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Aliases for HCG23 Gene

Subcategory (RNA class) for HCG23 Gene

non-coding RNA

Quality Score for this RNA gene is


Aliases for HCG23 Gene

  • HLA Complex Group 23 (Non-Protein Coding) 2 3 5
  • HLA Complex Group 23 2
  • DJ1077I5.3 3

External Ids for HCG23 Gene

Previous GeneCards Identifiers for HCG23 Gene

  • GC00U915693
  • GC06U900751
  • GC06P032359

Summaries for HCG23 Gene

GeneCards Summary for HCG23 Gene

HCG23 (HLA Complex Group 23 (Non-Protein Coding)) is an RNA Gene, and is affiliated with the non-coding RNA class.

No data available for Entrez Gene Summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for HCG23 Gene

Genomics for HCG23 Gene

Regulatory Elements for HCG23 Gene

Enhancers for HCG23 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH06F032393 0.8 Ensembl ENCODE 17 +3.4 3415 1.7 CTCF ZNF146 RFX1 ETV1 JUN RAD21 GABPA GATA3 ATF3 GATA2 HLA-DRB6 HLA-DRB1 HCG23 C4A MICB BTNL2
GH06F031567 1.3 FANTOM5 Ensembl ENCODE 13.6 -812.2 -812240 22.5 MLX CREB3L1 ZFP64 FEZF1 DMAP1 YBX1 YY1 SLC30A9 ZNF143 ZNF548 DDX39B TNF LY6G5B DHX16 ATF6B LSM2 MICA TCF19 C6orf47 PPT2
GH06F032793 1.5 FANTOM5 Ensembl ENCODE 11.7 +404.0 403991 1.4 HLA-DOB C4A TAP1 PSMB8 HCG23 C6orf10 SYNGAP1 PSMB9 HLA-DMA TAP2
GH06F032411 0.7 ENCODE 11 +21.4 21431 1.5 BCL11A SCRT2 FEZF1 HLA-DRB6 HLA-DQA2 C4A HCG23 HLA-DRB1 HLA-DRB5 BTNL2 HLA-DRA
- Elite enhancer/Elite enhancer-gene association Download Table
Download GeneHancer data dump

Enhancers around HCG23 on UCSC Golden Path with GeneCards custom track

Genomic Location for HCG23 Gene

32,390,510 bp from pter
32,393,691 bp from pter
3,182 bases
Plus strand

Genomic View for HCG23 Gene

Genes around HCG23 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
HCG23 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for HCG23 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

Proteins for HCG23 Gene

Post-translational modifications for HCG23 Gene

No Post-translational modifications

No data available for DME Specific Peptides for HCG23 Gene

Domains & Families for HCG23 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for HCG23 Gene

Function for HCG23 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for HCG23 Gene

Localization for HCG23 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for HCG23 Gene

Pathways & Interactions for HCG23 Gene

SuperPathways for HCG23 Gene

No Data Available

Interacting Proteins for HCG23 Gene

Gene Ontology (GO) - Biological Process for HCG23 Gene


No data available for Pathways by source and SIGNOR curated interactions for HCG23 Gene

Transcripts for HCG23 Gene

mRNA/cDNA for HCG23 Gene

(1) Additional mRNA sequences :
(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Unigene Clusters for HCG23 Gene

HLA complex group 23 (non-protein coding):
Representative Sequences:

Alternative Splicing Database (ASD) splice patterns (SP) for HCG23 Gene

No ASD Table

Relevant External Links for HCG23 Gene

GeneLoc Exon Structure for
ECgene alternative splicing isoforms for

Expression for HCG23 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for HCG23 Gene

mRNA differential expression in normal tissues according to GTEx for HCG23 Gene

This gene is overexpressed in Brain - Spinal cord (cervical c-1) (x5.6).

NURSA nuclear receptor signaling pathways regulating expression of HCG23 Gene:


SOURCE GeneReport for Unigene cluster for HCG23 Gene:

genes like me logo Genes that share expression patterns with HCG23: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners and mRNA Expression by UniProt/SwissProt for HCG23 Gene

Orthologs for HCG23 Gene

Evolution for HCG23 Gene

Gene Tree for HCG23 (if available)
Gene Tree for HCG23 (if available)

No data available for Orthologs for HCG23 Gene

Paralogs for HCG23 Gene

No data available for Paralogs for HCG23 Gene

Variants for HCG23 Gene

Sequence variations from dbSNP and Humsavar for HCG23 Gene

SNP ID Clin Chr 06 pos Sequence Context AA Info Type
rs111682962 -- 32,392,666(+) TAGGC(C/T)GGATC intron-variant
rs112228779 -- 32,389,032(+) TTAGT(A/G)TAAGA intron-variant, upstream-variant-2KB
rs113360624 -- 32,392,542(+) AAAAA(A/G)AAAAA intron-variant
rs113373443 -- 32,391,464(+) ACCAC(A/G)GAACT intron-variant
rs113485731 -- 32,392,700(+) GTCTC(A/T)GAAAA intron-variant

Structural Variations from Database of Genomic Variants (DGV) for HCG23 Gene

Variant ID Type Subtype PubMed ID
dgv1011n67 CNV loss 20364138
dgv10404n54 CNV loss 21841781
dgv10463n54 CNV loss 21841781
dgv10472n54 CNV loss 21841781
dgv1754e212 CNV loss 25503493
esv3570969 CNV loss 25503493
nsv1073969 CNV deletion 25765185
nsv1112900 CNV deletion 24896259
nsv1126749 CNV deletion 24896259
nsv602110 CNV loss 21841781
nsv7882 CNV loss 18304495
nsv830630 CNV loss 17160897

Relevant External Links for HCG23 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for HCG23 Gene

Disorders for HCG23 Gene

Relevant External Links for HCG23

Atlas of Genetics and Cytogenetics in Oncology and Haematology:

No disorders were found for HCG23 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for HCG23 Gene

Publications for HCG23 Gene

  1. Identification of 23 new prostate cancer susceptibility loci using the iCOGS custom genotyping array. (PMID: 23535732) Eeles R.A. … Easton D.F. (Nat. Genet. 2013) 3 64
  2. Genome-wide association study in a Swedish population yields support for greater CNV and MHC involvement in schizophrenia compared with bipolar disorder. (PMID: 22688191) Bergen S.E. … Sullivan P.F. (Mol. Psychiatry 2012) 3 64
  3. Genome-wide association study identifies three new susceptibility loci for adult asthma in the Japanese population. (PMID: 21804548) Hirota T. … Tamari M. (Nat. Genet. 2011) 3 64

Products for HCG23 Gene

Sources for HCG23 Gene

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