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Aliases for HCG25 Gene

Subcategory (RNA class) for HCG25 Gene

non-coding RNA

Quality Score for this RNA gene is

3

Aliases for HCG25 Gene

  • HLA Complex Group 25 (Non-Protein Coding) 2 3 5
  • HLA Complex Group 25 2
  • DJ1033B10.16 3

External Ids for HCG25 Gene

Previous GeneCards Identifiers for HCG25 Gene

  • GC00U915694
  • GC06U900752
  • GC06P033218
  • GC06P033251
  • GC06P033254
  • GC06P033260
  • GC06P033264
  • GC06P033266

Summaries for HCG25 Gene

GeneCards Summary for HCG25 Gene

HCG25 (HLA Complex Group 25 (Non-Protein Coding)) is an RNA Gene, and is affiliated with the non-coding RNA class.

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for HCG25 Gene

Genomics for HCG25 Gene

Regulatory Elements for HCG25 Gene

Enhancers for HCG25 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH06G033016 1.9 FANTOM5 Ensembl ENCODE dbSUPER 36 -230.7 -230667 5.0 PKNOX1 ZNF493 ARID4B SIN3A ZNF2 YY1 ZNF121 GLIS2 ZNF143 KLF7 HCG25 HLA-DQA2 PPT2 HLA-DPB1 HLA-DPA1 RXRB HLA-DQB2 HLA-DMA COL11A2 BRD2
GH06G033409 1.4 ENCODE dbSUPER 46 +161.5 161528 4.1 MLX CREB3L1 AGO1 ZFP64 DMAP1 SLC30A9 ZNF143 ZNF263 SP3 NFYC HCG25 RING1 VPS52 BRD2 RXRB DAXX LEMD2 WDR46 SYNGAP1 COL11A2
GH06G032965 1.5 ENCODE dbSUPER 36.7 -278.9 -278866 10.4 CREB3L1 AGO1 ZFP64 DMAP1 YY1 SLC30A9 ZNF143 ZNF548 ZNF263 SP3 BRD2 RING1 RXRB VPS52 LEMD2 PPT2 PRRT1 ATF6B HLA-DMA DAXX
GH06G034102 0.9 dbSUPER 59 +854.1 854079 2.4 CBX3 ZNF473 ZSCAN4 ZNF493 YBX1 PLRG1 ZNF302 EGR1 ZNF354C ZNF416 RING1 HCG25 VPS52 RXRB LEMD2 DAXX WDR46 SYNGAP1 ITPR3 RGL2
GH06G033430 1.5 FANTOM5 ENCODE dbSUPER 30.8 +182.9 182886 4.5 HDGF ATF1 FOXA2 ARID4B SIN3A ZNF48 GLIS2 ELK1 ZNF143 FOS RING1 HCG25 DAXX ZBTB9 SYNGAP1 LEMD2 VPS52 SMIM29 PHF1 KIFC1
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around HCG25 on UCSC Golden Path with GeneCards custom track

Promoters for HCG25 Gene
Ensembl Regulatory Elements (ENSRs) TSS Distance (bp) Size (bp) Binding Sites for Transcription Factors within promoters
ENSR00000320340 -134 801 HDGF PKNOX1 FOXA2 CREB3L1 ARNT AGO1 SIN3A ARID4B DMAP1 ZNF2
ENSR00000195770 -1134 401 MLX ARNT ARID4B ZNF2 ZNF48 ZNF143 REST PPARG ZNF592 KAT8

Genomic Location for HCG25 Gene

Chromosome:
6
Start:
33,249,534 bp from pter
End:
33,254,989 bp from pter
Size:
5,456 bases
Orientation:
Plus strand

Genomic View for HCG25 Gene

Genes around HCG25 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
HCG25 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for HCG25 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

Proteins for HCG25 Gene

Post-translational modifications for HCG25 Gene

No Post-translational modifications

No data available for DME Specific Peptides for HCG25 Gene

Domains & Families for HCG25 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for HCG25 Gene

Function for HCG25 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for HCG25 Gene

Localization for HCG25 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for HCG25 Gene

Pathways & Interactions for HCG25 Gene

SuperPathways for HCG25 Gene

No Data Available

Interacting Proteins for HCG25 Gene

Gene Ontology (GO) - Biological Process for HCG25 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for HCG25 Gene

Drugs & Compounds for HCG25 Gene

No Compound Related Data Available

Transcripts for HCG25 Gene

mRNA/cDNA for HCG25 Gene

(1) Additional mRNA sequences :
(4) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Unigene Clusters for HCG25 Gene

HLA complex group 25 (non-protein coding):
Representative Sequences:

Alternative Splicing Database (ASD) splice patterns (SP) for HCG25 Gene

No ASD Table

Relevant External Links for HCG25 Gene

GeneLoc Exon Structure for
HCG25
ECgene alternative splicing isoforms for
HCG25

Expression for HCG25 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for HCG25 Gene

NURSA nuclear receptor signaling pathways regulating expression of HCG25 Gene:

HCG25

SOURCE GeneReport for Unigene cluster for HCG25 Gene:

Hs.675862
genes like me logo Genes that share expression patterns with HCG25: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for HCG25 Gene

Orthologs for HCG25 Gene

Evolution for HCG25 Gene

ENSEMBL:
Gene Tree for HCG25 (if available)
TreeFam:
Gene Tree for HCG25 (if available)

No data available for Orthologs for HCG25 Gene

Paralogs for HCG25 Gene

No data available for Paralogs for HCG25 Gene

Variants for HCG25 Gene

Sequence variations from dbSNP and Humsavar for HCG25 Gene

SNP ID Clin Chr 06 pos Sequence Context AA Info Type
rs1000779401 -- 33,250,292(+) ACTAA(A/G)TATTT intron-variant, utr-variant-3-prime
rs1000816719 -- 33,249,533(+) CAATT(-/A)AGGAG upstream-variant-2KB
rs1001982582 -- 33,249,246(+) GATCT(A/G)GGCAA upstream-variant-2KB
rs1002011 -- 33,250,460(+) GCTGA(A/G)GAGGC intron-variant, utr-variant-3-prime
rs1002092914 -- 33,249,449(+) TCTCG(C/G)ATATG upstream-variant-2KB

Structural Variations from Database of Genomic Variants (DGV) for HCG25 Gene

Variant ID Type Subtype PubMed ID
dgv10609n54 CNV loss 21841781
nsv1073969 CNV deletion 25765185
nsv1112900 CNV deletion 24896259
nsv1119076 CNV deletion 24896259
nsv830634 CNV loss 17160897

Relevant External Links for HCG25 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
HCG25

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for HCG25 Gene

Disorders for HCG25 Gene

Relevant External Links for HCG25

Atlas of Genetics and Cytogenetics in Oncology and Haematology:
HCG25

No disorders were found for HCG25 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for HCG25 Gene

Publications for HCG25 Gene

No publications were found for HCG25 Gene.

Products for HCG25 Gene

Sources for HCG25 Gene

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