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Aliases for HCG18 Gene

Subcategory (RNA class) for HCG18 Gene

non-coding RNA

Quality Score for this RNA gene is

3

Aliases for HCG18 Gene

  • HLA Complex Group 18 (Non-Protein Coding) 2 3 5
  • HLA Complex Group 18 2

External Ids for HCG18 Gene

Previous GeneCards Identifiers for HCG18 Gene

  • GC00U915705
  • GC06U900759
  • GC06M030259
  • GC06M030053

Summaries for HCG18 Gene

GeneCards Summary for HCG18 Gene

HCG18 (HLA Complex Group 18 (Non-Protein Coding)) is an RNA Gene, and is affiliated with the non-coding RNA class.

No data available for Entrez Gene Summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for HCG18 Gene

Genomics for HCG18 Gene

Regulatory Elements for HCG18 Gene

Promoters for HCG18 Gene
Ensembl Regulatory Elements (ENSRs) TSS Distance (bp) Size (bp) Binding Sites for Transcription Factors within promoters

ENSRs around HCG18 on UCSC Golden Path with GeneCards custom track

Genomic Location for HCG18 Gene

Chromosome:
6
Start:
30,287,397 bp from pter
End:
30,327,156 bp from pter
Size:
39,760 bases
Orientation:
Minus strand

Genomic View for HCG18 Gene

Genes around HCG18 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
HCG18 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for HCG18 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

Proteins for HCG18 Gene

Post-translational modifications for HCG18 Gene

No Post-translational modifications

No data available for DME Specific Peptides for HCG18 Gene

Domains & Families for HCG18 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for HCG18 Gene

Function for HCG18 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for HCG18 Gene

Localization for HCG18 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for HCG18 Gene

Pathways & Interactions for HCG18 Gene

SuperPathways for HCG18 Gene

No Data Available

Interacting Proteins for HCG18 Gene

Gene Ontology (GO) - Biological Process for HCG18 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for HCG18 Gene

Drugs & Compounds for HCG18 Gene

No Compound Related Data Available

Transcripts for HCG18 Gene

mRNA/cDNA for HCG18 Gene

(9) Additional mRNA sequences :
(16) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Unigene Clusters for HCG18 Gene

HLA complex group 18 (non-protein coding):
Representative Sequences:

Alternative Splicing Database (ASD) splice patterns (SP) for HCG18 Gene

No ASD Table

Relevant External Links for HCG18 Gene

GeneLoc Exon Structure for
HCG18
ECgene alternative splicing isoforms for
HCG18

Expression for HCG18 Gene

mRNA expression in normal human tissues for HCG18 Gene

SOURCE GeneReport for Unigene cluster for HCG18 Gene Hs.485041

genes like me logo Genes that share expression patterns with HCG18: view

In Situ Assay Products

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , mRNA Expression by UniProt/SwissProt and Protein tissue co-expression partners for HCG18 Gene

Orthologs for HCG18 Gene

Evolution for HCG18 Gene

ENSEMBL:
Gene Tree for HCG18 (if available)
TreeFam:
Gene Tree for HCG18 (if available)

No data available for Orthologs for HCG18 Gene

Paralogs for HCG18 Gene

No data available for Paralogs for HCG18 Gene

Variants for HCG18 Gene

Sequence variations from dbSNP and Humsavar for HCG18 Gene

SNP ID Clin Chr 06 pos Sequence Context AA Info Type
rs530176380 -- 30,314,628(+) TTTTG(-/T)TAACA intron-variant
rs189747435 -- 30,302,909(+) AAATT(A/G)GGAGA intron-variant
rs546772440 -- 30,289,960(+) GGGAG(A/G)TATTT intron-variant, nc-transcript-variant
rs775740864 -- 30,287,121(+) CACCA(C/G)ACTGC downstream-variant-500B
rs765027083 -- 30,317,062(+) AAAAC(A/G)TATTA intron-variant

Structural Variations from Database of Genomic Variants (DGV) for HCG18 Gene

Variant ID Type Subtype PubMed ID
nsv884062 CNV Loss 21882294

Relevant External Links for HCG18 Gene

HapMap Linkage Disequilibrium report
HCG18

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for HCG18 Gene

Disorders for HCG18 Gene

Relevant External Links for HCG18

Genetic Association Database (GAD)
HCG18
Atlas of Genetics and Cytogenetics in Oncology and Haematology:
HCG18

No disorders were found for HCG18 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for HCG18 Gene

Publications for HCG18 Gene

  1. Genome-wide association study identifies variants in the MHC class I, IL10, and IL23R-IL12RB2 regions associated with BehAset's disease. (PMID: 20622878) Remmers E.F. … GA1l A. (Nat. Genet. 2010) 48 67
  2. Diversification of transcriptional modulation: large-scale identification and characterization of putative alternative promoters of human genes. (PMID: 16344560) Kimura K. … Sugano S. (Genome Res. 2006) 3
  3. Complete sequencing and characterization of 21,243 full-length human cDNAs. (PMID: 14702039) Ota T. … Sugano S. (Nat. Genet. 2004) 3
  4. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg R.L. … Marra M.A. (Proc. Natl. Acad. Sci. U.S.A. 2002) 3

Products for HCG18 Gene

Sources for HCG18 Gene

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