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Aliases for HCG25 Gene

Subcategory (RNA class) for HCG25 Gene

non-coding RNA

Quality Score for this RNA gene is

3

Aliases for HCG25 Gene

  • HLA Complex Group 25 (Non-Protein Coding) 2 3 5
  • HLA Complex Group 25 2
  • DJ1033B10.16 3

External Ids for HCG25 Gene

Previous GeneCards Identifiers for HCG25 Gene

  • GC00U915694
  • GC06U900752
  • GC06P033218
  • GC06P033251
  • GC06P033254
  • GC06P033260
  • GC06P033264

Summaries for HCG25 Gene

GeneCards Summary for HCG25 Gene

HCG25 (HLA Complex Group 25 (Non-Protein Coding)) is an RNA Gene, and is affiliated with the non-coding RNA class.

No data available for Entrez Gene Summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for HCG25 Gene

Genomics for HCG25 Gene

Regulatory Elements for HCG25 Gene

Enhancers for HCG25 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH06F033409 0.2 ENCODE 77.4 +161.5 161528 4.1 CREB3L1 MLX ZFP64 DMAP1 SLC30A9 ZNF263 SP3 NFYC MEF2D ZNF610 BRD2 VPS52 HCG25 RING1 LEMD2 RXRB DAXX MIR6873 ITPR3 MIR5004
GH06F033016 1.8 FANTOM5 Ensembl ENCODE 67.2 -230.7 -230667 5.0 PKNOX1 ZNF493 ARID4B SIN3A ZNF2 YY1 ZNF121 GLIS2 ZNF143 KLF7 HCG25 BRD2 VPS52 LEMD2 ATF6B RXRB RING1 PPT2 MIR6873 DAXX
GH06F033183 0.5 Ensembl ENCODE 59.4 -65.9 -65934 1.2 CBX3 ZNF493 ZFP64 NFRKB ZBTB40 YY1 CBX5 ZNF138 ETV6 ZNF202 BRD2 VPS52 HCG25 LEMD2 RING1 MIR6873 RXRB DAXX RPS18 HLA-DPB1
GH06F032965 1.2 ENCODE 46.4 -278.9 -278866 10.4 CREB3L1 ZFP64 DMAP1 YY1 SLC30A9 ZNF143 ZNF548 ZNF263 SP3 NFYC BRD2 VPS52 ATF6B LEMD2 RING1 RXRB DAXX MIR6873 HCG25 PPT2
GH06F033203 0.2 ENCODE 33.5 -43.1 -43131 5.8 HDGF PKNOX1 CREB3L1 ZFP64 ARID4B SIN3A DMAP1 ZNF2 YY1 SLC30A9 BRD2 RING1 VPS52 RXRB LEMD2 MIR6873 DAXX HCG25 RGL2 MIR5004
- Elite enhancer/Elite enhancer-gene association Download Table
Download GeneHancer data dump

Enhancers around HCG25 on UCSC Golden Path with GeneCards custom track

Promoters for HCG25 Gene
Ensembl Regulatory Elements (ENSRs) TSS Distance (bp) Size (bp) Binding Sites for Transcription Factors within promoters
ENSR00000488114 -534 2001 HDGF PKNOX1 ARNT CREB3L1 MLX SIN3A ARID4B DMAP1 ZNF2 YY1

Genomic Location for HCG25 Gene

Chromosome:
6
Start:
33,249,534 bp from pter
End:
33,254,989 bp from pter
Size:
5,456 bases
Orientation:
Plus strand

Genomic View for HCG25 Gene

Genes around HCG25 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
HCG25 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for HCG25 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

Proteins for HCG25 Gene

Post-translational modifications for HCG25 Gene

No Post-translational modifications

No data available for DME Specific Peptides for HCG25 Gene

Domains & Families for HCG25 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for HCG25 Gene

Function for HCG25 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for HCG25 Gene

Localization for HCG25 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for HCG25 Gene

Pathways & Interactions for HCG25 Gene

SuperPathways for HCG25 Gene

No Data Available

Interacting Proteins for HCG25 Gene

Gene Ontology (GO) - Biological Process for HCG25 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for HCG25 Gene

Transcripts for HCG25 Gene

mRNA/cDNA for HCG25 Gene

(1) Additional mRNA sequences :
(4) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Unigene Clusters for HCG25 Gene

HLA complex group 25 (non-protein coding):
Representative Sequences:

Alternative Splicing Database (ASD) splice patterns (SP) for HCG25 Gene

No ASD Table

Relevant External Links for HCG25 Gene

GeneLoc Exon Structure for
HCG25
ECgene alternative splicing isoforms for
HCG25

Expression for HCG25 Gene

mRNA expression in normal human tissues for HCG25 Gene

NURSA nuclear receptor signaling pathways regulating expression of HCG25 Gene:

HCG25

SOURCE GeneReport for Unigene cluster for HCG25 Gene:

Hs.675862
genes like me logo Genes that share expression patterns with HCG25: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners and mRNA Expression by UniProt/SwissProt for HCG25 Gene

Orthologs for HCG25 Gene

Evolution for HCG25 Gene

ENSEMBL:
Gene Tree for HCG25 (if available)
TreeFam:
Gene Tree for HCG25 (if available)

No data available for Orthologs for HCG25 Gene

Paralogs for HCG25 Gene

No data available for Paralogs for HCG25 Gene

Variants for HCG25 Gene

Sequence variations from dbSNP and Humsavar for HCG25 Gene

SNP ID Clin Chr 06 pos Sequence Context AA Info Type
rs1002011 -- 33,250,460(+) GCTGA(A/G)GAGGC intron-variant, utr-variant-3-prime
rs1004001 -- 33,249,224(-) GTTGC(C/T)CCGGG upstream-variant-2KB
rs105445 -- 33,249,212(-) TTACC(C/G)CGCCT upstream-variant-2KB
rs107860 -- 33,252,583(-) gagac(A/G)gagtc intron-variant
rs107861 -- 33,251,091(-) gctgg(C/G)attac intron-variant

Structural Variations from Database of Genomic Variants (DGV) for HCG25 Gene

Variant ID Type Subtype PubMed ID
dgv10609n54 CNV loss 21841781
nsv1073969 CNV deletion 25765185
nsv1112900 CNV deletion 24896259
nsv1119076 CNV deletion 24896259
nsv830634 CNV loss 17160897

Relevant External Links for HCG25 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
HCG25

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for HCG25 Gene

Disorders for HCG25 Gene

Relevant External Links for HCG25

Atlas of Genetics and Cytogenetics in Oncology and Haematology:
HCG25

No disorders were found for HCG25 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for HCG25 Gene

Publications for HCG25 Gene

No publications were found for HCG25 Gene.

Products for HCG25 Gene

Sources for HCG25 Gene

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