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Aliases for HCG27 Gene

Subcategory (RNA class) for HCG27 Gene

lncRNA

Quality Score for this RNA gene is

3

Aliases for HCG27 Gene

  • HLA Complex Group 27 (Non-Protein Coding) 2 3
  • BPG299F13.9 BCX101P6.9 BQB115I13.2 3
  • HLA Complex Group 27 2
  • BPG299F13.9 3
  • BQB115I13.2 3
  • BCX101P6.9 3

External Ids for HCG27 Gene

ORGUL Members for HCG27 Gene

Summaries for HCG27 Gene

GeneCards Summary for HCG27 Gene

HCG27 (HLA Complex Group 27 (Non-Protein Coding)) is a RNA Gene, and belongs to lncRNA RNA class.

No data available for Entrez Gene Summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for HCG27 Gene

Genomics for HCG27 Gene

Genomic Location for HCG27 Gene

Start:
31,197,760 bp from pter
End:
31,203,968 bp from pter
Size:
6,209 bases
Orientation:
Plus strand

Genomic View for HCG27 Gene

UCSC Golden Path with GeneCards custom track
Cytogenetic band:
Genomic Location for HCG27 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

Regulatory Elements for HCG27 Gene

Proteins for HCG27 Gene

  • Protein details for HCG27 Gene (UniProtKB/TrEMBL)

    Protein Symbol:
    H0YLW2-H0YLW2
    Recommended name:
    Protein HCG27
    Protein Accession:
    H0YLW2
    Secondary Accessions:

    Protein attributes for HCG27 Gene

    Size:
    189 amino acids
    Molecular mass:
    20927 Da
    Quaternary structure:
    No Data Available
  • Protein details for HCG27 Gene (UniProtKB/TrEMBL)

    Protein Symbol:
    H0YMJ2-H0YMJ2
    Recommended name:
    Protein HCG27
    Protein Accession:
    H0YMJ2
    Secondary Accessions:

    Protein attributes for HCG27 Gene

    Size:
    163 amino acids
    Molecular mass:
    18059 Da
    Quaternary structure:
    No Data Available

neXtProt entry for HCG27 Gene

Proteomics data for HCG27 Gene at MOPED

Post-translational modifications for HCG27 Gene

No Post-translational modifications

Other Protein References for HCG27 Gene

ENSEMBL proteins:

No data available for DME Specific Peptides for HCG27 Gene

Domains for HCG27 Gene

Gene Families for HCG27 Gene

HGNC:
  • LNCRNA :Long non-coding RNAs

Protein Domains for HCG27 Gene

ProtoNet:
genes like me logo Genes that share domains with HCG27: view

No data available for UniProtKB/Swiss-Prot for HCG27 Gene

Function for HCG27 Gene

Phenotypes for HCG27 Gene

GenomeRNAi human phenotypes for HCG27:
genes like me logo Genes that share phenotypes with HCG27: view

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Animal Models , miRNA , Transcription Factor Targeting and HOMER Transcription for HCG27 Gene

Localization for HCG27 Gene

No data available for Gene Ontology (GO) - Cellular Components for HCG27 Gene

Pathways for HCG27 Gene

SuperPathways for HCG27 Gene

No Data Available

Interacting Proteins for HCG27 Gene

Gene Ontology (GO) - Biological Process for HCG27 Gene

None

No data available for Pathways by source for HCG27 Gene

Transcripts for HCG27 Gene

mRNA/cDNA for HCG27 Gene

(6) Additional mRNA sequences :
(15) Selected AceView cDNA sequences:
(4) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Unigene Clusters for HCG27 Gene

HLA complex group 27 (non-protein coding):
Representative Sequences:

Alternative Splicing Database (ASD) splice patterns (SP) for HCG27 Gene

No ASD Table

Relevant External Links for HCG27 Gene

GeneLoc Exon Structure for
HCG27
ECgene alternative splicing isoforms for
HCG27

Expression for HCG27 Gene

mRNA expression in normal human tissues for HCG27 Gene

mRNA expression in embryonic tissues and stem cells from LifeMap Discovery

mRNA differential expression in normal tissues according to GTEx for HCG27 Gene

This gene is overexpressed in Whole Blood (26.9).

