for HCG4P7 Gene

Previous GeneCards Identifiers for HCG4P7 Gene

  • GC00U913609
  • GC06M029959
  • GC06M029961
  • GC06Mc29992
  • GC06M029853
  • GC06Mj29884
  • GC06M029653
  • GC06M029932
  • GC06M030032
  • GC06M030042
  • GC06M030114
  • GC06M030162

Summaries for HCG4P7 Gene

GeneCards Summary for HCG4P7 Gene

HCG4P7 (HLA Complex Group 4 Pseudogene 7) is a Pseudogene, and is affiliated with the lncRNA class.

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for HCG4P7 Gene

Genomics for HCG4P7 Gene

Regulatory Elements for HCG4P7 Gene

Enhancers for HCG4P7 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH06G030162 1.1 ENCODE 30.6 -276.8 -276759 2.8 HDGF PKNOX1 ARNT ZFP64 SIN3A ARID4B DMAP1 FEZF1 ZNF2 YY1 HCG18 HLA-U GTF2H4 HCG4P7 ZNRD1ASP CCHCR1 PPP1R10 ETF1P1 TCF19 TRIM26
GH06G030194 1.1 ENCODE 30.6 -308.3 -308321 1.6 ZFP64 ARID4B DMAP1 YY1 SLC30A9 ZNF302 SP3 SP5 MXD4 ZHX2 HCG18 GTF2H4 TRIM31 HCG4P7 GNL1 ZNRD1ASP CCHCR1 PPP1R10 ETF1P1 TCF19
GH06G028939 1.7 Ensembl ENCODE dbSUPER 17.4 +946.0 945974 3.1 CREB3L1 FEZF1 DMAP1 YY1 SLC30A9 ZNF263 SP3 TBX21 SSRP1 ZNF610 ZKSCAN8 ZKSCAN3 TRIM27 ZKSCAN4 ZSCAN9 HCG4P7 HLA-H HLA-F-AS1 ZSCAN26 MICE
GH06G030746 2.1 FANTOM5 Ensembl ENCODE dbSUPER 13.9 -864.4 -864421 9.5 CREB3L1 MLX AGO1 ZFP64 DMAP1 FEZF1 YY1 SLC30A9 ZNF143 ZNF548 IER3 DHX16 LY6G5B GTF2H4 DDX39B PPP1R10 PAIP1P1 ABCF1 HLA-K VARS2
GH06G029976 1.3 ENCODE dbSUPER 20.3 -89.9 -89948 1.7 HDGF PKNOX1 CREB3L1 AGO1 ARID4B SIN3A DMAP1 ZNF2 YY1 SLC30A9 HLA-J HCG4P3 HLA-K ZFP57 HLA-H ZNRD1 HLA-A HCG4P7 MICD HCG4
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around HCG4P7 on UCSC Golden Path with GeneCards custom track

Promoters for HCG4P7 Gene
Ensembl Regulatory Elements (ENSRs) TSS Distance (bp) Size (bp) Binding Sites for Transcription Factors within promoters
ENSR00000195341 -1093 1801 CTCF IRF2 SUZ12 BACH1 ASH2L RBBP5 RAD21 RFX5 POLR2A ZSCAN29

Genomic Location for HCG4P7 Gene

Chromosome:
6
Start:
29,886,110 bp from pter
End:
29,887,007 bp from pter
Size:
898 bases
Orientation:
Minus strand

Genomic View for HCG4P7 Gene

Genes around HCG4P7 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
HCG4P7 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for HCG4P7 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

Proteins for HCG4P7 Gene

Post-translational modifications for HCG4P7 Gene

No Post-translational modifications

No data available for DME Specific Peptides for HCG4P7 Gene

Domains & Families for HCG4P7 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for HCG4P7 Gene

Function for HCG4P7 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for HCG4P7 Gene

Localization for HCG4P7 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for HCG4P7 Gene

Pathways & Interactions for HCG4P7 Gene

SuperPathways for HCG4P7 Gene

No Data Available

Interacting Proteins for HCG4P7 Gene

Gene Ontology (GO) - Biological Process for HCG4P7 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for HCG4P7 Gene

Drugs & Compounds for HCG4P7 Gene

No Compound Related Data Available

Transcripts for HCG4P7 Gene

mRNA/cDNA for HCG4P7 Gene

(10) Selected AceView cDNA sequences:
(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for HCG4P7 Gene

No ASD Table

Relevant External Links for HCG4P7 Gene

GeneLoc Exon Structure for
HCG4P7
ECgene alternative splicing isoforms for
HCG4P7

Expression for HCG4P7 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for HCG4P7 Gene

mRNA expression in normal human tissues for HCG4P7 Gene

NURSA nuclear receptor signaling pathways regulating expression of HCG4P7 Gene:

HCG4P7
genes like me logo Genes that share expression patterns with HCG4P7: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for HCG4P7 Gene

Orthologs for HCG4P7 Gene

Evolution for HCG4P7 Gene

ENSEMBL:
Gene Tree for HCG4P7 (if available)
TreeFam:
Gene Tree for HCG4P7 (if available)

No data available for Orthologs for HCG4P7 Gene

Paralogs for HCG4P7 Gene

No data available for Paralogs for HCG4P7 Gene

Variants for HCG4P7 Gene

Relevant External Links for HCG4P7 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
HCG4P7

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations from dbSNP and Humsavar , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for HCG4P7 Gene

Disorders for HCG4P7 Gene

No disorders were found for HCG4P7 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for HCG4P7 Gene

Publications for HCG4P7 Gene

  1. Molecular dynamics of MHC genesis unraveled by sequence analysis of the 1,796,938-bp HLA class I region. (PMID: 10557312) Shiina T. … Inoko H. (Proc. Natl. Acad. Sci. U.S.A. 1999) 2 3 64

Products for HCG4P7 Gene

Sources for HCG4P7 Gene

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