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Aliases for HCG4 Gene

Subcategory (RNA class) for HCG4 Gene

antisense

Quality Score for this RNA gene is

3

Aliases for HCG4 Gene

  • HLA Complex Group 4 (Non-Protein Coding) 2 3
  • HLA Complex Group 4 Pseudogene 10 2 3
  • HLA Complex Group 4 2
  • HCGIV-10 Pseudogene 3
  • HCGIV-10 3
  • HCGIV.9 3
  • HCG4P10 3

External Ids for HCG4 Gene

ORGUL Members for HCG4 Gene

Previous Symbols for HCG4 Gene

  • HCG4P10

Summaries for HCG4 Gene

GeneCards Summary for HCG4 Gene

HCG4 (HLA Complex Group 4 (Non-Protein Coding)) is a RNA Gene, and belongs to antisense RNA class.

No data available for Entrez Gene Summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for HCG4 Gene

Genomics for HCG4 Gene

Genomic Location for HCG4 Gene

Start:
29,791,031 bp from pter
End:
29,793,073 bp from pter
Size:
2,043 bases
Orientation:
Minus strand

Genomic View for HCG4 Gene

UCSC Golden Path with GeneCards custom track
Cytogenetic band:
Genomic Location for HCG4 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

Regulatory Elements for HCG4 Gene

Proteins for HCG4 Gene

Post-translational modifications for HCG4 Gene

No Post-translational modifications

No data available for DME Specific Peptides for HCG4 Gene

Domains for HCG4 Gene

Gene Families for HCG4 Gene

HGNC:
  • LNCRNA :Long non-coding RNAs
genes like me logo Genes that share domains with HCG4: view

No data available for Protein Domains and UniProtKB/Swiss-Prot for HCG4 Gene

Function for HCG4 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Animal Models , miRNA , Transcription Factor Targeting and HOMER Transcription for HCG4 Gene

Localization for HCG4 Gene

No data available for Gene Ontology (GO) - Cellular Components for HCG4 Gene

Pathways for HCG4 Gene

SuperPathways for HCG4 Gene

No Data Available

Interacting Proteins for HCG4 Gene

Gene Ontology (GO) - Biological Process for HCG4 Gene

None

No data available for Pathways by source for HCG4 Gene

Transcripts for HCG4 Gene

mRNA/cDNA for HCG4 Gene

(4) Additional mRNA sequences :
(19) Selected AceView cDNA sequences:
(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Unigene Clusters for HCG4 Gene

HLA complex group 4 (non-protein coding):
Representative Sequences:

Alternative Splicing Database (ASD) splice patterns (SP) for HCG4 Gene

No ASD Table

Relevant External Links for HCG4 Gene

GeneLoc Exon Structure for
HCG4
ECgene alternative splicing isoforms for
HCG4

Expression for HCG4 Gene

mRNA expression in normal human tissues for HCG4 Gene

SOURCE GeneReport for Unigene cluster for HCG4 Gene Hs.660431

genes like me logo Genes that share expressions with HCG4: view

Orthologs for HCG4 Gene

This gene was present in the common ancestor of human and mouse.

Orthologs for HCG4 Gene

Organism Taxonomy Gene Similarity Type Details
mouse
(Mus musculus)
Mammalia 5430410E06Rik 16
Species with no ortholog for HCG4:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • chicken (Gallus gallus)
  • chimpanzee (Pan troglodytes)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • cow (Bos Taurus)
  • dog (Canis familiaris)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • fruit fly (Drosophila melanogaster)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • lizard (Anolis carolinensis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • oppossum (Monodelphis domestica)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • platypus (Ornithorhynchus anatinus)
  • rainbow trout (Oncorhynchus mykiss)
  • rat (Rattus norvegicus)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea squirt (Ciona intestinalis)
  • sea squirt (Ciona savignyi)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • tropical clawed frog (Silurana tropicalis)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)
  • zebrafish (Danio rerio)

Evolution for HCG4 Gene

ENSEMBL:
Gene Tree for HCG4 (if available)
TreeFam:
Gene Tree for HCG4 (if available)

Paralogs for HCG4 Gene

No data available for Paralogs for HCG4 Gene

Variants for HCG4 Gene

Structural Variations from Database of Genomic Variants (DGV) for HCG4 Gene

Variant ID Type Subtype PubMed ID
esv25966 CNV Gain+Loss 19812545
nsv428139 CNV Gain 18775914
nsv508397 CNV Loss 20534489
dgv1039e201 CNV Deletion 23290073
nsv10809 CNV Gain 18304495
nsv883532 CNV Loss 21882294
esv2731768 CNV Deletion 23290073
esv2731772 CNV Deletion 23290073
dgv1086e199 CNV Deletion 23128226
dgv6446n71 CNV Loss 21882294
nsv883537 CNV Loss 21882294
nsv883539 CNV Loss 21882294

Relevant External Links for HCG4 Gene

HapMap Linkage Disequilibrium report
HCG4

No data available for Sequence variations from dbSNP and Humsavar for HCG4 Gene

Disorders for HCG4 Gene

Relevant External Links for HCG4

Genetic Association Database (GAD)
HCG4
Human Genome Epidemiology (HuGE) Navigator
HCG4
genes like me logo Genes that share disorders with HCG4: view

No data available for UniProtKB/Swiss-Prot for HCG4 Gene

Publications for HCG4 Gene

  1. SNP mapping and candidate gene sequencing in the class I region of the HLA complex: searching for multiple sclerosis susceptibility genes in Tasmanians. (PMID: 17971048) Burfoot R.K. … Rubio J.P. (Tissue Antigens 2008) 3 23 49
  2. Molecular dynamics of MHC genesis unraveled by sequence analysis of the 1,796,938-bp HLA class I region. (PMID: 10557312) Shiina T. … Inoko H. (Proc. Natl. Acad. Sci. U.S.A. 1999) 3
  3. A 356-Kb sequence of the subtelomeric part of the MHC class I region. (PMID: 10727083) Hampe A. … Galibert F. (DNA Seq. 1999) 3
  4. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg R.L. … Marra M.A. (Proc. Natl. Acad. Sci. U.S.A. 2002) 3
  5. Down-regulation of HLA Class I and NKG2D ligands through a concerted action of MAPK and DNA methyltransferases in colorectal cancer cells. (PMID: 19569244) Sers C. … SchAofer R. (Int. J. Cancer 2009) 3

Products for HCG4 Gene

  • QIAGEN qRT-PCR Assays for microRNAs that regulate HCG4
    • QuantiTect SYBR Green Assays in human,mouse,rat
    • Pre-validated RT² qPCR Primer Assay in human,mouse,rat
    • QuantiFast Probe-based Assays in human,mouse,rat
    • Predesigned siRNA for gene silencing in human,mouse,rat for HCG4
    • Block miRNA regulation of HCG4 using miScript Target Protectors

    Sources for HCG4 Gene

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