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Aliases for HCG26 Gene

Subcategory (RNA class) for HCG26 Gene

lncRNA

Quality Score for this RNA gene is

2

Aliases for HCG26 Gene

  • HLA Complex Group 26 (Non-Protein Coding) 2 3
  • MHC Class I MRNA Fragment 3.8-1 3
  • Non-Protein Coding RNA 191 2
  • HLA Complex Group 26 2
  • BPG181B23.4 3
  • NCRNA00191 3
  • BCX205D4.4 3
  • 3.8-1 3

External Ids for HCG26 Gene

ORGUL Members for HCG26 Gene

Summaries for HCG26 Gene

GeneCards Summary for HCG26 Gene

HCG26 (HLA Complex Group 26 (Non-Protein Coding)) is a RNA Gene, and belongs to lncRNA RNA class.

No data available for Entrez Gene Summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for HCG26 Gene

Genomics for HCG26 Gene

Genomic Location for HCG26 Gene

Start:
31,471,229 bp from pter
End:
31,472,408 bp from pter
Size:
1,180 bases
Orientation:
Plus strand

Genomic View for HCG26 Gene

UCSC Golden Path with GeneCards custom track
Cytogenetic band:
Genomic Location for HCG26 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

Regulatory Elements for HCG26 Gene

Proteins for HCG26 Gene

Post-translational modifications for HCG26 Gene

No Post-translational modifications

No data available for DME Specific Peptides for HCG26 Gene

Domains for HCG26 Gene

Gene Families for HCG26 Gene

HGNC:
  • LNCRNA :Long non-coding RNAs
genes like me logo Genes that share domains with HCG26: view

No data available for Protein Domains and UniProtKB/Swiss-Prot for HCG26 Gene

Function for HCG26 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Animal Models , miRNA , Transcription Factor Targeting and HOMER Transcription for HCG26 Gene

Localization for HCG26 Gene

No data available for Gene Ontology (GO) - Cellular Components for HCG26 Gene

Pathways for HCG26 Gene

SuperPathways for HCG26 Gene

No Data Available

Interacting Proteins for HCG26 Gene

Gene Ontology (GO) - Biological Process for HCG26 Gene

None

No data available for Pathways by source for HCG26 Gene

Transcripts for HCG26 Gene

mRNA/cDNA for HCG26 Gene

(2) Additional mRNA sequences :

Unigene Clusters for HCG26 Gene

HLA complex group 26 (non-protein coding):
Representative Sequences:

Alternative Splicing Database (ASD) splice patterns (SP) for HCG26 Gene

No ASD Table

Relevant External Links for HCG26 Gene

GeneLoc Exon Structure for
HCG26
ECgene alternative splicing isoforms for
HCG26

Expression for HCG26 Gene

mRNA expression in normal human tissues for HCG26 Gene

SOURCE GeneReport for Unigene cluster for HCG26 Gene Hs.132807

genes like me logo Genes that share expressions with HCG26: view

Orthologs for HCG26 Gene

No data available for Orthologs and Evolution for HCG26 Gene

Paralogs for HCG26 Gene

No data available for Paralogs for HCG26 Gene

Variants for HCG26 Gene

Sequence variations from dbSNP and Humsavar for HCG26 Gene

SNP ID Clin Chr 06 pos Sequence Context AA Info Type MAF
rs14597 -- 31,472,237(+) CGTAT(A/C)ATTTA nc-transcript-variant
rs1055566 -- 31,472,210(+) GTCCT(C/T)TTCAT nc-transcript-variant
rs1055568 -- 31,472,229(+) GTTAT(C/T)AGCGT nc-transcript-variant
rs1055569 -- 31,472,305(+) AAAAT(C/T)TACAA nc-transcript-variant
rs2244839 -- 31,470,591(+) ATGGC(A/G)GGATG upstream-variant-2KB

Structural Variations from Database of Genomic Variants (DGV) for HCG26 Gene

Variant ID Type Subtype PubMed ID
nsv428140 CNV Gain+Loss 18775914
esv690 CNV CNV 17122850
dgv1042e201 CNV Deletion 23290073
dgv1921e1 CNV Complex 17122850
esv33563 CNV Gain+Loss 17666407
nsv517441 CNV Gain+Loss 19592680
dgv213e55 CNV Gain 17911159
dgv214e55 CNV Gain 17911159
dgv1926e1 CNV Complex 17122850
essv13266 CNV CNV 17122850
esv34063 CNV Loss 18971310
esv26480 CNV Loss 19812545
dgv6571n71 CNV Loss 21882294
dgv747n27 CNV Loss 19166990
dgv1098e199 CNV Deletion 23128226
esv2731822 CNV Deletion 23290073
esv3160 CNV Duplication 18987735
nsv511868 CNV Loss 21212237
nsv513736 CNV Insertion 21212237
esv2432528 CNV Deletion 19546169
nsv435829 CNV Deletion 17901297
nsv10820 CNV Gain+Loss 18304495
dgv6574n71 CNV Gain 21882294
dgv6575n71 CNV Gain+Loss 21882294
nsv823497 CNV Loss 20364138
dgv215e55 CNV Loss 17911159
esv29968 CNV Gain 17803354
nsv441990 CNV CNV 18776908
nsv462854 CNV Gain 19166990
nsv818409 CNV Loss 17921354
esv2752123 CNV Gain 17911159
dgv6577n71 CNV Loss 21882294
esv34118 CNV Loss 18971310
nsv5246 CNV Loss 18451855
esv269295 CNV Insertion 20981092
esv274516 CNV Insertion 20981092
esv1671758 CNV Insertion 17803354
nsv511312 CNV Loss 21212237
dgv6579n71 CNV Loss 21882294

Relevant External Links for HCG26 Gene

HapMap Linkage Disequilibrium report
HCG26

Disorders for HCG26 Gene

Relevant External Links for HCG26

Genetic Association Database (GAD)
HCG26
genes like me logo Genes that share disorders with HCG26: view

No data available for UniProtKB/Swiss-Prot for HCG26 Gene

Publications for HCG26 Gene

  1. Genome-wide screen for metabolic syndrome susceptibility Loci reveals strong lipid gene contribution but no evidence for common genetic basis for clustering of metabolic syndrome traits. (PMID: 22399527) Kristiansson K. … Salomaa V. (Circ Cardiovasc Genet 2012) 3 49
  2. Meta-analysis identifies multiple loci associated with kidney function-related traits in east Asian populations. (PMID: 22797727) Okada Y. … Tanaka T. (Nat. Genet. 2012) 3
  3. Genome-wide association scan in north Indians reveals three novel HLA-independent risk loci for ulcerative colitis. (PMID: 24837172) Juyal G. … Thelma B.K. (Gut 2015) 3
  4. Risk alleles for multiple sclerosis identified by a genomewide study. (PMID: 17660530) . … Hauser S.L. (N. Engl. J. Med. 2007) 49
  5. Association of systemic lupus erythematosus with C8orf13-BLK and ITGAM-ITGAX. (PMID: 18204098) Hom G. … Behrens T.W. (N. Engl. J. Med. 2008) 49

Products for HCG26 Gene

  • QIAGEN qRT-PCR Assays for microRNAs that regulate HCG26
    • QuantiTect SYBR Green Assays in human,mouse,rat
    • Pre-validated RT² qPCR Primer Assay in human,mouse,rat
    • QuantiFast Probe-based Assays in human,mouse,rat
    • Predesigned siRNA for gene silencing in human,mouse,rat for HCG26
    • Block miRNA regulation of HCG26 using miScript Target Protectors

    Sources for HCG26 Gene

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