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Aliases for HCG26 Gene

Subcategory (RNA class) for HCG26 Gene

lncRNA

Quality Score for this RNA gene is

2

Aliases for HCG26 Gene

  • HLA Complex Group 26 (Non-Protein Coding) 2 3
  • MHC Class I MRNA Fragment 3.8-1 3
  • Non-Protein Coding RNA 191 2
  • HLA Complex Group 26 2
  • BPG181B23.4 3
  • NCRNA00191 3
  • BCX205D4.4 3
  • 3.8-1 3

External Ids for HCG26 Gene

ORGUL Members for HCG26 Gene

Previous GeneCards Identifiers for HCG26 Gene

  • GC00U915702
  • GC06U900756
  • GC06P031547
  • GC06P031548
  • GC06P031226

Summaries for HCG26 Gene

GeneCards Summary for HCG26 Gene

HCG26 (HLA Complex Group 26 (Non-Protein Coding)) is an RNA Gene, and is affiliated with the lncRNA class.

No data available for Entrez Gene Summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for HCG26 Gene

Genomics for HCG26 Gene

Regulatory Elements for HCG26 Gene

Genomic Location for HCG26 Gene

Chromosome:
6
Start:
31,471,229 bp from pter
End:
31,472,408 bp from pter
Size:
1,180 bases
Orientation:
Plus strand

Genomic View for HCG26 Gene

Genes around HCG26 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
HCG26 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for HCG26 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

Proteins for HCG26 Gene

Post-translational modifications for HCG26 Gene

No Post-translational modifications

No data available for DME Specific Peptides for HCG26 Gene

Domains & Families for HCG26 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for HCG26 Gene

Function for HCG26 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for HCG26 Gene

Localization for HCG26 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for HCG26 Gene

Pathways & Interactions for HCG26 Gene

SuperPathways for HCG26 Gene

No Data Available

Interacting Proteins for HCG26 Gene

Gene Ontology (GO) - Biological Process for HCG26 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for HCG26 Gene

Drugs & Compounds for HCG26 Gene

No Compound Related Data Available

Transcripts for HCG26 Gene

mRNA/cDNA for HCG26 Gene

(2) Additional mRNA sequences :

Unigene Clusters for HCG26 Gene

HLA complex group 26 (non-protein coding):
Representative Sequences:

Alternative Splicing Database (ASD) splice patterns (SP) for HCG26 Gene

No ASD Table

Relevant External Links for HCG26 Gene

GeneLoc Exon Structure for
HCG26
ECgene alternative splicing isoforms for
HCG26

Expression for HCG26 Gene

mRNA expression in normal human tissues for HCG26 Gene

SOURCE GeneReport for Unigene cluster for HCG26 Gene Hs.132807

genes like me logo Genes that share expression patterns with HCG26: view

In Situ Assay Products

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , mRNA Expression by UniProt/SwissProt and Protein tissue co-expression partners for HCG26 Gene

Orthologs for HCG26 Gene

No data available for Orthologs and Evolution for HCG26 Gene

Paralogs for HCG26 Gene

No data available for Paralogs for HCG26 Gene

Variants for HCG26 Gene

Sequence variations from dbSNP and Humsavar for HCG26 Gene

SNP ID Clin Chr 06 pos Sequence Context AA Info Type
rs14597 -- 31,472,237(+) CGTAT(A/C)ATTTA nc-transcript-variant
rs1055566 -- 31,472,210(+) GTCCT(C/T)TTCAT nc-transcript-variant
rs1055568 -- 31,472,229(+) GTTAT(C/T)AGCGT nc-transcript-variant
rs1055569 -- 31,472,305(+) AAAAT(C/T)TACAA nc-transcript-variant
rs2518031 -- 31,469,350(-) TGGGT(C/G)TAGGA upstream-variant-2KB

Structural Variations from Database of Genomic Variants (DGV) for HCG26 Gene

Variant ID Type Subtype PubMed ID
nsv428140 CNV Gain+Loss 18775914
esv690 CNV CNV 17122850
dgv1042e201 CNV Deletion 23290073
dgv1921e1 CNV Complex 17122850
esv33563 CNV Gain+Loss 17666407
nsv517441 CNV Gain+Loss 19592680
dgv213e55 CNV Gain 17911159
dgv214e55 CNV Gain 17911159
dgv1926e1 CNV Complex 17122850
essv13266 CNV CNV 17122850
esv34063 CNV Loss 18971310
esv26480 CNV Loss 19812545
dgv6571n71 CNV Loss 21882294
dgv747n27 CNV Loss 19166990
dgv1098e199 CNV Deletion 23128226
esv2731822 CNV Deletion 23290073
esv3160 CNV Duplication 18987735
nsv511868 CNV Loss 21212237
nsv513736 CNV Insertion 21212237
esv2432528 CNV Deletion 19546169
nsv435829 CNV Deletion 17901297
nsv10820 CNV Gain+Loss 18304495
dgv6574n71 CNV Gain 21882294
dgv6575n71 CNV Gain+Loss 21882294
nsv823497 CNV Loss 20364138
dgv215e55 CNV Loss 17911159
esv29968 CNV Gain 17803354
nsv441990 CNV CNV 18776908
nsv462854 CNV Gain 19166990
nsv818409 CNV Loss 17921354
esv2752123 CNV Gain 17911159
dgv6577n71 CNV Loss 21882294
esv34118 CNV Loss 18971310
nsv5246 CNV Loss 18451855
esv269295 CNV Insertion 20981092
esv274516 CNV Insertion 20981092
esv1671758 CNV Insertion 17803354
nsv511312 CNV Loss 21212237
dgv6579n71 CNV Loss 21882294

Relevant External Links for HCG26 Gene

HapMap Linkage Disequilibrium report
HCG26

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for HCG26 Gene

Disorders for HCG26 Gene

Relevant External Links for HCG26

Genetic Association Database (GAD)
HCG26
Atlas of Genetics and Cytogenetics in Oncology and Haematology:
HCG26

No disorders were found for HCG26 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for HCG26 Gene

Publications for HCG26 Gene

  1. Genome-wide screen for metabolic syndrome susceptibility Loci reveals strong lipid gene contribution but no evidence for common genetic basis for clustering of metabolic syndrome traits. (PMID: 22399527) Kristiansson K. … Salomaa V. (Circ Cardiovasc Genet 2012) 3 48 67
  2. Genome-wide association scan in north Indians reveals three novel HLA-independent risk loci for ulcerative colitis. (PMID: 24837172) Juyal G. … Thelma B.K. (Gut 2015) 3
  3. Clozapine-induced agranulocytosis is associated with rare HLA-DQB1 and HLA-B alleles. (PMID: 25187353) Goldstein J.I. … Sullivan P.F. (Nat Commun 2014) 3
  4. Meta-analysis identifies multiple loci associated with kidney function-related traits in east Asian populations. (PMID: 22797727) Okada Y. … Tanaka T. (Nat. Genet. 2012) 3
  5. Rapid evolution of major histocompatibility complex class I genes in primates generates new disease alleles in humans via hitchhiking diversity. (PMID: 16702430) Shiina T. … Bahram S. (Genetics 2006) 3

Products for HCG26 Gene

Sources for HCG26 Gene

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