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Aliases for HCG17 Gene

Subcategory (RNA class) for HCG17 Gene

non-coding RNA

Quality Score for this RNA gene is

3

Aliases for HCG17 Gene

  • HLA Complex Group 17 (Non-Protein Coding) 2 3 5
  • Long Intergenic Non-Protein Coding RNA 46 2 3
  • Non-Protein Coding RNA 46 2
  • NCRNA00046 3
  • LINC00046 3
  • HCG18 3

External Ids for HCG17 Gene

Previous GeneCards Identifiers for HCG17 Gene

  • GC00U915706
  • GC06U900760
  • GC06M030202

Summaries for HCG17 Gene

GeneCards Summary for HCG17 Gene

HCG17 (HLA Complex Group 17 (Non-Protein Coding)) is an RNA Gene, and is affiliated with the non-coding RNA class.

No data available for Entrez Gene Summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for HCG17 Gene

Genomics for HCG17 Gene

Regulatory Elements for HCG17 Gene

Enhancers for HCG17 Gene
GeneHancer Identifier Score Enhancer Sources TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Other Gene Targets for Enhancer

Enhancers around HCG17 on UCSC Golden Path with GeneCards custom track

Promoters for HCG17 Gene
Ensembl Regulatory Elements (ENSRs) TSS Distance (bp) Size (bp) Binding Sites for Transcription Factors within promoters

ENSRs around HCG17 on UCSC Golden Path with GeneCards custom track

Genomic Location for HCG17 Gene

Chromosome:
6
Start:
30,234,039 bp from pter
End:
30,326,134 bp from pter
Size:
92,096 bases
Orientation:
Minus strand

Genomic View for HCG17 Gene

Genes around HCG17 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
HCG17 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for HCG17 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

Proteins for HCG17 Gene

Post-translational modifications for HCG17 Gene

No Post-translational modifications

No data available for DME Specific Peptides for HCG17 Gene

Domains & Families for HCG17 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for HCG17 Gene

Function for HCG17 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for HCG17 Gene

Localization for HCG17 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for HCG17 Gene

Pathways & Interactions for HCG17 Gene

SuperPathways for HCG17 Gene

No Data Available

Interacting Proteins for HCG17 Gene

Gene Ontology (GO) - Biological Process for HCG17 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for HCG17 Gene

Drugs & Compounds for HCG17 Gene

No Compound Related Data Available

Transcripts for HCG17 Gene

mRNA/cDNA for HCG17 Gene

(2) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for HCG17 Gene

No ASD Table

Relevant External Links for HCG17 Gene

GeneLoc Exon Structure for
HCG17
ECgene alternative splicing isoforms for
HCG17

Expression for HCG17 Gene

mRNA expression in normal human tissues for HCG17 Gene

genes like me logo Genes that share expression patterns with HCG17: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , mRNA Expression by UniProt/SwissProt and Protein tissue co-expression partners for HCG17 Gene

Orthologs for HCG17 Gene

Evolution for HCG17 Gene

ENSEMBL:
Gene Tree for HCG17 (if available)
TreeFam:
Gene Tree for HCG17 (if available)

No data available for Orthologs for HCG17 Gene

Paralogs for HCG17 Gene

No data available for Paralogs for HCG17 Gene

Variants for HCG17 Gene

Sequence variations from dbSNP and Humsavar for HCG17 Gene

SNP ID Clin Chr 06 pos Sequence Context AA Info Type
rs1052899 -- 30,285,330(-) AATGA(A/T)AAAGG intron-variant
rs1075105 -- 30,283,609(-) ggaga(C/G)tattt intron-variant
rs1132547 -- 30,285,562(-) aatgg(A/C)aatat intron-variant
rs1158763 -- 30,272,297(-) tgtgc(A/G)cagca intron-variant
rs1264626 -- 30,285,234(-) tgatt(A/G)gatca intron-variant

Relevant External Links for HCG17 Gene

HapMap Linkage Disequilibrium report
HCG17

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for HCG17 Gene

Disorders for HCG17 Gene

Relevant External Links for HCG17

Atlas of Genetics and Cytogenetics in Oncology and Haematology:
HCG17

No disorders were found for HCG17 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for HCG17 Gene

Publications for HCG17 Gene

  1. Genome wide association study (GWAS) of Chagas cardiomyopathy in Trypanosoma cruzi seropositive subjects. (PMID: 24324551) Deng X. … Seielstad M. (PLoS ONE 2013) 3 67
  2. Normalization and subtraction: two approaches to facilitate gene discovery. (PMID: 8889548) Bonaldo M.F. … Soares M.B. (Genome Res. 1996) 3

Products for HCG17 Gene

Sources for HCG17 Gene

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