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Aliases for HCG21 Gene

Subcategory (RNA class) for HCG21 Gene

non-coding RNA

Quality Score for this RNA gene is

3

Aliases for HCG21 Gene

  • HLA Complex Group 21 (Non-Protein Coding) 2 3 5
  • Non-Protein Coding RNA 150 2
  • NCRNA00150 3

External Ids for HCG21 Gene

Previous GeneCards Identifiers for HCG21 Gene

  • GC00U915704
  • GC06U900758
  • GC06M030914

Summaries for HCG21 Gene

GeneCards Summary for HCG21 Gene

HCG21 (HLA Complex Group 21 (Non-Protein Coding)) is an RNA Gene, and is affiliated with the non-coding RNA class.

No data available for Entrez Gene Summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for HCG21 Gene

Genomics for HCG21 Gene

Regulatory Elements for HCG21 Gene

Enhancers for HCG21 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH06F030981 0.8 Ensembl ENCODE 33.8 -26.6 -26634 0.9 CTCF TEAD4 ZNF2 RAD21 ZFHX2 GLIS2 ZNF366 PRDM10 EGR2 ZNF639 HCG21 DPCR1 GTF2H4 VARS2 DDR1 MIR4640 MUC21 LOC100420530
GH06F031007 1.4 Ensembl ENCODE 22.1 -52.2 -52249 1.0 CTCF ZNF362 JUND BHLHE40 SIN3A FOS RAD21 HCG21 MUC22 DPCR1 LY6G5C PSORS1C1 GC06P031035
GH06F031245 1.3 Ensembl ENCODE 15.9 -290.6 -290581 1.0 ELF3 INSM2 ZNF76 KLF17 RAD21 ZNF2 RARA RFX5 ZNF366 SCRT2 HLA-C CCHCR1 ENSG00000272501 HCG21 POU5F1 PSORS1C3 PSORS1C1 DDX39B SNORD117 HLA-L
GH06F031036 0.2 ENCODE 11.7 -81.9 -81936 1.4 ZBED1 CBFB BHLHE40 JUNB ZFHX2 SMARCA4 POLR2A IKZF1 EED ETV6 HCG22 CCHCR1 PSORS1C1 HCG21 DPCR1 LOC101929072 ENSG00000199332 GC06P031035
GH06F031040 0.8 ENCODE 11.5 -85.6 -85613 0.7 GATAD2A HNF1A HCG22 HLA-C DPCR1 HCG21 TRIM10 ENSG00000199332 GC06P031035
- Elite enhancer/Elite enhancer-gene association Download Table
Download GeneHancer data dump

Enhancers around HCG21 on UCSC Golden Path with GeneCards custom track

Promoters for HCG21 Gene
Ensembl Regulatory Elements (ENSRs) TSS Distance (bp) Size (bp) Binding Sites for Transcription Factors within promoters
ENSR00001879715 -80 801 ATF1 PKNOX1 CREB3L1 ELK1 KDM4B ZNF263 NCOA1 SMARCA4 PBX2 NBN

Genomic Location for HCG21 Gene

Chromosome:
6
Start:
30,945,979 bp from pter
End:
30,955,720 bp from pter
Size:
9,742 bases
Orientation:
Minus strand

Genomic View for HCG21 Gene

Genes around HCG21 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
HCG21 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for HCG21 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for HCG21 Gene

Proteins for HCG21 Gene

Post-translational modifications for HCG21 Gene

No Post-translational modifications

No data available for DME Specific Peptides for HCG21 Gene

Domains & Families for HCG21 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for HCG21 Gene

Function for HCG21 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for HCG21 Gene

Localization for HCG21 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for HCG21 Gene

Pathways & Interactions for HCG21 Gene

SuperPathways for HCG21 Gene

No Data Available

Interacting Proteins for HCG21 Gene

Gene Ontology (GO) - Biological Process for HCG21 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for HCG21 Gene

Transcripts for HCG21 Gene

mRNA/cDNA for HCG21 Gene

(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for HCG21 Gene

No ASD Table

Relevant External Links for HCG21 Gene

GeneLoc Exon Structure for
HCG21
ECgene alternative splicing isoforms for
HCG21

Expression for HCG21 Gene

mRNA expression in normal human tissues for HCG21 Gene

mRNA differential expression in normal tissues according to GTEx for HCG21 Gene

This gene is overexpressed in Stomach (x37.0) and Esophagus - Mucosa (x5.2).

NURSA nuclear receptor signaling pathways regulating expression of HCG21 Gene:

HCG21
genes like me logo Genes that share expression patterns with HCG21: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners and mRNA Expression by UniProt/SwissProt for HCG21 Gene

Orthologs for HCG21 Gene

Evolution for HCG21 Gene

ENSEMBL:
Gene Tree for HCG21 (if available)
TreeFam:
Gene Tree for HCG21 (if available)

No data available for Orthologs for HCG21 Gene

Paralogs for HCG21 Gene

No data available for Paralogs for HCG21 Gene

Variants for HCG21 Gene

Sequence variations from dbSNP and Humsavar for HCG21 Gene

SNP ID Clin Chr 06 pos Sequence Context AA Info Type
rs111658797 -- 30,950,664(+) AGACC(A/G)CACCA intron-variant, reference, missense
rs111701596 -- 30,955,653(+) GCCCC(C/G)AGGGC nc-transcript-variant, upstream-variant-2KB
rs112101060 -- 30,952,574(+) AGTTA(C/T)AGGGA intron-variant
rs112148530 -- 30,949,705(+) AACCA(C/T)ATCAT intron-variant, upstream-variant-2KB, reference, missense
rs112394078 -- 30,955,622(+) CCTCG(A/G)GGAGT nc-transcript-variant, upstream-variant-2KB

Relevant External Links for HCG21 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
HCG21

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for HCG21 Gene

Disorders for HCG21 Gene

Relevant External Links for HCG21

Atlas of Genetics and Cytogenetics in Oncology and Haematology:
HCG21

No disorders were found for HCG21 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for HCG21 Gene

Publications for HCG21 Gene

No publications were found for HCG21 Gene.

Products for HCG21 Gene

Sources for HCG21 Gene

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