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Aliases for HCG23 Gene

Subcategory (RNA class) for HCG23 Gene


Quality Score for this RNA gene is


Aliases for HCG23 Gene

  • HLA Complex Group 23 (Non-Protein Coding) 2 3
  • HLA Complex Group 23 2
  • DJ1077I5.3 3

External Ids for HCG23 Gene

ORGUL Members for HCG23 Gene

Previous GeneCards Identifiers for HCG23 Gene

  • GC00U915693
  • GC06U900751
  • GC06P032359

Summaries for HCG23 Gene

GeneCards Summary for HCG23 Gene

HCG23 (HLA Complex Group 23 (Non-Protein Coding)) is an RNA Gene, and is affiliated with the lncRNA class.

No data available for Entrez Gene Summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for HCG23 Gene

Genomics for HCG23 Gene

Genomic Location for HCG23 Gene

32,390,510 bp from pter
32,393,691 bp from pter
3,182 bases
Plus strand

Genomic View for HCG23 Gene

UCSC Golden Path with GeneCards custom track
Cytogenetic band:
Genomic Location for HCG23 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

No data available for Regulatory Elements for HCG23 Gene

Proteins for HCG23 Gene

Post-translational modifications for HCG23 Gene

No Post-translational modifications

No data available for DME Specific Peptides for HCG23 Gene

Domains for HCG23 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for HCG23 Gene

Function for HCG23 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Animal Models , miRNA , Transcription Factor Targeting and HOMER Transcription for HCG23 Gene

Localization for HCG23 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for HCG23 Gene

Pathways for HCG23 Gene

SuperPathways for HCG23 Gene

No Data Available

Interacting Proteins for HCG23 Gene

Gene Ontology (GO) - Biological Process for HCG23 Gene


No data available for Pathways by source for HCG23 Gene

Transcripts for HCG23 Gene

mRNA/cDNA for HCG23 Gene

(1) Additional mRNA sequences :
(2) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Unigene Clusters for HCG23 Gene

HLA complex group 23 (non-protein coding):
Representative Sequences:

Alternative Splicing Database (ASD) splice patterns (SP) for HCG23 Gene

No ASD Table

Relevant External Links for HCG23 Gene

GeneLoc Exon Structure for
ECgene alternative splicing isoforms for

Expression for HCG23 Gene

mRNA expression in normal human tissues for HCG23 Gene

mRNA differential expression in normal tissues according to GTEx for HCG23 Gene

This gene is overexpressed in Brain - Spinal cord (cervical c-1) (5.6).

SOURCE GeneReport for Unigene cluster for HCG23 Gene Hs.57692

genes like me logo Genes that share expressions with HCG23: view

Primer Products

In Situ Assay Products

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , mRNA Expression by UniProt/SwissProt and Expression partners for HCG23 Gene

Orthologs for HCG23 Gene

Evolution for HCG23 Gene

Gene Tree for HCG23 (if available)
Gene Tree for HCG23 (if available)

No data available for Orthologs for HCG23 Gene

Paralogs for HCG23 Gene

No data available for Paralogs for HCG23 Gene

Variants for HCG23 Gene

Sequence variations from dbSNP and Humsavar for HCG23 Gene

SNP ID Clin Chr 06 pos Sequence Context AA Info Type MAF
rs1143257 -- 32,391,356(+) AATGG(A/G)TAGTA intron-variant
rs1143258 -- 32,391,379(+) GTATG(A/G)AGTTT intron-variant
rs1143259 -- 32,391,431(+) ATGAT(A/G)GTCAC intron-variant
rs1143260 -- 32,391,450(+) GTCAC(A/G)TATAC intron-variant
rs1143261 -- 32,391,453(+) ACATA(C/T)ACAAT intron-variant

Structural Variations from Database of Genomic Variants (DGV) for HCG23 Gene

Variant ID Type Subtype PubMed ID
nsv830630 CNV Loss 17160897
nsv7882 CNV Loss 18304495
dgv1011n67 CNV Loss 20364138
nsv884740 CNV Loss 21882294

Relevant External Links for HCG23 Gene

HapMap Linkage Disequilibrium report

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot for HCG23 Gene

Disorders for HCG23 Gene

No disorders were found for HCG23 Gene.

No data available for MalaCards , OMIM , UniProtKB/Swiss-Prot , University of Copenhagen DISEASES , Novoseek inferred disease relationships , Genatlas and External Links for HCG23 Gene

Publications for HCG23 Gene

  1. Genome-wide association study identifies three new susceptibility loci for adult asthma in the Japanese population. (PMID: 21804548) Hirota T. … Tamari M. (Nat. Genet. 2011) 3
  2. Genome-wide association study in a Swedish population yields support for greater CNV and MHC involvement in schizophrenia compared with bipolar disorder. (PMID: 22688191) Bergen S.E. … Sullivan P.F. (Mol. Psychiatry 2012) 3
  3. Identification of 23 new prostate cancer susceptibility loci using the iCOGS custom genotyping array. (PMID: 23535732) Eeles R.A. … Easton D.F. (Nat. Genet. 2013) 3

Products for HCG23 Gene

Sources for HCG23 Gene

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