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Aliases for HCG4P5 Gene

Subcategory (RNA class) for HCG4P5 Gene

antisense

Aliases for HCG4P5 Gene

  • HLA Complex Group 4 Pseudogene 5 2 3 5
  • HCGIV-05 Pseudogene 2 3
  • HCGIV-05 3
  • HCGIV-5 3
  • HCGIV.4 3

External Ids for HCG4P5 Gene

ORGUL Members for HCG4P5 Gene

Previous GeneCards Identifiers for HCG4P5 Gene

  • GC00U913608
  • GC06M030014
  • GC06M030016
  • GC06M029912
  • GC06M029914
  • GC06M029930
  • GC06M029942
  • GC06M029949
  • GC06M029960
  • GC06M029946
  • GC06M030035
  • GC06M030050
  • GC06M030061
  • GC06M030174

Summaries for HCG4P5 Gene

GeneCards Summary for HCG4P5 Gene

HCG4P5 (HLA Complex Group 4 Pseudogene 5) is a Pseudogene, and is affiliated with the antisense RNA class.

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for HCG4P5 Gene

Genomics for HCG4P5 Gene

Regulatory Elements for HCG4P5 Gene

Enhancers for HCG4P5 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH06G029963 2 FANTOM5 Ensembl ENCODE dbSUPER 20.7 -24.4 -24449 4.8 MLX CREB3L1 ZFP64 FEZF1 DMAP1 YY1 SLC30A9 ZNF143 ZNF263 SP3 HLA-A HLA-K HLA-W HLA-H HLA-J HCG4P5 MICD HCG4 IFITM4P HLA-F
GH06G029940 1.3 ENCODE dbSUPER 24.9 -0.5 -460 3.7 HDGF PKNOX1 FOXA2 WRNIP1 ZFP64 ARID4B DMAP1 ZNF2 YY1 ZNF143 HLA-J HLA-T HLA-G HLA-H HLA-W HLA-K HLA-A HCG4P3 ZFP57 HLA-U
GH06G029722 1.2 ENCODE dbSUPER 21.7 +217.2 217219 4.1 ATF1 WRNIP1 SIN3A GLIS2 CBX5 ZNF143 ZNF207 FOS ZNF263 NFYC HLA-F HLA-J ZFP57 HLA-H HCG4P5 IFITM4P HLA-F-AS1 DHX16 MICE HCG4P7
GH06G029751 1.1 ENCODE 23 +189.0 188958 2.0 PKNOX1 CREB3L1 ARNT ZFP64 WRNIP1 ARID4B SIN3A ZNF2 YY1 ZNF766 RPL23AP1 HCG4P5 IFITM4P ZNF311 ZNRD1ASP ZFP57 MICE HLA-A HCG18 ZNRD1
GH06G029952 0.9 Ensembl ENCODE 26.1 -11.5 -11494 1.3 FOSL1 ZNF146 JUND ATF3 NR2F1 JUN ADNP NR2F6 HLA-J HLA-T HLA-K HLA-A HCG4P5 ZFP57 MICD HCG4P3 HCG4P4 PIR61557
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around HCG4P5 on UCSC Golden Path with GeneCards custom track

Promoters for HCG4P5 Gene
Ensembl Regulatory Elements (ENSRs) TSS Distance (bp) Size (bp) Binding Sites for Transcription Factors within promoters
ENSR00000195346 -999 2001 HDGF FOXA2 ATF1 WRNIP1 ARID4B DMAP1 ZNF2 YY1 GLIS2 ZNF143

Genomic Location for HCG4P5 Gene

Chromosome:
6
Start:
29,940,912 bp from pter
End:
29,941,801 bp from pter
Size:
890 bases
Orientation:
Minus strand

Genomic View for HCG4P5 Gene

Genes around HCG4P5 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
HCG4P5 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for HCG4P5 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

Proteins for HCG4P5 Gene

Post-translational modifications for HCG4P5 Gene

No Post-translational modifications

No data available for DME Specific Peptides for HCG4P5 Gene

Domains & Families for HCG4P5 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for HCG4P5 Gene

Function for HCG4P5 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for HCG4P5 Gene

Localization for HCG4P5 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for HCG4P5 Gene

Pathways & Interactions for HCG4P5 Gene

SuperPathways for HCG4P5 Gene

No Data Available

Interacting Proteins for HCG4P5 Gene

Gene Ontology (GO) - Biological Process for HCG4P5 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for HCG4P5 Gene

Drugs & Compounds for HCG4P5 Gene

No Compound Related Data Available

Transcripts for HCG4P5 Gene

mRNA/cDNA for HCG4P5 Gene

(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for HCG4P5 Gene

No ASD Table

Relevant External Links for HCG4P5 Gene

GeneLoc Exon Structure for
HCG4P5
ECgene alternative splicing isoforms for
HCG4P5

Expression for HCG4P5 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for HCG4P5 Gene

mRNA differential expression in normal tissues according to GTEx for HCG4P5 Gene

This gene is overexpressed in Whole Blood (x11.3).

NURSA nuclear receptor signaling pathways regulating expression of HCG4P5 Gene:

HCG4P5
genes like me logo Genes that share expression patterns with HCG4P5: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for HCG4P5 Gene

Orthologs for HCG4P5 Gene

Evolution for HCG4P5 Gene

ENSEMBL:
Gene Tree for HCG4P5 (if available)
TreeFam:
Gene Tree for HCG4P5 (if available)

No data available for Orthologs for HCG4P5 Gene

Paralogs for HCG4P5 Gene

No data available for Paralogs for HCG4P5 Gene

Variants for HCG4P5 Gene

Relevant External Links for HCG4P5 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
HCG4P5

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations from dbSNP and Humsavar , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for HCG4P5 Gene

Disorders for HCG4P5 Gene

No disorders were found for HCG4P5 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for HCG4P5 Gene

Publications for HCG4P5 Gene

  1. Molecular dynamics of MHC genesis unraveled by sequence analysis of the 1,796,938-bp HLA class I region. (PMID: 10557312) Shiina T. … Inoko H. (Proc. Natl. Acad. Sci. U.S.A. 1999) 2 3 64

Products for HCG4P5 Gene

Sources for HCG4P5 Gene

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