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Aliases for HCG23 Gene

Subcategory (RNA class) for HCG23 Gene

non-coding RNA

Quality Score for this RNA gene is

3

Aliases for HCG23 Gene

  • HLA Complex Group 23 (Non-Protein Coding) 2 3 5
  • HLA Complex Group 23 2
  • DJ1077I5.3 3

External Ids for HCG23 Gene

Previous GeneCards Identifiers for HCG23 Gene

  • GC00U915693
  • GC06U900751
  • GC06P032359

Summaries for HCG23 Gene

GeneCards Summary for HCG23 Gene

HCG23 (HLA Complex Group 23 (Non-Protein Coding)) is an RNA Gene, and is affiliated with the non-coding RNA class.

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for HCG23 Gene

Genomics for HCG23 Gene

Regulatory Elements for HCG23 Gene

Enhancers for HCG23 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH06G032621 1.9 FANTOM5 Ensembl ENCODE dbSUPER 6.6 +234.7 234713 8.3 PKNOX1 WRNIP1 FEZF1 ZNF2 ZNF143 ZNF207 JUNB TBX21 ZNF610 NBN HLA-DRB1 HLA-DQA2 HLA-DRB6 HLA-DQB1 HLA-DRB5 HLA-DQB2 HLA-DQA1 CYP21A1P HLA-DQB1-AS1 HLA-DPB1
GH06G032393 0.7 ENCODE 17 +3.4 3415 1.7 CTCF ZNF146 JUN ETV1 RAD21 FOSL1 GATA3 GATA2 SCRT2 SMC3 HLA-DRB6 HLA-DRB1 HCG23 C4A MICB BTNL2
GH06G031567 2.1 FANTOM5 Ensembl ENCODE dbSUPER 5.4 -812.1 -812092 22.2 CREB3L1 MLX AGO1 ZFP64 DMAP1 FEZF1 YBX1 YY1 SLC30A9 ZNF143 DDX39B TNF LY6G5B LSM2 DHX16 ATF6B TCF19 PPP1R10 VARS CSNK2B
GH06G032432 0.9 ENCODE dbSUPER 10.9 +41.7 41659 0.1 CTCF ZNF654 TRIM22 JUNB REST RAD21 RFX5 ZNF664 SMC3 HCG23 C6orf10 HLA-DQB1-AS1 HLA-DQB1 PSMB9 TAP1 HLA-DRA BTNL2
GH06G032794 0.8 FANTOM5 Ensembl ENCODE 11.7 +404.1 404099 0.8 HLA-DOB TAP1 PSMB8 HCG23 PSMB9 SYNGAP1 HLA-DMA TAP2 HLA-DQB1 HLA-DRA
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around HCG23 on UCSC Golden Path with GeneCards custom track

Genomic Location for HCG23 Gene

Chromosome:
6
Start:
32,390,510 bp from pter
End:
32,393,691 bp from pter
Size:
3,182 bases
Orientation:
Plus strand

Genomic View for HCG23 Gene

Genes around HCG23 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
HCG23 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for HCG23 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

Proteins for HCG23 Gene

Post-translational modifications for HCG23 Gene

No Post-translational modifications

No data available for DME Specific Peptides for HCG23 Gene

Domains & Families for HCG23 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for HCG23 Gene

Function for HCG23 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for HCG23 Gene

Localization for HCG23 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for HCG23 Gene

Pathways & Interactions for HCG23 Gene

SuperPathways for HCG23 Gene

No Data Available

Interacting Proteins for HCG23 Gene

Gene Ontology (GO) - Biological Process for HCG23 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for HCG23 Gene

Drugs & Compounds for HCG23 Gene

No Compound Related Data Available

Transcripts for HCG23 Gene

mRNA/cDNA for HCG23 Gene

(1) Additional mRNA sequences :
(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Unigene Clusters for HCG23 Gene

HLA complex group 23 (non-protein coding):
Representative Sequences:

Alternative Splicing Database (ASD) splice patterns (SP) for HCG23 Gene

No ASD Table

Relevant External Links for HCG23 Gene

GeneLoc Exon Structure for
HCG23
ECgene alternative splicing isoforms for
HCG23

Expression for HCG23 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for HCG23 Gene

mRNA differential expression in normal tissues according to GTEx for HCG23 Gene

This gene is overexpressed in Brain - Spinal cord (cervical c-1) (x5.6).

NURSA nuclear receptor signaling pathways regulating expression of HCG23 Gene:

HCG23

SOURCE GeneReport for Unigene cluster for HCG23 Gene:

Hs.57692
genes like me logo Genes that share expression patterns with HCG23: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for HCG23 Gene

Orthologs for HCG23 Gene

Evolution for HCG23 Gene

ENSEMBL:
Gene Tree for HCG23 (if available)
TreeFam:
Gene Tree for HCG23 (if available)

No data available for Orthologs for HCG23 Gene

Paralogs for HCG23 Gene

No data available for Paralogs for HCG23 Gene

Variants for HCG23 Gene

Sequence variations from dbSNP and Humsavar for HCG23 Gene

SNP ID Clin Chr 06 pos Sequence Context AA Info Type
rs1000365591 -- 32,388,895(+) CAGAC(C/T)CTGGT intron-variant, upstream-variant-2KB
rs1000388513 -- 32,391,728(+) GCAGA(A/G)CGTCA intron-variant, nc-transcript-variant
rs1000738756 -- 32,391,924(+) TTGCT(C/G)TAACA intron-variant
rs1000819615 -- 32,388,690(+) AGCTG(A/G)GACTA intron-variant, upstream-variant-2KB
rs1002093836 -- 32,389,856(+) CTTAT(C/T)TTCAT intron-variant, upstream-variant-2KB

Structural Variations from Database of Genomic Variants (DGV) for HCG23 Gene

Variant ID Type Subtype PubMed ID
dgv1011n67 CNV loss 20364138
dgv10404n54 CNV loss 21841781
dgv10463n54 CNV loss 21841781
dgv10472n54 CNV loss 21841781
dgv1754e212 CNV loss 25503493
esv3570969 CNV loss 25503493
nsv1073969 CNV deletion 25765185
nsv1112900 CNV deletion 24896259
nsv1126749 CNV deletion 24896259
nsv602110 CNV loss 21841781
nsv7882 CNV loss 18304495
nsv830630 CNV loss 17160897

Relevant External Links for HCG23 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
HCG23

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for HCG23 Gene

Disorders for HCG23 Gene

Relevant External Links for HCG23

Atlas of Genetics and Cytogenetics in Oncology and Haematology:
HCG23

No disorders were found for HCG23 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for HCG23 Gene

Publications for HCG23 Gene

  1. Identification of 23 new prostate cancer susceptibility loci using the iCOGS custom genotyping array. (PMID: 23535732) Eeles R.A. … Easton D.F. (Nat. Genet. 2013) 3 64
  2. Genome-wide association study in a Swedish population yields support for greater CNV and MHC involvement in schizophrenia compared with bipolar disorder. (PMID: 22688191) Bergen S.E. … Sullivan P.F. (Mol. Psychiatry 2012) 3 64
  3. Genome-wide association study identifies three new susceptibility loci for adult asthma in the Japanese population. (PMID: 21804548) Hirota T. … Tamari M. (Nat. Genet. 2011) 3 64

Products for HCG23 Gene

Sources for HCG23 Gene

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