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Aliases for HCG4P3 Gene

Subcategory (RNA class) for HCG4P3 Gene

lncRNA

Aliases for HCG4P3 Gene

  • HLA Complex Group 4 Pseudogene 3 2 3 5
  • HCGIV-03 Pseudogene 2 3
  • HCGIV-03 3
  • HCGIV-3 3
  • HCGIV.2 3

External Ids for HCG4P3 Gene

ORGUL Members for HCG4P3 Gene

Previous GeneCards Identifiers for HCG4P3 Gene

  • GC00U913606
  • GC06U900491
  • GC06M030081
  • GC06M030083
  • GC06M029972
  • GC06M029773

Summaries for HCG4P3 Gene

GeneCards Summary for HCG4P3 Gene

HCG4P3 (HLA Complex Group 4 Pseudogene 3) is a Pseudogene, and is affiliated with the lncRNA class.

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for HCG4P3 Gene

Genomics for HCG4P3 Gene

Regulatory Elements for HCG4P3 Gene

Enhancers for HCG4P3 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH06G030065 1.2 ENCODE 36.6 -61.0 -60978 3.0 CREB3L1 ZFP64 DMAP1 YBX1 YY1 SLC30A9 ZNF143 ZNF263 SP3 NFYC HCG4P3 PPP1R10 HLA-A TRIM26 PAIP1P1 IFITM4P ETF1P1 ZNRD1 HCG18 GTF2H4
GH06G030074 1.2 Ensembl ENCODE 36.6 -69.7 -69657 2.6 FOXA2 ARID4B SIN3A ZNF2 ZNF48 GLIS2 ZNF143 FOS SP5 ZHX2 HCG4P3 HLA-K ZFP57 ZNRD1 ZNRD1ASP HLA-A RNF39 MICE PPP1R11
GH06G029976 1.3 ENCODE dbSUPER 30.6 +28.9 28874 1.7 HDGF PKNOX1 CREB3L1 AGO1 ARID4B SIN3A DMAP1 ZNF2 YY1 SLC30A9 HLA-J HCG4P3 HLA-K ZFP57 HLA-H ZNRD1 HLA-A HCG4P7 MICD HCG4
GH06G029940 1.3 ENCODE dbSUPER 28 +63.6 63568 3.7 HDGF PKNOX1 FOXA2 WRNIP1 ZFP64 ARID4B DMAP1 ZNF2 YY1 ZNF143 HLA-J HLA-T HLA-G HLA-H HLA-W HLA-K HLA-A HCG4P3 ZFP57 HLA-U
GH06G030060 1.2 ENCODE 28.1 -55.9 -55885 3.3 MLX CREB3L1 ZFP64 DMAP1 YY1 SLC30A9 ZNF143 ZNF263 SP3 NFYC HCG4P3 HLA-H HLA-A PPP1R10 ZNRD1 TRIM26 PAIP1P1 HLA-K HCG4B HLA-W
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around HCG4P3 on UCSC Golden Path with GeneCards custom track

Genomic Location for HCG4P3 Gene

Chromosome:
6
Start:
30,004,845 bp from pter
End:
30,005,828 bp from pter
Size:
984 bases
Orientation:
Minus strand

Genomic View for HCG4P3 Gene

Genes around HCG4P3 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
HCG4P3 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for HCG4P3 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

Proteins for HCG4P3 Gene

Post-translational modifications for HCG4P3 Gene

No Post-translational modifications

No data available for DME Specific Peptides for HCG4P3 Gene

Domains & Families for HCG4P3 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for HCG4P3 Gene

Function for HCG4P3 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for HCG4P3 Gene

Localization for HCG4P3 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for HCG4P3 Gene

Pathways & Interactions for HCG4P3 Gene

SuperPathways for HCG4P3 Gene

No Data Available

Interacting Proteins for HCG4P3 Gene

Gene Ontology (GO) - Biological Process for HCG4P3 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for HCG4P3 Gene

Drugs & Compounds for HCG4P3 Gene

No Compound Related Data Available

Transcripts for HCG4P3 Gene

mRNA/cDNA for HCG4P3 Gene

(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for HCG4P3 Gene

No ASD Table

Relevant External Links for HCG4P3 Gene

GeneLoc Exon Structure for
HCG4P3
ECgene alternative splicing isoforms for
HCG4P3

Expression for HCG4P3 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for HCG4P3 Gene

mRNA expression in normal human tissues for HCG4P3 Gene

NURSA nuclear receptor signaling pathways regulating expression of HCG4P3 Gene:

HCG4P3
genes like me logo Genes that share expression patterns with HCG4P3: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for HCG4P3 Gene

Orthologs for HCG4P3 Gene

Evolution for HCG4P3 Gene

ENSEMBL:
Gene Tree for HCG4P3 (if available)
TreeFam:
Gene Tree for HCG4P3 (if available)

No data available for Orthologs for HCG4P3 Gene

Paralogs for HCG4P3 Gene

No data available for Paralogs for HCG4P3 Gene

Variants for HCG4P3 Gene

Relevant External Links for HCG4P3 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
HCG4P3

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations from dbSNP and Humsavar , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for HCG4P3 Gene

Disorders for HCG4P3 Gene

No disorders were found for HCG4P3 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for HCG4P3 Gene

Publications for HCG4P3 Gene

  1. Molecular dynamics of MHC genesis unraveled by sequence analysis of the 1,796,938-bp HLA class I region. (PMID: 10557312) Shiina T. … Inoko H. (Proc. Natl. Acad. Sci. U.S.A. 1999) 2 3 64

Products for HCG4P3 Gene

Sources for HCG4P3 Gene

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