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Aliases for HCG25 Gene

Subcategory (RNA class) for HCG25 Gene

non-coding RNA

Quality Score for this RNA gene is

3

Aliases for HCG25 Gene

  • HLA Complex Group 25 (Non-Protein Coding) 2 3 5
  • HLA Complex Group 25 2
  • DJ1033B10.16 3

External Ids for HCG25 Gene

Previous GeneCards Identifiers for HCG25 Gene

  • GC00U915694
  • GC06U900752
  • GC06P033218
  • GC06P033251
  • GC06P033254
  • GC06P033260
  • GC06P033264
  • GC06P033266
  • GC06P033268

Summaries for HCG25 Gene

GeneCards Summary for HCG25 Gene

HCG25 (HLA Complex Group 25 (Non-Protein Coding)) is an RNA Gene, and is affiliated with the non-coding RNA class.

Additional gene information for HCG25 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for HCG25 Gene

Genomics for HCG25 Gene

Regulatory Elements for HCG25 Gene

Enhancers for HCG25 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH06H032965 1.5 ENCODE dbSUPER 109.2 -278.9 -278866 10.4 ZFP64 DMAP1 YY1 SLC30A9 ZNF143 ZNF548 SP3 NFYC ZC3H11A PPARGC1A BRD2 LEMD2 VPS52 RXRB ATF6B HCG25 RING1 DAXX WDR46 PPT2
GH06H034233 1.7 Ensembl ENCODE dbSUPER 44.2 +992.7 992723 17.1 MLX ZFP64 DMAP1 YY1 SLC30A9 ZNF143 SP3 NFYC ZC3H11A MEF2D LEMD2 VPS52 TAF11 WDR46 HCG25 DAXX RPS10 RGL2 ITPR3 ZBTB22
GH06H032633 1.8 FANTOM5 Ensembl ENCODE dbSUPER 39.7 -612.5 -612530 7.2 HDGF FEZF1 GLI4 ZNF2 ZNF121 GLIS2 ZNF416 ZNF143 ATF7 RUNX3 HLA-DQA1 HLA-DQB1 HLA-DQA2 HLA-DRB1 HLA-DQB2 HLA-DRB5 PPT2 HLA-DRB6 HCG25 VPS52
GH06H034072 0.9 dbSUPER 78.7 +825.1 825077 4 ZNF473 ZNF493 YBX1 PLRG1 ZNF23 ZNF416 ZNF207 EGR2 ZNF202 ZNF488 TAF11 LEMD2 HCG25 RING1 DAXX VPS52 RXRB WDR46 RGL2 RPS10
GH06H033203 1.2 ENCODE 51.4 -43.1 -43131 5.8 HDGF PKNOX1 ARID4B SIN3A DMAP1 ZNF2 YY1 SLC30A9 ZNF766 CBX5 BRD2 LEMD2 VPS52 RXRB RING1 HCG25 DAXX WDR46 RGL2 ITPR3
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around HCG25 on UCSC Golden Path with GeneCards custom track

Promoters for HCG25 Gene
Ensembl Regulatory Elements (ENSRs) TSS Distance (bp) Size (bp) Binding Sites for Transcription Factors within promoters
ENSR00000320340 -134 801 HDGF PKNOX1 FOXA2 ARNT ARID4B DMAP1 ZNF2 YY1 SLC30A9 ZNF143
ENSR00000195770 -1134 401 MLX ARNT ARID4B ZNF2 ZNF143 REST PPARG ZNF592 KAT8 GLIS1

Genomic Locations for HCG25 Gene

Genomic Locations for HCG25 Gene
chr6:33,249,534-33,254,989
(GRCh38/hg38)
Size:
5,456 bases
Orientation:
Plus strand
chr6:33,217,311-33,222,766
(GRCh37/hg19)

Genomic View for HCG25 Gene

Genes around HCG25 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
HCG25 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for HCG25 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

Proteins for HCG25 Gene

Post-translational modifications for HCG25 Gene

No Post-translational modifications

No data available for DME Specific Peptides for HCG25 Gene

Domains & Families for HCG25 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for HCG25 Gene

Function for HCG25 Gene

Phenotypes From GWAS Catalog for HCG25 Gene

Animal Model Products

Clone Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for HCG25 Gene

Localization for HCG25 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for HCG25 Gene

Pathways & Interactions for HCG25 Gene

SuperPathways for HCG25 Gene

No Data Available

Interacting Proteins for HCG25 Gene

Gene Ontology (GO) - Biological Process for HCG25 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for HCG25 Gene

Drugs & Compounds for HCG25 Gene

No Compound Related Data Available

Transcripts for HCG25 Gene

mRNA/cDNA for HCG25 Gene

(1) Additional mRNA sequences :
(4) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Unigene Clusters for HCG25 Gene

HLA complex group 25 (non-protein coding):
Representative Sequences:

Clone Products

Alternative Splicing Database (ASD) splice patterns (SP) for HCG25 Gene

No ASD Table

Relevant External Links for HCG25 Gene

GeneLoc Exon Structure for
HCG25
ECgene alternative splicing isoforms for
HCG25

Expression for HCG25 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for HCG25 Gene

NURSA nuclear receptor signaling pathways regulating expression of HCG25 Gene:

HCG25

SOURCE GeneReport for Unigene cluster for HCG25 Gene:

Hs.675862
genes like me logo Genes that share expression patterns with HCG25: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for HCG25 Gene

Orthologs for HCG25 Gene

Evolution for HCG25 Gene

ENSEMBL:
Gene Tree for HCG25 (if available)
TreeFam:
Gene Tree for HCG25 (if available)

No data available for Orthologs for HCG25 Gene

Paralogs for HCG25 Gene

No data available for Paralogs for HCG25 Gene

Variants for HCG25 Gene

Sequence variations from dbSNP and Humsavar for HCG25 Gene

SNP ID Clin Chr 06 pos Sequence Context AA Info Type
rs1000779401 -- 33,250,292(+) ACTAA(A/G)TATTT intron-variant, utr-variant-3-prime
rs1000816719 -- 33,249,533(+) CAATT(-/A)AGGAG upstream-variant-2KB
rs1001982582 -- 33,249,246(+) GATCT(A/G)GGCAA upstream-variant-2KB
rs1002011 -- 33,250,460(+) GCTGA(A/G)GAGGC intron-variant, utr-variant-3-prime
rs1002092914 -- 33,249,449(+) TCTCG(C/G)ATATG upstream-variant-2KB

Structural Variations from Database of Genomic Variants (DGV) for HCG25 Gene

Variant ID Type Subtype PubMed ID
nsv830634 CNV loss 17160897
nsv1119076 CNV deletion 24896259
nsv1112900 CNV deletion 24896259
nsv1073969 CNV deletion 25765185
dgv10609n54 CNV loss 21841781

Relevant External Links for HCG25 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
HCG25

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for HCG25 Gene

Disorders for HCG25 Gene

Relevant External Links for HCG25

Atlas of Genetics and Cytogenetics in Oncology and Haematology:
HCG25

No disorders were found for HCG25 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for HCG25 Gene

Publications for HCG25 Gene

No publications were found for HCG25 Gene.

Products for HCG25 Gene

Sources for HCG25 Gene

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