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Aliases for HCG20 Gene

Subcategory (RNA class) for HCG20 Gene

non-coding RNA

Quality Score for this RNA gene is

3

Aliases for HCG20 Gene

  • HLA Complex Group 20 (Non-Protein Coding) 2 3 5
  • Non-Protein Coding RNA 149 2
  • NCRNA00149 3

External Ids for HCG20 Gene

Previous GeneCards Identifiers for HCG20 Gene

  • GC00U915703
  • GC06U900757
  • GC06P030735
  • GC06P030736
  • GC06P030766
  • GC06P030857
  • GC06P030869
  • GC06P030917

Summaries for HCG20 Gene

GeneCards Summary for HCG20 Gene

HCG20 (HLA Complex Group 20 (Non-Protein Coding)) is an RNA Gene, and is affiliated with the non-coding RNA class.

Additional gene information for HCG20 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for HCG20 Gene

Genomics for HCG20 Gene

Regulatory Elements for HCG20 Gene

Enhancers for HCG20 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH06H030777 2.1 FANTOM5 Ensembl ENCODE dbSUPER 10.2 +37.9 37875 10 MLX ZFP64 DMAP1 YY1 SLC30A9 SP3 NFYC PPARGC1A MEF2D SSRP1 IER3 VARS2 PPP1R10 MDC1 DDX39B GTF2H4 ENSG00000233892 LY6G5B ETF1P1 TRIM39
GH06H030757 2.1 FANTOM5 Ensembl ENCODE dbSUPER 9.2 +19.8 19828 13 MLX ZFP64 FEZF1 DMAP1 YY1 SLC30A9 SP3 NFYC MEF2D SSRP1 IER3 VARS2 MDC1 PPP1R10 DDR1 C6orf136 PPP1R18 MSH5 FLOT1 ENSG00000237669
GH06H030787 1.8 FANTOM5 Ensembl ENCODE dbSUPER 10.5 +44.2 44161 1 ELF3 TBP ARID4B RARA CREM MIXL1 THAP11 SMARCA5 SP5 CEBPB IER3 VARS2 FLOT1 DDR1 DDR1-AS1 HLA-L GTF2H4 DPCR1 HCG20 HCG21
GH06H030792 1.7 FANTOM5 Ensembl ENCODE dbSUPER 10.9 +49.4 49365 2 ELF3 TBL1XR1 ZBTB40 RARA RFX5 ZNF207 ATF7 RUNX3 IKZF2 SMARCA5 IER3 VARS2 FLOT1 LINC00243 DDR1 DDR1-AS1 GTF2H4 HCG20 DPCR1 HLA-E
GH06H030746 2 FANTOM5 Ensembl ENCODE dbSUPER 6.8 +6.9 6937 9 PKNOX1 FOXA2 ARID4B SIN3A FEZF1 ZNF2 ZNF766 FOS DEK PAF1 MDC1 IER3 GTF2H4 ENSG00000233892 LY6G5B DHX16 DDX39B TRIM39 PPP1R10 HLA-K
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around HCG20 on UCSC Golden Path with GeneCards custom track

Promoters for HCG20 Gene
Ensembl Regulatory Elements (ENSRs) TSS Distance (bp) Size (bp) Binding Sites for Transcription Factors within promoters
ENSR00000195435 -1191 2601 MLX ZFP64 FEZF1 DMAP1 YY1 SLC30A9 ZNF143 SP3 NFYC MEF2D

Genomic Location for HCG20 Gene

Chromosome:
6
Start:
30,744,491 bp from pter
End:
30,792,250 bp from pter
Size:
47,760 bases
Orientation:
Plus strand

Genomic View for HCG20 Gene

Genes around HCG20 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
HCG20 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for HCG20 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

Proteins for HCG20 Gene

Post-translational modifications for HCG20 Gene

No Post-translational modifications

No data available for DME Specific Peptides for HCG20 Gene

Domains & Families for HCG20 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for HCG20 Gene

Function for HCG20 Gene

Phenotypes From GWAS Catalog for HCG20 Gene

Animal Model Products

CRISPR Products

Clone Products

  • Applied Biological Materials Clones for HCG20
  • Vectors and viruses for ORF, Lenti, Retro, Adenovirus, AAV, and more

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for HCG20 Gene

Localization for HCG20 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for HCG20 Gene

Pathways & Interactions for HCG20 Gene

SuperPathways for HCG20 Gene

No Data Available

Interacting Proteins for HCG20 Gene

Gene Ontology (GO) - Biological Process for HCG20 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for HCG20 Gene

Drugs & Compounds for HCG20 Gene

No Compound Related Data Available

Transcripts for HCG20 Gene

mRNA/cDNA for HCG20 Gene

(2) Ensembl transcripts including schematic representations, and UCSC links where relevant :

CRISPR Products

Clone Products

  • Applied Biological Materials Clones for HCG20
  • Vectors and viruses for ORF, Lenti, Retro, Adenovirus, AAV, and more

Alternative Splicing Database (ASD) splice patterns (SP) for HCG20 Gene

No ASD Table

Relevant External Links for HCG20 Gene

GeneLoc Exon Structure for
HCG20
ECgene alternative splicing isoforms for
HCG20

Expression for HCG20 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for HCG20 Gene

mRNA differential expression in normal tissues according to GTEx for HCG20 Gene

This gene is overexpressed in Liver (x4.7).

NURSA nuclear receptor signaling pathways regulating expression of HCG20 Gene:

HCG20
genes like me logo Genes that share expression patterns with HCG20: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for HCG20 Gene

Orthologs for HCG20 Gene

Evolution for HCG20 Gene

ENSEMBL:
Gene Tree for HCG20 (if available)
TreeFam:
Gene Tree for HCG20 (if available)

No data available for Orthologs for HCG20 Gene

Paralogs for HCG20 Gene

No data available for Paralogs for HCG20 Gene

Variants for HCG20 Gene

Sequence variations from dbSNP and Humsavar for HCG20 Gene

SNP ID Clin Chr 06 pos Sequence Context AA Info Type
rs1000041318 -- 30,779,263(+) ACTCC(A/G)TCTCA intron-variant
rs1000151222 -- 30,777,825(+) CTACT(A/G)AAAAT intron-variant
rs1000214172 -- 30,743,854(+) GTTGG(A/G)GATAC downstream-variant-500B, upstream-variant-2KB, utr-variant-3-prime
rs1000221621 -- 30,769,991(+) CACCA(A/G)TAATT intron-variant
rs1000348532 -- 30,762,942(+) GAGTT(C/G)AAGAC intron-variant

Relevant External Links for HCG20 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
HCG20

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for HCG20 Gene

Disorders for HCG20 Gene

Relevant External Links for HCG20

Atlas of Genetics and Cytogenetics in Oncology and Haematology:
HCG20

No disorders were found for HCG20 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for HCG20 Gene

Publications for HCG20 Gene

No publications were found for HCG20 Gene.

Products for HCG20 Gene

Sources for HCG20 Gene

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