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Aliases for HCG27 Gene

Subcategory (RNA class) for HCG27 Gene

non-coding RNA

Quality Score for this RNA gene is

3

Aliases for HCG27 Gene

  • HLA Complex Group 27 (Non-Protein Coding) 2 3 5
  • BPG299F13.9 BCX101P6.9 BQB115I13.2 3
  • HLA Complex Group 27 2
  • BPG299F13.9 3
  • BQB115I13.2 3
  • BCX101P6.9 3

External Ids for HCG27 Gene

Previous GeneCards Identifiers for HCG27 Gene

  • GC06P031272
  • GC06P031273
  • GC06P031166

Summaries for HCG27 Gene

GeneCards Summary for HCG27 Gene

HCG27 (HLA Complex Group 27 (Non-Protein Coding)) is an RNA Gene, and is affiliated with the non-coding RNA class.

No data available for Entrez Gene Summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for HCG27 Gene

Genomics for HCG27 Gene

Regulatory Elements for HCG27 Gene

Enhancers for HCG27 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH06F031207 1.3 Ensembl ENCODE 18.5 +11.8 11790 3.3 ELF3 ARID4B DMAP1 THRB ZNF48 RARA ZNF766 CREM THAP11 JUNB POU5F1 PSORS1C3 HLA-C HCG27 CCHCR1 ENSG00000272501 ENSG00000229836 ENSG00000271581 HLA-B AGER
GH06F031269 0.8 FANTOM5 ENCODE 16.3 +73.7 73702 4.4 HDGF PKNOX1 ATF1 WRNIP1 ARID4B GLI4 ZNF2 ZNF121 GLIS2 ZNF416 HLA-C PSORS1C3 PPT2 DDX39B LY6G5B TCF19 LSM2 PSORS1C2 ATF6B MICA
GH06F031351 0.2 ENCODE 13.1 +154.2 154198 0.4 POLR2A CBFB HLA-C PSORS1C2 PSORS1C1 PSORS1C3 HCG27 HLA-B MICA CCHCR1 POU5F1 PIR46739
GH06F031137 0.5 ENCODE 12.1 -60.1 -60112 0.2 HDGF PKNOX1 ARNT ARID4B DMAP1 ZNF48 ZNF2 GLIS2 ZNF143 KLF7 PSORS1C1 HCG18 HCG27 ZBTB12 RPP21 PRR3 GTF2H4 DXO PSORS1C2 CDSN
GH06F030826 1.2 FANTOM5 ENCODE 10.1 -368.5 -368480 5.5 HDGF PKNOX1 ARNT CREB3L1 ARID4B SIN3A DMAP1 YY1 SLC30A9 ZNF766 DDR1 VARS2 IER3 LINC00243 HLA-C DDR1-AS1 MIR4640 FLOT1 DPCR1 HCG21
- Elite enhancer/Elite enhancer-gene association Download Table
Download GeneHancer data dump

Enhancers around HCG27 on UCSC Golden Path with GeneCards custom track

Promoters for HCG27 Gene
Ensembl Regulatory Elements (ENSRs) TSS Distance (bp) Size (bp) Binding Sites for Transcription Factors within promoters
ENSR00000487808 240 2401 HDGF PKNOX1 ARNT MLX ARID4B SIN3A DMAP1 ZNF2 YY1 CBX5

Genomic Location for HCG27 Gene

Chromosome:
6
Start:
31,197,760 bp from pter
End:
31,203,968 bp from pter
Size:
6,209 bases
Orientation:
Plus strand

Genomic View for HCG27 Gene

Genes around HCG27 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
HCG27 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for HCG27 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

Proteins for HCG27 Gene

  • Protein details for HCG27 Gene (UniProtKB/TrEMBL)

    Protein Symbol:
    H0YLW2
    Recommended name:
    Protein HCG27
    Protein Accession:
    H0YLW2

    Protein attributes for HCG27 Gene

    Size:
    189 amino acids
    Molecular mass:
    20927 Da
    Quaternary structure:
    No Data Available
  • Protein details for HCG27 Gene (UniProtKB/TrEMBL)

    Protein Symbol:
    H0YMJ2
    Recommended name:
    Protein HCG27
    Protein Accession:
    H0YMJ2

    Protein attributes for HCG27 Gene

    Size:
    163 amino acids
    Molecular mass:
    18059 Da
    Quaternary structure:
    No Data Available

neXtProt entry for HCG27 Gene

Post-translational modifications for HCG27 Gene

No Post-translational modifications

Other Protein References for HCG27 Gene

ENSEMBL proteins:

No data available for DME Specific Peptides for HCG27 Gene

Domains & Families for HCG27 Gene

Protein Domains for HCG27 Gene

InterPro:
ProtoNet:

