Free for academic non-profit institutions. Other users need a Commercial license

Aliases for HCG17 Gene

Subcategory (RNA class) for HCG17 Gene


Quality Score for this RNA gene is


Aliases for HCG17 Gene

  • HLA Complex Group 17 (Non-Protein Coding) 2 3
  • Long Intergenic Non-Protein Coding RNA 46 2 3
  • Non-Protein Coding RNA 46 2
  • NCRNA00046 3
  • LINC00046 3

External Ids for HCG17 Gene

Previous GeneCards Identifiers for HCG17 Gene

  • GC00U915706
  • GC06U900760
  • GC06M030202

Summaries for HCG17 Gene

GeneCards Summary for HCG17 Gene

HCG17 (HLA Complex Group 17 (Non-Protein Coding)) is an RNA Gene, and is affiliated with the lncRNA class.

No data available for Entrez Gene Summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for HCG17 Gene

Genomics for HCG17 Gene

Genomic Location for HCG17 Gene

30,234,039 bp from pter
30,326,134 bp from pter
92,096 bases
Minus strand

Genomic View for HCG17 Gene

UCSC Golden Path with GeneCards custom track
Cytogenetic band:
Genomic Location for HCG17 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

No data available for Regulatory Elements for HCG17 Gene

Proteins for HCG17 Gene

Post-translational modifications for HCG17 Gene

No Post-translational modifications

No data available for DME Specific Peptides for HCG17 Gene

Domains for HCG17 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for HCG17 Gene

Function for HCG17 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for HCG17 Gene

Localization for HCG17 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for HCG17 Gene

Pathways for HCG17 Gene

SuperPathways for HCG17 Gene

No Data Available

Interacting Proteins for HCG17 Gene

Gene Ontology (GO) - Biological Process for HCG17 Gene


No data available for Pathways by source for HCG17 Gene

Transcripts for HCG17 Gene

mRNA/cDNA for HCG17 Gene

(3) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for HCG17 Gene

No ASD Table

Relevant External Links for HCG17 Gene

GeneLoc Exon Structure for
ECgene alternative splicing isoforms for

Expression for HCG17 Gene

mRNA expression in normal human tissues for HCG17 Gene

genes like me logo Genes that share expressions with HCG17: view

Primer Products

In Situ Assay Products

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , mRNA Expression by UniProt/SwissProt and Expression partners for HCG17 Gene

Orthologs for HCG17 Gene

Evolution for HCG17 Gene

Gene Tree for HCG17 (if available)
Gene Tree for HCG17 (if available)

No data available for Orthologs for HCG17 Gene

Paralogs for HCG17 Gene

No data available for Paralogs for HCG17 Gene

Variants for HCG17 Gene

Sequence variations from dbSNP and Humsavar for HCG17 Gene

SNP ID Clin Chr 06 pos Sequence Context AA Info Type MAF
rs916568 -- 30,234,275(-) TTTTT(A/G)ACACA intron-variant
rs954037 -- 30,235,825(-) GGGGA(A/G)CTAGG intron-variant
rs954038 -- 30,235,882(-) TTAAA(A/G)AGAAA intron-variant
rs968909 -- 30,276,802(-) gacct(A/G)aaaat intron-variant
rs1052899 -- 30,285,330(-) AATGA(A/T)AAAGG intron-variant

Relevant External Links for HCG17 Gene

HapMap Linkage Disequilibrium report

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Structural Variations from Database of Genomic Variants (DGV) for HCG17 Gene

Disorders for HCG17 Gene

No disorders were found for HCG17 Gene.

No data available for MalaCards , OMIM , UniProtKB/Swiss-Prot , University of Copenhagen DISEASES , Novoseek inferred disease relationships , Genatlas and External Links for HCG17 Gene

Publications for HCG17 Gene

  1. Normalization and subtraction: two approaches to facilitate gene discovery. (PMID: 8889548) Bonaldo M.F. … Soares M.B. (Genome Res. 1996) 3
  2. Genome wide association study (GWAS) of Chagas cardiomyopathy in Trypanosoma cruzi seropositive subjects. (PMID: 24324551) Deng X. … Seielstad M. (PLoS ONE 2013) 3

Products for HCG17 Gene

Sources for HCG17 Gene

Back to Top