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Aliases for HCG4 Gene

Subcategory (RNA class) for HCG4 Gene

antisense

Quality Score for this RNA gene is

3

Aliases for HCG4 Gene

  • HLA Complex Group 4 (Non-Protein Coding) 2 3 5
  • HLA Complex Group 4 Pseudogene 10 2 3
  • HLA Complex Group 4 2
  • HCGIV-10 Pseudogene 3
  • HCGIV-10 3
  • HCGIV.9 3
  • HCG4P10 3

External Ids for HCG4 Gene

ORGUL Members for HCG4 Gene

Previous HGNC Symbols for HCG4 Gene

  • HCG4P10

Previous GeneCards Identifiers for HCG4 Gene

  • GC06M029529
  • GC06M029867
  • GC06M029869
  • GC06M029870
  • GC06M029871
  • GC06M029873
  • GC06M029876
  • GC06M029881
  • GC06M029761
  • GC06M029774
  • GC06M029778
  • GC06M029792
  • GC06M029794
  • GC06M029806
  • GC06M029809
  • GC06M029812
  • GC06M029818
  • GC06M029825

Summaries for HCG4 Gene

GeneCards Summary for HCG4 Gene

HCG4 (HLA Complex Group 4 (Non-Protein Coding)) is an RNA Gene, and is affiliated with the antisense RNA class.

No data available for Entrez Gene Summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for HCG4 Gene

Genomics for HCG4 Gene

Regulatory Elements for HCG4 Gene

Enhancers for HCG4 Gene
GeneHancer Identifier Score Enhancer Sources TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Other Gene Targets for Enhancer

Enhancers around HCG4 on UCSC Golden Path with GeneCards custom track

Promoters for HCG4 Gene
Ensembl Regulatory Elements (ENSRs) TSS Distance (bp) Size (bp) Binding Sites for Transcription Factors within promoters

ENSRs around HCG4 on UCSC Golden Path with GeneCards custom track

Genomic Location for HCG4 Gene

Chromosome:
6
Start:
29,791,031 bp from pter
End:
29,793,073 bp from pter
Size:
2,043 bases
Orientation:
Minus strand

Genomic View for HCG4 Gene

Genes around HCG4 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
HCG4 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for HCG4 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

Proteins for HCG4 Gene

Post-translational modifications for HCG4 Gene

No Post-translational modifications

No data available for DME Specific Peptides for HCG4 Gene

Domains & Families for HCG4 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for HCG4 Gene

Function for HCG4 Gene

Phenotypes for HCG4 Gene

GenomeRNAi human phenotypes for HCG4:
genes like me logo Genes that share phenotypes with HCG4: view

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for HCG4 Gene

Localization for HCG4 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for HCG4 Gene

Pathways & Interactions for HCG4 Gene

SuperPathways for HCG4 Gene

No Data Available

Interacting Proteins for HCG4 Gene

Gene Ontology (GO) - Biological Process for HCG4 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for HCG4 Gene

Drugs & Compounds for HCG4 Gene

No Compound Related Data Available

Transcripts for HCG4 Gene

mRNA/cDNA for HCG4 Gene

(4) Additional mRNA sequences :
(19) Selected AceView cDNA sequences:
(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Unigene Clusters for HCG4 Gene

HLA complex group 4 (non-protein coding):
Representative Sequences:

Alternative Splicing Database (ASD) splice patterns (SP) for HCG4 Gene

No ASD Table

Relevant External Links for HCG4 Gene

GeneLoc Exon Structure for
HCG4
ECgene alternative splicing isoforms for
HCG4

Expression for HCG4 Gene

mRNA expression in normal human tissues for HCG4 Gene

SOURCE GeneReport for Unigene cluster for HCG4 Gene Hs.660431

genes like me logo Genes that share expression patterns with HCG4: view

Primer Products

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , mRNA Expression by UniProt/SwissProt and Protein tissue co-expression partners for HCG4 Gene

Orthologs for HCG4 Gene

Evolution for HCG4 Gene

ENSEMBL:
Gene Tree for HCG4 (if available)
TreeFam:
Gene Tree for HCG4 (if available)

No data available for Orthologs for HCG4 Gene

Paralogs for HCG4 Gene

No data available for Paralogs for HCG4 Gene

Variants for HCG4 Gene

Structural Variations from Database of Genomic Variants (DGV) for HCG4 Gene

Variant ID Type Subtype PubMed ID
esv25966 CNV Gain+Loss 19812545
nsv428139 CNV Gain 18775914
nsv508397 CNV Loss 20534489
dgv1039e201 CNV Deletion 23290073
nsv10809 CNV Gain 18304495
nsv883532 CNV Loss 21882294
esv2731768 CNV Deletion 23290073
esv2731772 CNV Deletion 23290073
dgv1086e199 CNV Deletion 23128226
dgv6446n71 CNV Loss 21882294
nsv883537 CNV Loss 21882294
nsv883539 CNV Loss 21882294

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations from dbSNP and Humsavar , Variation tolerance and Relevant External Links for HCG4 Gene

Disorders for HCG4 Gene

Relevant External Links for HCG4

Genetic Association Database (GAD)
HCG4
Human Genome Epidemiology (HuGE) Navigator
HCG4
Atlas of Genetics and Cytogenetics in Oncology and Haematology:
HCG4

No disorders were found for HCG4 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for HCG4 Gene

Publications for HCG4 Gene

  1. SNP mapping and candidate gene sequencing in the class I region of the HLA complex: searching for multiple sclerosis susceptibility genes in Tasmanians. (PMID: 17971048) Burfoot R.K. … Rubio J.P. (Tissue Antigens 2008) 3 23 48 67
  2. Down-regulation of HLA Class I and NKG2D ligands through a concerted action of MAPK and DNA methyltransferases in colorectal cancer cells. (PMID: 19569244) Sers C. … SchAofer R. (Int. J. Cancer 2009) 3
  3. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg R.L. … Marra M.A. (Proc. Natl. Acad. Sci. U.S.A. 2002) 3
  4. Molecular dynamics of MHC genesis unraveled by sequence analysis of the 1,796,938-bp HLA class I region. (PMID: 10557312) Shiina T. … Inoko H. (Proc. Natl. Acad. Sci. U.S.A. 1999) 3
  5. A 356-Kb sequence of the subtelomeric part of the MHC class I region. (PMID: 10727083) Hampe A. … Galibert F. (DNA Seq. 1999) 3

Products for HCG4 Gene

Sources for HCG4 Gene

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