SOURCE GeneReport for Unigene cluster for HCG27 Gene Hs.659818

genes like me logo Genes that share expressions with HCG27: view

Orthologs for HCG27 Gene

Evolution for HCG27 Gene

ENSEMBL:
Gene Tree for HCG27 (if available)
TreeFam:
Gene Tree for HCG27 (if available)

No data available for Orthologs for HCG27 Gene

Paralogs for HCG27 Gene

genes like me logo Genes that share paralogs with HCG27: view

No data available for Paralogs for HCG27 Gene

Variants for HCG27 Gene

Sequence variations from dbSNP and Humsavar for HCG27 Gene

SNP ID Clin Chr 06 pos Sequence Context AA Info Type MAF
rs395818 -- 31,198,922(-) acagg(C/T)atgag intron-variant
rs886389 -- 31,199,110(-) CTGAA(A/C)CTCAA intron-variant
rs1135811 -- 31,203,821(+) AAGAC(C/T)CCCAT nc-transcript-variant
rs1634704 -- 31,196,431(-) gtgga(A/C)gagaa upstream-variant-2KB
rs1793897 -- 31,203,156(-) ATTTT(C/T)TTTTC nc-transcript-variant

Structural Variations from Database of Genomic Variants (DGV) for HCG27 Gene

Variant ID Type Subtype PubMed ID
esv2731791 CNV Deletion 23290073
dgv1918e1 CNV Complex 17122850
dgv1919e1 CNV Complex 17122850
nsv428140 CNV Gain+Loss 18775914
esv690 CNV CNV 17122850
esv32635 CNV Gain+Loss 17666407

Relevant External Links for HCG27 Gene

HapMap Linkage Disequilibrium report
HCG27

Disorders for HCG27 Gene

Relevant External Links for HCG27

Genetic Association Database (GAD)
HCG27
Human Genome Epidemiology (HuGE) Navigator
HCG27
genes like me logo Genes that share disorders with HCG27: view

No data available for UniProtKB/Swiss-Prot for HCG27 Gene

Publications for HCG27 Gene

  1. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg R.L. … Marra M.A. (Proc. Natl. Acad. Sci. U.S.A. 2002) 2 3
  2. High-density SNP screening of the major histocompatibility complex in systemic lupus erythematosus demonstrates strong evidence for independent susceptibility regions. (PMID: 19851445) Barcellos L.F. … Criswell L.A. (PLoS Genet. 2009) 3 49
  3. Web-based, participant-driven studies yield novel genetic associations for common traits. (PMID: 20585627) Eriksson N. … Mountain J. (PLoS Genet. 2010) 3 49
  4. A genome-wide association study for coronary artery disease identifies a novel susceptibility locus in the major histocompatibility complex. (PMID: 22319020) Davies R.W. … McPherson R. (Circ Cardiovasc Genet 2012) 3 49
  5. Genome-wide association study for levels of total serum IgE identifies HLA-C in a Japanese population. (PMID: 24324648) Yatagai Y. … Hizawa N. (PLoS ONE 2013) 3

Products for HCG27 Gene

  • QIAGEN qRT-PCR Assays for microRNAs that regulate HCG27
    • QuantiTect SYBR Green Assays in human,mouse,rat
    • Pre-validated RT² qPCR Primer Assay in human,mouse,rat
    • QuantiFast Probe-based Assays in human,mouse,rat
    • Predesigned siRNA for gene silencing in human,mouse,rat for HCG27
    • Block miRNA regulation of HCG27 using miScript Target Protectors

    Sources for HCG27 Gene

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