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Aliases for HCG20 Gene

Subcategory (RNA class) for HCG20 Gene

non-coding RNA

Quality Score for this RNA gene is

3

Aliases for HCG20 Gene

  • HLA Complex Group 20 (Non-Protein Coding) 2 3 5
  • Non-Protein Coding RNA 149 2
  • NCRNA00149 3

External Ids for HCG20 Gene

Previous GeneCards Identifiers for HCG20 Gene

  • GC00U915703
  • GC06U900757
  • GC06P030735
  • GC06P030736
  • GC06P030766
  • GC06P030857

Summaries for HCG20 Gene

GeneCards Summary for HCG20 Gene

HCG20 (HLA Complex Group 20 (Non-Protein Coding)) is an RNA Gene, and is affiliated with the non-coding RNA class.

No data available for Entrez Gene Summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for HCG20 Gene

Genomics for HCG20 Gene

Regulatory Elements for HCG20 Gene

Enhancers for HCG20 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH06F030776 1.9 FANTOM5 Ensembl ENCODE 12 +38.8 38810 13.8 MLX CREB3L1 ZFP64 FEZF1 DMAP1 YY1 SLC30A9 ZNF143 ZNF263 SP3 IER3 PPP1R10 PAIP1P1 DHX16 LY6G5B GTF2H4 ABCF1 DDX39B VARS2 HCG18
GH06F030757 1.9 FANTOM5 Ensembl ENCODE 9.2 +19.8 19762 14.1 MLX CREB3L1 ZFP64 FEZF1 DMAP1 YY1 SLC30A9 ZNF143 ZNF263 SP3 IER3 VARS2 DDR1 C6orf136 PPP1R18 FLOT1 HCG18 LINC00243 PRR3 TUBB
GH06F030792 1.4 FANTOM5 Ensembl ENCODE 10.9 +49.5 49510 2.4 ELF3 TBP TBL1XR1 ZBTB40 RARA SMARCA5 JUNB ELF1 TBX21 SP1 IER3 VARS2 FLOT1 LINC00243 DDR1 DDR1-AS1 MIR4640 GTF2H4 HCG20 DPCR1
GH06F030746 1.9 FANTOM5 Ensembl ENCODE 6.8 +6.9 6937 9.5 MLX CREB3L1 ZFP64 DMAP1 FEZF1 YY1 SLC30A9 ZNF143 ZNF548 ZNF263 IER3 GTF2H4 PPP1R10 DHX16 LY6G5B MICA PAIP1P1 DDX39B ABCF1 HLA-K
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around HCG20 on UCSC Golden Path with GeneCards custom track

Promoters for HCG20 Gene
Ensembl Regulatory Elements (ENSRs) TSS Distance (bp) Size (bp) Binding Sites for Transcription Factors within promoters
ENSR00000487690 -1291 3601 MLX FEZF1 DMAP1 YY1 SLC30A9 ZNF143 ZNF263 SP3 NFYC MEF2D

Genomic Location for HCG20 Gene

Chromosome:
6
Start:
30,744,491 bp from pter
End:
30,792,250 bp from pter
Size:
47,760 bases
Orientation:
Plus strand

Genomic View for HCG20 Gene

Genes around HCG20 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
HCG20 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for HCG20 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

Proteins for HCG20 Gene

Post-translational modifications for HCG20 Gene

No Post-translational modifications

No data available for DME Specific Peptides for HCG20 Gene

Domains & Families for HCG20 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for HCG20 Gene

Function for HCG20 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for HCG20 Gene

Localization for HCG20 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for HCG20 Gene

Pathways & Interactions for HCG20 Gene

SuperPathways for HCG20 Gene

No Data Available

Interacting Proteins for HCG20 Gene

Gene Ontology (GO) - Biological Process for HCG20 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for HCG20 Gene

Transcripts for HCG20 Gene

mRNA/cDNA for HCG20 Gene

(2) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for HCG20 Gene

No ASD Table

Relevant External Links for HCG20 Gene

GeneLoc Exon Structure for
HCG20
ECgene alternative splicing isoforms for
HCG20

Expression for HCG20 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for HCG20 Gene

mRNA differential expression in normal tissues according to GTEx for HCG20 Gene

This gene is overexpressed in Liver (x4.7).

NURSA nuclear receptor signaling pathways regulating expression of HCG20 Gene:

HCG20
genes like me logo Genes that share expression patterns with HCG20: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners and mRNA Expression by UniProt/SwissProt for HCG20 Gene

Orthologs for HCG20 Gene

Evolution for HCG20 Gene

ENSEMBL:
Gene Tree for HCG20 (if available)
TreeFam:
Gene Tree for HCG20 (if available)

No data available for Orthologs for HCG20 Gene

Paralogs for HCG20 Gene

No data available for Paralogs for HCG20 Gene

Variants for HCG20 Gene

Sequence variations from dbSNP and Humsavar for HCG20 Gene

SNP ID Clin Chr 06 pos Sequence Context AA Info Type
rs1049942 -- 30,743,290(-) AGGTA(A/G)AGGGT nc-transcript-variant, upstream-variant-2KB, utr-variant-3-prime
rs1049943 -- 30,743,249(-) GTCGA(C/G)ATCGC nc-transcript-variant, upstream-variant-2KB, utr-variant-3-prime
rs10947091 -- 30,779,439(+) ttCTG(C/T)TATCT intron-variant, upstream-variant-2KB
rs10947095 -- 30,789,798(+) TGGAC(C/T)GGATT intron-variant
rs111281305 -- 30,784,817(+) ATCTC(-/A/AA/AAA)AAAAA intron-variant

Relevant External Links for HCG20 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
HCG20

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for HCG20 Gene

Disorders for HCG20 Gene

Relevant External Links for HCG20

Atlas of Genetics and Cytogenetics in Oncology and Haematology:
HCG20

No disorders were found for HCG20 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for HCG20 Gene

Publications for HCG20 Gene

No publications were found for HCG20 Gene.

Products for HCG20 Gene

Sources for HCG20 Gene

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