Free for academic non-profit institutions. Other users need a Commercial license

Aliases for HCG4P3 Gene

Subcategory (RNA class) for HCG4P3 Gene

lncRNA

Aliases for HCG4P3 Gene

  • HLA Complex Group 4 Pseudogene 3 2 3
  • HCGIV-03 Pseudogene 2 3
  • HCGIV-03 3
  • HCGIV-3 3
  • HCGIV.2 3

External Ids for HCG4P3 Gene

ORGUL Members for HCG4P3 Gene

Previous GeneCards Identifiers for HCG4P3 Gene

  • GC00U913606
  • GC06U900491
  • GC06M030081
  • GC06M030083
  • GC06M029972
  • GC06M029773

Summaries for HCG4P3 Gene

GeneCards Summary for HCG4P3 Gene

HCG4P3 (HLA Complex Group 4 Pseudogene 3) is a Pseudogene, and is affiliated with the lncRNA class.

Additional gene information for HCG4P3 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for HCG4P3 Gene

Genomics for HCG4P3 Gene

GeneHancer (GH) Regulatory Elements for HCG4P3 Gene

Promoters and enhancers for HCG4P3 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH06I030006 Enhancer 0.5 Ensembl 587.1 -1.1 -1072 1.7 SUZ12 REST ZNF48 EZH2 HCG4P3 HLA-J ZNRD1 ZNRD1ASP HCG4P7 TRIM31-AS1 TRIM31 HLA-A ETF1P1
GH06I030715 Promoter/Enhancer 2.4 EPDnew Ensembl ENCODE dbSUPER 39.7 -713.7 -713698 7.7 CLOCK MLX ZFP64 FEZF1 DMAP1 IRF4 YY1 SLC30A9 ZNF213 E2F8 MDC1 TUBB DDX39B TRIM39 DHX16 LY6G5B PPP1R10 ZNRD1 PAIP1P1 NRM
GH06I030060 Promoter/Enhancer 2.1 EPDnew Ensembl ENCODE 38.1 -55.9 -55885 3.3 HDGF PKNOX1 SMAD1 FOXA2 MLX ARNT ZFP64 ARID4B SIN3A DMAP1 ZNRD1 GC06M030331 GC06M030334 GC06M030339 GC06M030344 GC06M030345 GC06M030346 GC06M030348 GC06M030349 ZNRD1ASP
GH06I030065 Promoter/Enhancer 2.1 EPDnew Ensembl ENCODE 36.6 -61.0 -60977 3 ZFP64 DMAP1 YBX1 YY1 SLC30A9 E2F8 ZNF143 ZNF263 SP3 NFYC PPP1R11 HCG4P3 TRIM26 TRIM39 MDC1 PPP1R10 ZNRD1 HLA-A ETF1P1 PAIP1P1
GH06I030907 Promoter/Enhancer 2.1 EPDnew Ensembl ENCODE 32.4 -902.6 -902629 2.2 CLOCK DMAP1 YBX1 IRF4 YY1 ZNF213 E2F8 ZNF416 ZNF143 ZNF548 GTF2H4 VARS2 GC06P031581 MDC1 DDX39B LY6G5B TRIM39 LSM2 PPP1R10 HCG18
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data dump

GeneHancers around HCG4P3 on UCSC Golden Path with GeneCards custom track

Genomic Locations for HCG4P3 Gene

Genomic Locations for HCG4P3 Gene
chr6:30,004,845-30,005,828
(GRCh38/hg38)
Size:
984 bases
Orientation:
Minus strand
chr6:29,972,622-29,973,605
(GRCh37/hg19)

Genomic View for HCG4P3 Gene

Genes around HCG4P3 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
HCG4P3 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for HCG4P3 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

Proteins for HCG4P3 Gene

Post-translational modifications for HCG4P3 Gene

No Post-translational modifications

No data available for DME Specific Peptides for HCG4P3 Gene

Domains & Families for HCG4P3 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for HCG4P3 Gene

Function for HCG4P3 Gene

Phenotypes From GWAS Catalog for HCG4P3 Gene

Animal Model Products

Clone Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for HCG4P3 Gene

Localization for HCG4P3 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for HCG4P3 Gene

Pathways & Interactions for HCG4P3 Gene

SuperPathways for HCG4P3 Gene

No Data Available

Interacting Proteins for HCG4P3 Gene

Gene Ontology (GO) - Biological Process for HCG4P3 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for HCG4P3 Gene

Drugs & Compounds for HCG4P3 Gene

No Compound Related Data Available

Transcripts for HCG4P3 Gene

mRNA/cDNA for HCG4P3 Gene

(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Clone Products

Alternative Splicing Database (ASD) splice patterns (SP) for HCG4P3 Gene

No ASD Table

Relevant External Links for HCG4P3 Gene

GeneLoc Exon Structure for
HCG4P3
ECgene alternative splicing isoforms for
HCG4P3

Expression for HCG4P3 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for HCG4P3 Gene

mRNA expression in normal human tissues for HCG4P3 Gene

NURSA nuclear receptor signaling pathways regulating expression of HCG4P3 Gene:

HCG4P3
genes like me logo Genes that share expression patterns with HCG4P3: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for HCG4P3 Gene

Orthologs for HCG4P3 Gene

Evolution for HCG4P3 Gene

ENSEMBL:
Gene Tree for HCG4P3 (if available)
TreeFam:
Gene Tree for HCG4P3 (if available)

No data available for Orthologs for HCG4P3 Gene

Paralogs for HCG4P3 Gene

No data available for Paralogs for HCG4P3 Gene

Variants for HCG4P3 Gene

Additional Variant Information for HCG4P3 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
HCG4P3

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations from dbSNP and Humsavar , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for HCG4P3 Gene

Disorders for HCG4P3 Gene

No disorders were found for HCG4P3 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for HCG4P3 Gene

Publications for HCG4P3 Gene

  1. Molecular dynamics of MHC genesis unraveled by sequence analysis of the 1,796,938-bp HLA class I region. (PMID: 10557312) Shiina T … Inoko H (Proceedings of the National Academy of Sciences of the United States of America 1999) 2 3 58

Products for HCG4P3 Gene

Sources for HCG4P3 Gene

Content
Loading form....