Graphical View of Domain Structure for InterPro Entry

genes like me logo Genes that share domains with HCG27: view

No data available for Gene Families , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for HCG27 Gene

Function for HCG27 Gene

Phenotypes for HCG27 Gene

genes like me logo Genes that share phenotypes with HCG27: view

Animal Model Products

Inhibitory RNA Products

Clone Products

Flow Cytometry Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for HCG27 Gene

Localization for HCG27 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for HCG27 Gene

Pathways & Interactions for HCG27 Gene

SuperPathways for HCG27 Gene

No Data Available

Interacting Proteins for HCG27 Gene

Gene Ontology (GO) - Biological Process for HCG27 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for HCG27 Gene

Transcripts for HCG27 Gene

mRNA/cDNA for HCG27 Gene

Unigene Clusters for HCG27 Gene

HLA complex group 27 (non-protein coding):
Representative Sequences:

Alternative Splicing Database (ASD) splice patterns (SP) for HCG27 Gene

No ASD Table

Relevant External Links for HCG27 Gene

GeneLoc Exon Structure for
HCG27
ECgene alternative splicing isoforms for
HCG27

Expression for HCG27 Gene

mRNA expression in normal human tissues for HCG27 Gene

mRNA differential expression in normal tissues according to GTEx for HCG27 Gene

This gene is overexpressed in Whole Blood (x26.9).

NURSA nuclear receptor signaling pathways regulating expression of HCG27 Gene:

HCG27

SOURCE GeneReport for Unigene cluster for HCG27 Gene:

Hs.659818
genes like me logo Genes that share expression patterns with HCG27: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners and mRNA Expression by UniProt/SwissProt for HCG27 Gene

Orthologs for HCG27 Gene

Evolution for HCG27 Gene

ENSEMBL:
Gene Tree for HCG27 (if available)
TreeFam:
Gene Tree for HCG27 (if available)

No data available for Orthologs for HCG27 Gene

Paralogs for HCG27 Gene

No data available for Paralogs for HCG27 Gene

Variants for HCG27 Gene

Sequence variations from dbSNP and Humsavar for HCG27 Gene

SNP ID Clin Chr 06 pos Sequence Context AA Info Type
rs10807081 -- 31,201,987(+) GGGTG(G/T)TCAGG intron-variant
rs10947144 -- 31,201,000(+) cagaa(C/G)gtgga intron-variant
rs111304553 -- 31,198,513(+) ACTGC(A/C)ACCCC intron-variant
rs111475307 -- 31,201,446(+) CCTCA(-/T)GTTCT intron-variant
rs111685935 -- 31,204,393(+) AACTT(G/T)TTTTT downstream-variant-500B

Structural Variations from Database of Genomic Variants (DGV) for HCG27 Gene

Variant ID Type Subtype PubMed ID
esv2731791 CNV deletion 23290073
esv2759414 CNV gain+loss 17122850
esv32635 CNV gain+loss 17666407
esv3411275 CNV duplication 20981092
esv3608531 CNV loss 21293372
esv3608532 CNV gain 21293372
esv3608540 CNV loss 21293372
nsv1074389 CNV deletion 25765185
nsv1122126 CNV deletion 24896259
nsv1144137 CNV deletion 24896259
nsv428140 CNV gain+loss 18775914
nsv601264 CNV loss 21841781
nsv601481 CNV loss 21841781

Relevant External Links for HCG27 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
HCG27

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for HCG27 Gene

Disorders for HCG27 Gene

Relevant External Links for HCG27

Genetic Association Database (GAD)
HCG27
Human Genome Epidemiology (HuGE) Navigator
HCG27
Atlas of Genetics and Cytogenetics in Oncology and Haematology:
HCG27

No disorders were found for HCG27 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for HCG27 Gene

Publications for HCG27 Gene

  1. A genome-wide association study for coronary artery disease identifies a novel susceptibility locus in the major histocompatibility complex. (PMID: 22319020) Davies R.W. … McPherson R. (Circ Cardiovasc Genet 2012) 3 46 64
  2. Web-based, participant-driven studies yield novel genetic associations for common traits. (PMID: 20585627) Eriksson N. … Mountain J. (PLoS Genet. 2010) 3 46 64
  3. High-density SNP screening of the major histocompatibility complex in systemic lupus erythematosus demonstrates strong evidence for independent susceptibility regions. (PMID: 19851445) Barcellos L.F. … Criswell L.A. (PLoS Genet. 2009) 3 46 64
  4. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg R.L. … Marra M.A. (Proc. Natl. Acad. Sci. U.S.A. 2002) 2 3 64
  5. Lupus nephritis susceptibility loci in women with systemic lupus erythematosus. (PMID: 24925725) Chung S.A. … Langefeld C.D. (J. Am. Soc. Nephrol. 2014) 3 64

Products for HCG27 Gene

Sources for HCG27 Gene

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