Free for academic non-profit institutions. Other users need a Commercial license

Aliases for HCG4P7 Gene

Subcategory (RNA class) for HCG4P7 Gene

lncRNA

Aliases for HCG4P7 Gene

  • HLA Complex Group 4 Pseudogene 7 2 3
  • HCGIV-07 Pseudogene 2 3
  • HCGIV-07 3
  • HCGIV-7 3
  • HCGIV.C 3

External Ids for HCG4P7 Gene

ORGUL Members for HCG4P7 Gene

Previous GeneCards Identifiers for HCG4P7 Gene

  • GC00U913609
  • GC06M029959
  • GC06M029961
  • GC06Mc29992
  • GC06M029853
  • GC06Mj29884
  • GC06M029653
  • GC06M029932
  • GC06M030032
  • GC06M030042
  • GC06M030114
  • GC06M030162
  • GC06M030203
  • GC06M030256

Summaries for HCG4P7 Gene

GeneCards Summary for HCG4P7 Gene

HCG4P7 (HLA Complex Group 4 Pseudogene 7) is a Pseudogene, and is affiliated with the lncRNA class.

Additional gene information for HCG4P7 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for HCG4P7 Gene

Genomics for HCG4P7 Gene

GeneHancer (GH) Regulatory Elements for HCG4P7 Gene

Promoters and enhancers for HCG4P7 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH06I029886 Promoter/Enhancer 1.2 Ensembl ENCODE 568.5 -0.7 -728 3 IRF2 BACH1 YY1 RFX5 POLR2A ZSCAN29 IKZF2 RUNX3 EZH2 ZNF687 HLA-H HCG4P7 ERVK9-12 HLA-J HLA-A ZFP57 HCG4P5 MICD HLA-K ZNRD1
GH06I030715 Promoter/Enhancer 2.4 EPDnew Ensembl ENCODE dbSUPER 35.8 -832.5 -832519 7.7 CLOCK MLX ZFP64 FEZF1 DMAP1 IRF4 YY1 SLC30A9 ZNF213 E2F8 MDC1 TUBB DDX39B TRIM39 DHX16 LY6G5B PPP1R10 ZNRD1 PAIP1P1 NRM
GH06I030162 Promoter/Enhancer 1.5 EPDnew ENCODE 48 -276.8 -276759 2.8 ZFP64 ARID4B DMAP1 YY1 SLC30A9 ZNF213 ZNF302 SP3 SP5 ZC3H11A TRIM10 TRIM15 MDC1 GTF2H4 HCG18 ZNRD1ASP PPP1R10 TRIM39 ETF1P1 PAIP1P1
GH06I030611 Promoter/Enhancer 2.5 EPDnew Ensembl ENCODE dbSUPER 27 -728.5 -728545 8.7 CLOCK MLX ZFP64 DMAP1 YY1 SLC30A9 ZNF213 E2F8 ZNF143 SP3 PPP1R10 MRPS18B DDX39B MDC1 TRIM39 ABCF1 NRM DHX16 ZNRD1 TRIM26
GH06I028894 Promoter/Enhancer 1.8 Ensembl ENCODE dbSUPER 27.6 +990.1 990118 3.9 CLOCK MLX ZFP64 IRF4 YY1 ZNF213 E2F8 ZNF143 SP3 NFYC HCG14 TRIM27 ZKSCAN8 ZSCAN12 ZKSCAN3 ZSCAN9 ZKSCAN4 HCG4P7 ZSCAN23 HLA-H
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data dump

GeneHancers around HCG4P7 on UCSC Golden Path with GeneCards custom track

Genomic Locations for HCG4P7 Gene

Genomic Locations for HCG4P7 Gene
chr6:29,886,110-29,887,007
(GRCh38/hg38)
Size:
898 bases
Orientation:
Minus strand
chr6:29,853,887-29,854,784
(GRCh37/hg19)

Genomic View for HCG4P7 Gene

Genes around HCG4P7 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
HCG4P7 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for HCG4P7 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

Proteins for HCG4P7 Gene

Post-translational modifications for HCG4P7 Gene

No Post-translational modifications

No data available for DME Specific Peptides for HCG4P7 Gene

Domains & Families for HCG4P7 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for HCG4P7 Gene

Function for HCG4P7 Gene

Phenotypes From GWAS Catalog for HCG4P7 Gene

Animal Model Products

Clone Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for HCG4P7 Gene

Localization for HCG4P7 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for HCG4P7 Gene

Pathways & Interactions for HCG4P7 Gene

SuperPathways for HCG4P7 Gene

No Data Available

Interacting Proteins for HCG4P7 Gene

Gene Ontology (GO) - Biological Process for HCG4P7 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for HCG4P7 Gene

Drugs & Compounds for HCG4P7 Gene

No Compound Related Data Available

Transcripts for HCG4P7 Gene

mRNA/cDNA for HCG4P7 Gene

(10) Selected AceView cDNA sequences:
(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Clone Products

Alternative Splicing Database (ASD) splice patterns (SP) for HCG4P7 Gene

No ASD Table

Relevant External Links for HCG4P7 Gene

GeneLoc Exon Structure for
HCG4P7
ECgene alternative splicing isoforms for
HCG4P7

Expression for HCG4P7 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for HCG4P7 Gene

mRNA expression in normal human tissues for HCG4P7 Gene

NURSA nuclear receptor signaling pathways regulating expression of HCG4P7 Gene:

HCG4P7
genes like me logo Genes that share expression patterns with HCG4P7: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for HCG4P7 Gene

Orthologs for HCG4P7 Gene

Evolution for HCG4P7 Gene

ENSEMBL:
Gene Tree for HCG4P7 (if available)
TreeFam:
Gene Tree for HCG4P7 (if available)

No data available for Orthologs for HCG4P7 Gene

Paralogs for HCG4P7 Gene

No data available for Paralogs for HCG4P7 Gene

Variants for HCG4P7 Gene

Additional Variant Information for HCG4P7 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
HCG4P7

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations from dbSNP and Humsavar , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for HCG4P7 Gene

Disorders for HCG4P7 Gene

No disorders were found for HCG4P7 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for HCG4P7 Gene

Publications for HCG4P7 Gene

  1. Molecular dynamics of MHC genesis unraveled by sequence analysis of the 1,796,938-bp HLA class I region. (PMID: 10557312) Shiina T … Inoko H (Proceedings of the National Academy of Sciences of the United States of America 1999) 2 3 58

Products for HCG4P7 Gene

Sources for HCG4P7 Gene

Content
Loading form....