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Aliases for HCG17 Gene

Subcategory (RNA class) for HCG17 Gene

non-coding RNA

Quality Score for this RNA gene is

3

Aliases for HCG17 Gene

  • HLA Complex Group 17 (Non-Protein Coding) 2 3 5
  • Long Intergenic Non-Protein Coding RNA 46 2 3
  • Non-Protein Coding RNA 46 2
  • NCRNA00046 3
  • LINC00046 3
  • HCG18 3

External Ids for HCG17 Gene

Previous GeneCards Identifiers for HCG17 Gene

  • GC00U915706
  • GC06U900760
  • GC06M030202

Summaries for HCG17 Gene

GeneCards Summary for HCG17 Gene

HCG17 (HLA Complex Group 17 (Non-Protein Coding)) is an RNA Gene, and is affiliated with the non-coding RNA class.

No data available for Entrez Gene Summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for HCG17 Gene

Genomics for HCG17 Gene

Regulatory Elements for HCG17 Gene

Enhancers for HCG17 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH06F030324 0.5 ENCODE 10.5 -0.3 -294 3.5 HDGF PKNOX1 ARNT CREB3L1 ARID4B SIN3A FEZF1 DMAP1 YBX1 ZNF2 HCG18 RPL23AP1 MICD GABBR1 HLA-E HCG17 GNL1 ZFP57 HLA-G TRIM39
GH06F030162 0.9 ENCODE 9.8 +162.4 162369 2.8 HDGF PKNOX1 ARNT ZFP64 SIN3A ARID4B FEZF1 DMAP1 ZNF2 YY1 HCG18 GTF2H4 PPP1R10 ETF1P1 DHX16 PAIP1P1 HLA-U ZNRD1ASP HCG4P7 TCF19
GH06F030194 0.4 ENCODE 9.8 +130.8 130807 1.6 ZFP64 ARID4B DMAP1 YY1 SLC30A9 ZNF302 SP3 SP5 MXD4 ZHX2 HCG18 GTF2H4 PPP1R10 ETF1P1 DHX16 PAIP1P1 ZNRD1ASP HCG4P7 TRIM31 GNL1
GH06F031196 1.1 ENCODE 9.8 -871.8 -871764 3.1 HDGF PKNOX1 ARNT CREB3L1 ARID4B SIN3A DMAP1 ZNF2 YY1 CBX5 PSORS1C3 ENSG00000272501 POU5F1 PSORS1C2 DDX39B HLA-C ABCF1 LY6G5B DHX16 CCHCR1
GH06F030488 1.1 ENCODE 9.7 -164.7 -164746 4.2 HDGF PKNOX1 ARNT CREB3L1 WRNIP1 ARID4B SIN3A DMAP1 ZNF2 YY1 PPP1R10 TRIM26 PAIP1P1 DHX16 ETF1P1 ABCF1 RPL3P2 GNL1 TCF19 HLA-K
- Elite enhancer/Elite enhancer-gene association Download Table
Download GeneHancer data dump

Enhancers around HCG17 on UCSC Golden Path with GeneCards custom track

Promoters for HCG17 Gene
Ensembl Regulatory Elements (ENSRs) TSS Distance (bp) Size (bp) Binding Sites for Transcription Factors within promoters
ENSR00000487631 -366 3001 HDGF PKNOX1 ARNT CREB3L1 ARID4B SIN3A FEZF1 DMAP1 ZNF2 SLC30A9

Genomic Location for HCG17 Gene

Chromosome:
6
Start:
30,234,039 bp from pter
End:
30,326,134 bp from pter
Size:
92,096 bases
Orientation:
Minus strand

Genomic View for HCG17 Gene

Genes around HCG17 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
HCG17 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for HCG17 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

Proteins for HCG17 Gene

Post-translational modifications for HCG17 Gene

No Post-translational modifications

No data available for DME Specific Peptides for HCG17 Gene

Domains & Families for HCG17 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for HCG17 Gene

Function for HCG17 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for HCG17 Gene

Localization for HCG17 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for HCG17 Gene

Pathways & