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Aliases for HCG21 Gene

Subcategory (RNA class) for HCG21 Gene

non-coding RNA

Quality Score for this RNA gene is

3

Aliases for HCG21 Gene

  • HLA Complex Group 21 (Non-Protein Coding) 2 3 5
  • Non-Protein Coding RNA 150 2
  • NCRNA00150 3

External Ids for HCG21 Gene

Previous GeneCards Identifiers for HCG21 Gene

  • GC00U915704
  • GC06U900758
  • GC06M030914

Summaries for HCG21 Gene

GeneCards Summary for HCG21 Gene

HCG21 (HLA Complex Group 21 (Non-Protein Coding)) is an RNA Gene, and is affiliated with the non-coding RNA class.

Additional gene information for HCG21 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for HCG21 Gene

Genomics for HCG21 Gene

Regulatory Elements for HCG21 Gene

Enhancers for HCG21 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH06H030981 1 Ensembl ENCODE 33.8 -26.6 -26557 0 CTCF RAD21 ZNF2 ZFHX2 ZNF366 PRDM10 EGR2 ZNF639 SP3 ZNF501 HCG21 DPCR1 VARS2 GTF2H4 DDR1 MUC21 NAPGP2
GH06H030777 2.1 FANTOM5 Ensembl ENCODE dbSUPER 10.3 +173.4 173355 10 MLX ZFP64 DMAP1 YY1 SLC30A9 SP3 NFYC PPARGC1A MEF2D SSRP1 IER3 VARS2 PPP1R10 MDC1 DDX39B GTF2H4 ENSG00000233892 LY6G5B ETF1P1 TRIM39
GH06H030757 2.1 FANTOM5 Ensembl ENCODE dbSUPER 9.7 +191.4 191402 13 MLX ZFP64 FEZF1 DMAP1 YY1 SLC30A9 SP3 NFYC MEF2D SSRP1 IER3 VARS2 MDC1 PPP1R10 DDR1 C6orf136 PPP1R18 MSH5 FLOT1 ENSG00000237669
GH06H030826 1.9 FANTOM5 Ensembl ENCODE dbSUPER 10.4 +126.4 126440 5 HDGF ARNT ARID4B SIN3A DMAP1 YY1 SLC30A9 ZNF766 ZNF143 FOS DDR1 VARS2 IER3 LINC00243 HLA-C DDR1-AS1 FLOT1 DPCR1 HCG21 HCG27
GH06H030746 2 FANTOM5 Ensembl ENCODE dbSUPER 9.7 +204.3 204293 9 PKNOX1 FOXA2 ARID4B SIN3A FEZF1 ZNF2 ZNF766 FOS DEK PAF1 MDC1 IER3 GTF2H4 ENSG00000233892 LY6G5B DHX16 DDX39B TRIM39 PPP1R10 HLA-K
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around HCG21 on UCSC Golden Path with GeneCards custom track

Promoters for HCG21 Gene
Ensembl Regulatory Elements (ENSRs) TSS Distance (bp) Size (bp) Binding Sites for Transcription Factors within promoters
ENSR00000195473 20 201 PKNOX1 ATF1 SIN3A TCF12 ELK1 ZNF143 ATF7 RUNX3 NCOA1 ZC3H11A

Genomic Location for HCG21 Gene

Chromosome:
6
Start:
30,945,979 bp from pter
End:
30,955,720 bp from pter
Size:
9,742 bases
Orientation:
Minus strand

Genomic View for HCG21 Gene

Genes around HCG21 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
HCG21 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for HCG21 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for HCG21 Gene

Proteins for HCG21 Gene

Post-translational modifications for HCG21 Gene

No Post-translational modifications

No data available for DME Specific Peptides for HCG21 Gene

Domains & Families for HCG21 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for HCG21 Gene

Function for HCG21 Gene

Phenotypes From GWAS Catalog for HCG21 Gene

Animal Model Products

CRISPR Products

Clone Products

  • Applied Biological Materials Clones for HCG21
  • Vectors and viruses for ORF, Lenti, Retro, Adenovirus, AAV, and more

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for HCG21 Gene

Localization for HCG21 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for HCG21 Gene

Pathways & Interactions for HCG21 Gene

SuperPathways for HCG21 Gene

No Data Available

Interacting Proteins for HCG21 Gene

Gene Ontology (GO) - Biological Process for HCG21 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for HCG21 Gene

Drugs & Compounds for HCG21 Gene

No Compound Related Data Available

Transcripts for HCG21 Gene

mRNA/cDNA for HCG21 Gene

(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

CRISPR Products

Clone Products

  • Applied Biological Materials Clones for HCG21
  • Vectors and viruses for ORF, Lenti, Retro, Adenovirus, AAV, and more

Alternative Splicing Database (ASD) splice patterns (SP) for HCG21 Gene

No ASD Table

Relevant External Links for HCG21 Gene

GeneLoc Exon Structure for
HCG21
ECgene alternative splicing isoforms for
HCG21

Expression for HCG21 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for HCG21 Gene

mRNA differential expression in normal tissues according to GTEx for HCG21 Gene

This gene is overexpressed in Stomach (x37.0) and Esophagus - Mucosa (x5.2).

NURSA nuclear receptor signaling pathways regulating expression of HCG21 Gene:

HCG21
genes like me logo Genes that share expression patterns with HCG21: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for HCG21 Gene

Orthologs for HCG21 Gene

Evolution for HCG21 Gene

ENSEMBL:
Gene Tree for HCG21 (if available)
TreeFam:
Gene Tree for HCG21 (if available)

No data available for Orthologs for HCG21 Gene

Paralogs for HCG21 Gene

No data available for Paralogs for HCG21 Gene

Variants for HCG21 Gene

Sequence variations from dbSNP and Humsavar for HCG21 Gene

SNP ID Clin Chr 06 pos Sequence Context AA Info Type
rs1000631747 -- 30,952,726(+) GAAAG(G/T)GTGTG intron-variant
rs1001103911 -- 30,947,837(+) ATCAC(C/T)GAAAT intron-variant, nc-transcript-variant
rs1001154652 -- 30,948,278(+) TAGAC(A/G)GATCA intron-variant, nc-transcript-variant
rs1001363225 -- 30,955,752(+) CTCCA(A/G/T)GTTCC upstream-variant-2KB
rs1001694888 -- 30,949,606(+) GCCTA(C/T)AGAAC intron-variant, upstream-variant-2KB, reference, missense

Relevant External Links for HCG21 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
HCG21

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for HCG21 Gene

Disorders for HCG21 Gene

Relevant External Links for HCG21

Atlas of Genetics and Cytogenetics in Oncology and Haematology:
HCG21

No disorders were found for HCG21 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for HCG21 Gene

Publications for HCG21 Gene

No publications were found for HCG21 Gene.

Products for HCG21 Gene

Sources for HCG21 Gene

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