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Aliases for HCG17 Gene

Subcategory (RNA class) for HCG17 Gene

non-coding RNA

Quality Score for this RNA gene is

3

Aliases for HCG17 Gene

  • HLA Complex Group 17 (Non-Protein Coding) 2 3 5
  • Long Intergenic Non-Protein Coding RNA 46 2 3
  • Non-Protein Coding RNA 46 2
  • NCRNA00046 3
  • LINC00046 3
  • HCG18 3

External Ids for HCG17 Gene

Previous GeneCards Identifiers for HCG17 Gene

  • GC00U915706
  • GC06U900760
  • GC06M030202

Summaries for HCG17 Gene

GeneCards Summary for HCG17 Gene

HCG17 (HLA Complex Group 17 (Non-Protein Coding)) is an RNA Gene, and is affiliated with the non-coding RNA class.

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for HCG17 Gene

Genomics for HCG17 Gene

Regulatory Elements for HCG17 Gene

Enhancers for HCG17 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH06G030746 2.1 FANTOM5 Ensembl ENCODE dbSUPER 20.6 -425.3 -425294 9.5 CREB3L1 MLX AGO1 ZFP64 DMAP1 FEZF1 YY1 SLC30A9 ZNF143 ZNF548 IER3 DHX16 LY6G5B GTF2H4 DDX39B PPP1R10 PAIP1P1 ABCF1 HLA-K VARS2
GH06G031196 1.4 ENCODE dbSUPER 19.1 -871.8 -871764 3.1 CREB3L1 DMAP1 YY1 ZNF143 ZNF548 ZNF263 SP3 NFYC TBX21 ZNF610 PSORS1C3 ENSG00000272501 POU5F1 PSORS1C2 PRRT1 HLA-C GNL1 EHMT2 CCHCR1 HCG17
GH06G030324 1.4 ENCODE dbSUPER 18.5 -0.3 -294 3.5 HDGF PKNOX1 CREB3L1 ARNT ARID4B SIN3A YBX1 FEZF1 DMAP1 ZNF2 HCG18 HCG17 RPL23AP1 MICD GABBR1 HLA-E GTF2H4 ZNRD1ASP GNL1 ZFP57
GH06G031137 1.3 Ensembl ENCODE 19.2 -811.6 -811568 0.6 HDGF PKNOX1 ATF1 ARNT ZNF493 ARID4B DMAP1 ZNF2 ZNF48 ZNF121 HCG18 LSM2 LY6G5B NFKBIL1 GTF2H4 PSORS1C2 DDX39B ATF6B PSORS1C1 RPL3P2
GH06G030777 2.1 FANTOM5 Ensembl ENCODE dbSUPER 11.2 -456.2 -456232 10.1 CREB3L1 MLX ZFP64 DMAP1 FEZF1 YY1 SLC30A9 ZNF263 SP3 NFYC IER3 PPP1R10 PAIP1P1 VARS2 LY6G5B GTF2H4 DHX16 NFKBIL1 DDR1 ETF1P1
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around HCG17 on UCSC Golden Path with GeneCards custom track

Promoters for HCG17 Gene
Ensembl Regulatory Elements (ENSRs) TSS Distance (bp) Size (bp) Binding Sites for Transcription Factors within promoters
ENSR00000195385 -366 2201 HDGF PKNOX1 CREB3L1 ARNT ARID4B SIN3A YBX1 FEZF1 DMAP1 ZNF2

Genomic Location for HCG17 Gene

Chromosome:
6
Start:
30,234,039 bp from pter
End:
30,326,134 bp from pter
Size:
92,096 bases
Orientation:
Minus strand

Genomic View for HCG17 Gene

Genes around HCG17 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
HCG17 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for HCG17 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

Proteins for HCG17 Gene

Post-translational modifications for HCG17 Gene

No Post-translational modifications

No data available for DME Specific Peptides for HCG17 Gene

Domains & Families for HCG17 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for HCG17 Gene

Function for HCG17 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for HCG17 Gene

Localization for HCG17 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for HCG17 Gene

Pathways & Interactions for HCG17 Gene

SuperPathways for HCG17 Gene

No Data Available

Interacting Proteins for HCG17 Gene

Gene Ontology (GO) - Biological Process for HCG17 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for HCG17 Gene

Transcripts for HCG17 Gene

mRNA/cDNA for HCG17 Gene

(2) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for HCG17 Gene

No ASD Table

Relevant External Links for HCG17 Gene

GeneLoc Exon Structure for
HCG17
ECgene alternative splicing isoforms for
HCG17

Expression for HCG17 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for HCG17 Gene

NURSA nuclear receptor signaling pathways regulating expression of HCG17 Gene:

HCG17
genes like me logo Genes that share expression patterns with HCG17: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for HCG17 Gene

Orthologs for HCG17 Gene

Evolution for HCG17 Gene

ENSEMBL:
Gene Tree for HCG17 (if available)
TreeFam:
Gene Tree for HCG17 (if available)

No data available for Orthologs for HCG17 Gene

Paralogs for HCG17 Gene

No data available for Paralogs for HCG17 Gene

Variants for HCG17 Gene

Sequence variations from dbSNP and Humsavar for HCG17 Gene

SNP ID Clin Chr 06 pos Sequence Context AA Info Type
rs1000078658 -- 30,298,192(+) AGGGA(C/T)TGCTG intron-variant
rs1000125212 -- 30,245,966(+) GACTT(C/T)TTTTG intron-variant
rs1000160285 -- 30,270,193(+) ATGGC(A/G)AAAGT intron-variant
rs1000183297 -- 30,256,804(+) TAAGG(A/C)ATTCT intron-variant
rs1000187876 -- 30,310,481(+) GAGAC(A/C)ATCCT intron-variant

Structural Variations from Database of Genomic Variants (DGV) for HCG17 Gene

Variant ID Type Subtype PubMed ID
esv2428476 CNV deletion 19546169
esv2657403 CNV deletion 23128226
esv2731777 CNV deletion 23290073
esv2731781 CNV deletion 23290073
esv2731782 CNV deletion 23290073
esv2731783 CNV deletion 23290073
esv2731785 CNV deletion 23290073
esv2731786 CNV deletion 23290073
esv3303361 CNV mobile element insertion 20981092
esv3308985 CNV mobile element insertion 20981092
esv3411275 CNV duplication 20981092
esv3415851 CNV insertion 20981092
esv3567506 CNV deletion 23714750
esv3608505 CNV loss 21293372
nsv1074389 CNV deletion 25765185
nsv1122126 CNV deletion 24896259
nsv1144137 CNV deletion 24896259
nsv601264 CNV loss 21841781

Relevant External Links for HCG17 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
HCG17

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for HCG17 Gene

Disorders for HCG17 Gene

Relevant External Links for HCG17

Atlas of Genetics and Cytogenetics in Oncology and Haematology:
HCG17

No disorders were found for HCG17 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for HCG17 Gene

Publications for HCG17 Gene

  1. Genome wide association study (GWAS) of Chagas cardiomyopathy in Trypanosoma cruzi seropositive subjects. (PMID: 24324551) Deng X. … Seielstad M. (PLoS ONE 2013) 3 64
  2. Normalization and subtraction: two approaches to facilitate gene discovery. (PMID: 8889548) Bonaldo M.F. … Soares M.B. (Genome Res. 1996) 3 64

Products for HCG17 Gene

Sources for HCG17 Gene

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