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Aliases for HCG24 Gene

Subcategory (RNA class) for HCG24 Gene

non-coding RNA

Quality Score for this RNA gene is

3

Aliases for HCG24 Gene

  • HLA Complex Group 24 (Non-Protein Coding) 2 3 5
  • HLA Complex Group 24 2

External Ids for HCG24 Gene

Previous GeneCards Identifiers for HCG24 Gene

  • GC00U915697
  • GC06U900754

Summaries for HCG24 Gene

GeneCards Summary for HCG24 Gene

HCG24 (HLA Complex Group 24 (Non-Protein Coding)) is an RNA Gene, and is affiliated with the non-coding RNA class. Diseases associated with HCG24 include Pelvic Varices.

No data available for Entrez Gene Summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for HCG24 Gene

Genomics for HCG24 Gene

Regulatory Elements for HCG24 Gene

Enhancers for HCG24 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH06F033116 0.8 Ensembl ENCODE 13.4 -25.8 -25828 2.5 HDGF BCOR ELF3 CTCF PKNOX1 TEAD4 MAX ZMYM3 EBF1 ZNF2 HLA-DPB1 HLA-DPA1 HLA-DPB2 HCG24 RPL32P1 COL11A2 HSD17B8 PIR46525 PIR47274
GH06F033131 0.6 Ensembl 12.8 -11.2 -11173 0.5 PKNOX1 PBX2 HLA-DPB1 HSD17B8 HCG24 COL11A2 RNY4P10 RXRB SLC39A7 MIR219A1 RPL32P1 HLA-DPA1
GH06F033160 0.9 FANTOM5 Ensembl ENCODE 11.9 +18.2 18207 2.0 PKNOX1 CREB3L1 ZFP64 ARID4B DMAP1 ZNF48 ZNF2 GLIS2 ZNF143 SP3 HSD17B8 HCG24 RPS18 HLA-DPB1 HLA-DPB2 COL11A2
GH06F033111 1 Ensembl ENCODE 10.8 -29.6 -29635 3.7 HDGF PKNOX1 ATF1 GLI4 ZNF2 ZNF121 ZNF143 FOS ZNF263 SP3 HLA-DPA1 HLA-DPB1 HSD17B8 COL11A2 RPS18 RPL32P1 HCG24 HLA-DPB2 HLA-DPA3 HLA-DMA
GH06F033119 0.5 FANTOM5 8.4 -23.3 -23290 0.2 HSD17B8 COL11A2 RNY4P10 RXRB SLC39A7 MIR219A1 HLA-DPA1 HLA-DPB1 RPL32P1 HCG24
- Elite enhancer/Elite enhancer-gene association Download Table
Download GeneHancer data dump

Enhancers around HCG24 on UCSC Golden Path with GeneCards custom track

Genomic Location for HCG24 Gene

Chromosome:
6
Start:
33,143,388 bp from pter
End:
33,147,767 bp from pter
Size:
4,380 bases
Orientation:
Plus strand

Genomic View for HCG24 Gene

Genes around HCG24 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
HCG24 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for HCG24 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for HCG24 Gene

Proteins for HCG24 Gene

Post-translational modifications for HCG24 Gene

No Post-translational modifications

No data available for DME Specific Peptides for HCG24 Gene

Domains & Families for HCG24 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for HCG24 Gene

Function for HCG24 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for HCG24 Gene

Localization for HCG24 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for HCG24 Gene

Pathways & Interactions for HCG24 Gene

SuperPathways for HCG24 Gene

No Data Available

Interacting Proteins for HCG24 Gene

Gene Ontology (GO) - Biological Process for HCG24 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for HCG24 Gene

Transcripts for HCG24 Gene

mRNA/cDNA for HCG24 Gene

(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for HCG24 Gene

No ASD Table

Relevant External Links for HCG24 Gene

GeneLoc Exon Structure for
HCG24
ECgene alternative splicing isoforms for
HCG24

Expression for HCG24 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for HCG24 Gene

mRNA differential expression in normal tissues according to GTEx for HCG24 Gene

This gene is overexpressed in Brain - Cerebellar Hemisphere (x13.2), Brain - Cerebellum (x10.8), and Brain - Nucleus accumbens (basal ganglia) (x6.8).

NURSA nuclear receptor signaling pathways regulating expression of HCG24 Gene:

HCG24
genes like me logo Genes that share expression patterns with HCG24: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners and mRNA Expression by UniProt/SwissProt for HCG24 Gene

Orthologs for HCG24 Gene

Evolution for HCG24 Gene

ENSEMBL:
Gene Tree for HCG24 (if available)
TreeFam:
Gene Tree for HCG24 (if available)

No data available for Orthologs for HCG24 Gene

Paralogs for HCG24 Gene

No data available for Paralogs for HCG24 Gene

Variants for HCG24 Gene

Sequence variations from dbSNP and Humsavar for HCG24 Gene

SNP ID Clin Chr 06 pos Sequence Context AA Info Type
rs1003979 -- 33,146,394(-) tagac(A/G)atatt intron-variant
rs1009616 -- 33,146,279(-) tgccc(A/C)gtgtg intron-variant
rs10685489 -- 33,148,886(+) CAATT(-/AAAC)AAAGA downstream-variant-500B
rs10947399 -- 33,146,942(+) AAAAA(A/G)AAAAA intron-variant
rs111299704 -- 33,149,242(+) GCAGA(A/G)CCGCC downstream-variant-500B

Relevant External Links for HCG24 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
HCG24

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for HCG24 Gene

Disorders for HCG24 Gene

MalaCards: The human disease database

(1) MalaCards diseases for HCG24 Gene - From: DISEASES

Disorder Aliases PubMed IDs
pelvic varices
- elite association - COSMIC cancer census association via MalaCards
Search HCG24 in MalaCards View complete list of genes associated with diseases

Relevant External Links for HCG24

Atlas of Genetics and Cytogenetics in Oncology and Haematology:
HCG24
genes like me logo Genes that share disorders with HCG24: view

No data available for UniProtKB/Swiss-Prot and Genatlas for HCG24 Gene

Publications for HCG24 Gene

No publications were found for HCG24 Gene.

Products for HCG24 Gene

Sources for HCG24 Gene

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