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Aliases for HCG21 Gene

Subcategory (RNA class) for HCG21 Gene

non-coding RNA

Quality Score for this RNA gene is

3

Aliases for HCG21 Gene

  • HLA Complex Group 21 (Non-Protein Coding) 2 3 5
  • Non-Protein Coding RNA 150 2
  • NCRNA00150 3

External Ids for HCG21 Gene

Previous GeneCards Identifiers for HCG21 Gene

  • GC00U915704
  • GC06U900758
  • GC06M030914

Summaries for HCG21 Gene

GeneCards Summary for HCG21 Gene

HCG21 (HLA Complex Group 21 (Non-Protein Coding)) is an RNA Gene, and is affiliated with the non-coding RNA class.

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for HCG21 Gene

Genomics for HCG21 Gene

Regulatory Elements for HCG21 Gene

Enhancers for HCG21 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH06G030981 1 Ensembl ENCODE 33.8 -26.6 -26557 0.7 CTCF TEAD4 RBBP5 ZNF2 RAD21 ZFHX2 GLIS2 ZNF366 PRDM10 EGR2 HCG21 DPCR1 VARS2 GTF2H4 DDR1 MUC21 LOC100420530
GH06G030777 2.1 FANTOM5 Ensembl ENCODE dbSUPER 10.3 +173.4 173355 10.1 CREB3L1 MLX ZFP64 DMAP1 FEZF1 YY1 SLC30A9 ZNF263 SP3 NFYC IER3 PPP1R10 PAIP1P1 VARS2 LY6G5B GTF2H4 DHX16 NFKBIL1 DDR1 ETF1P1
GH06G030757 2.1 FANTOM5 Ensembl ENCODE dbSUPER 9.7 +191.4 191402 14.0 MLX CREB3L1 AGO1 ZFP64 FEZF1 DMAP1 YY1 SLC30A9 ZNF143 ZNF263 IER3 VARS2 DDR1 C6orf136 PPP1R18 FLOT1 HCG18 LINC00243 PRR3 TUBB
GH06G030746 2.1 FANTOM5 Ensembl ENCODE dbSUPER 9.7 +204.3 204293 9.5 CREB3L1 MLX AGO1 ZFP64 DMAP1 FEZF1 YY1 SLC30A9 ZNF143 ZNF548 IER3 DHX16 LY6G5B GTF2H4 DDX39B PPP1R10 PAIP1P1 ABCF1 HLA-K VARS2
GH06G031007 0.9 Ensembl ENCODE 22.1 -52.2 -52249 1.0 CTCF ZNF362 JUND BHLHE40 SIN3A FOS RAD21 EZH2 HCG21 MUC22 DPCR1 LY6G5C PSORS1C1 GC06P031175
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around HCG21 on UCSC Golden Path with GeneCards custom track

Promoters for HCG21 Gene
Ensembl Regulatory Elements (ENSRs) TSS Distance (bp) Size (bp) Binding Sites for Transcription Factors within promoters
ENSR00000195473 20 201 PKNOX1 ATF1 CREB3L1 TCF12 ELK1 ZNF143 KDM4B ZNF263 NCOA1 REST

Genomic Location for HCG21 Gene

Chromosome:
6
Start:
30,945,979 bp from pter
End:
30,955,720 bp from pter
Size:
9,742 bases
Orientation:
Minus strand

Genomic View for HCG21 Gene

Genes around HCG21 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
HCG21 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for HCG21 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for HCG21 Gene

Proteins for HCG21 Gene

Post-translational modifications for HCG21 Gene

No Post-translational modifications

No data available for DME Specific Peptides for HCG21 Gene

Domains & Families for HCG21 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for HCG21 Gene

Function for HCG21 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for HCG21 Gene

Localization for HCG21 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for HCG21 Gene

Pathways & Interactions for HCG21 Gene

SuperPathways for HCG21 Gene

No Data Available

Interacting Proteins for HCG21 Gene

Gene Ontology (GO) - Biological Process for HCG21 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for HCG21 Gene

Drugs & Compounds for HCG21 Gene

No Compound Related Data Available

Transcripts for HCG21 Gene

mRNA/cDNA for HCG21 Gene

(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for HCG21 Gene

No ASD Table

Relevant External Links for HCG21 Gene

GeneLoc Exon Structure for
HCG21
ECgene alternative splicing isoforms for
HCG21

Expression for HCG21 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for HCG21 Gene

mRNA differential expression in normal tissues according to GTEx for HCG21 Gene

This gene is overexpressed in Stomach (x37.0) and Esophagus - Mucosa (x5.2).

NURSA nuclear receptor signaling pathways regulating expression of HCG21 Gene:

HCG21
genes like me logo Genes that share expression patterns with HCG21: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for HCG21 Gene

Orthologs for HCG21 Gene

Evolution for HCG21 Gene

ENSEMBL:
Gene Tree for HCG21 (if available)
TreeFam:
Gene Tree for HCG21 (if available)

No data available for Orthologs for HCG21 Gene

Paralogs for HCG21 Gene

No data available for Paralogs for HCG21 Gene

Variants for HCG21 Gene

Sequence variations from dbSNP and Humsavar for HCG21 Gene

SNP ID Clin Chr 06 pos Sequence Context AA Info Type
rs1000631747 -- 30,952,726(+) GAAAG(G/T)GTGTG intron-variant
rs1001103911 -- 30,947,837(+) ATCAC(C/T)GAAAT intron-variant, nc-transcript-variant
rs1001154652 -- 30,948,278(+) TAGAC(A/G)GATCA intron-variant, nc-transcript-variant
rs1001363225 -- 30,955,752(+) CTCCA(A/G/T)GTTCC upstream-variant-2KB
rs1001694888 -- 30,949,606(+) GCCTA(C/T)AGAAC intron-variant, upstream-variant-2KB, reference, missense

Relevant External Links for HCG21 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
HCG21

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for HCG21 Gene

Disorders for HCG21 Gene

Relevant External Links for HCG21

Atlas of Genetics and Cytogenetics in Oncology and Haematology:
HCG21

No disorders were found for HCG21 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for HCG21 Gene

Publications for HCG21 Gene

No publications were found for HCG21 Gene.

Products for HCG21 Gene

Sources for HCG21 Gene

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