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Aliases for HCG20 Gene

Subcategory (RNA class) for HCG20 Gene

non-coding RNA

Quality Score for this RNA gene is

3

Aliases for HCG20 Gene

  • HLA Complex Group 20 (Non-Protein Coding) 2 3 5
  • Non-Protein Coding RNA 149 2
  • NCRNA00149 3

External Ids for HCG20 Gene

Previous GeneCards Identifiers for HCG20 Gene

  • GC00U915703
  • GC06U900757
  • GC06P030735
  • GC06P030736
  • GC06P030766

Summaries for HCG20 Gene

GeneCards Summary for HCG20 Gene

HCG20 (HLA Complex Group 20 (Non-Protein Coding)) is an RNA Gene, and is affiliated with the non-coding RNA class.

No data available for Entrez Gene Summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for HCG20 Gene

Genomics for HCG20 Gene

Regulatory Elements for HCG20 Gene

Enhancers for HCG20 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
- Elite enhancer/Elite enhancer-gene association

Enhancers around HCG20 on UCSC Golden Path with GeneCards custom track

Promoters for HCG20 Gene
Ensembl Regulatory Elements (ENSRs) TSS Distance (bp) Size (bp) Binding Sites for Transcription Factors within promoters

ENSRs around HCG20 on UCSC Golden Path with GeneCards custom track

Genomic Location for HCG20 Gene

Chromosome:
6
Start:
30,744,491 bp from pter
End:
30,792,250 bp from pter
Size:
47,760 bases
Orientation:
Plus strand

Genomic View for HCG20 Gene

Genes around HCG20 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
HCG20 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for HCG20 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

Proteins for HCG20 Gene

Post-translational modifications for HCG20 Gene

No Post-translational modifications

No data available for DME Specific Peptides for HCG20 Gene

Domains & Families for HCG20 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for HCG20 Gene

Function for HCG20 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for HCG20 Gene

Localization for HCG20 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for HCG20 Gene

Pathways & Interactions for HCG20 Gene

SuperPathways for HCG20 Gene

No Data Available

Interacting Proteins for HCG20 Gene

Gene Ontology (GO) - Biological Process for HCG20 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for HCG20 Gene

Drugs & Compounds for HCG20 Gene

No Compound Related Data Available

Transcripts for HCG20 Gene

mRNA/cDNA for HCG20 Gene

(2) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for HCG20 Gene

No ASD Table

Relevant External Links for HCG20 Gene

GeneLoc Exon Structure for
HCG20
ECgene alternative splicing isoforms for
HCG20

Expression for HCG20 Gene

mRNA expression in normal human tissues for HCG20 Gene

mRNA differential expression in normal tissues according to GTEx for HCG20 Gene

This gene is overexpressed in Liver (x4.7).

NURSA nuclear receptor signaling pathways regulating expression of HCG20 Gene:

HCG20
genes like me logo Genes that share expression patterns with HCG20: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners and mRNA Expression by UniProt/SwissProt for HCG20 Gene

Orthologs for HCG20 Gene

Evolution for HCG20 Gene

ENSEMBL:
Gene Tree for HCG20 (if available)
TreeFam:
Gene Tree for HCG20 (if available)

No data available for Orthologs for HCG20 Gene

Paralogs for HCG20 Gene

No data available for Paralogs for HCG20 Gene

Variants for HCG20 Gene

Sequence variations from dbSNP and Humsavar for HCG20 Gene

SNP ID Clin Chr 06 pos Sequence Context AA Info Type
rs4711228 -- 30,788,497(+) CAGTG(A/T)TGCAT intron-variant
rs4711229 -- 30,788,967(+) AGCTG(G/T)TTGTT intron-variant
rs4711230 -- 30,789,269(+) AATTT(C/T)CGTAT intron-variant
rs4711231 -- 30,789,295(+) GGTTT(C/T)GCAAT intron-variant
rs4713358 -- 30,748,340(+) TAAAA(G/T)GATTT intron-variant

Relevant External Links for HCG20 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
HCG20

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for HCG20 Gene

Disorders for HCG20 Gene

No disorders were found for HCG20 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for HCG20 Gene

Publications for HCG20 Gene

No publications were found for HCG20 Gene.

Products for HCG20 Gene

Sources for HCG20 Gene

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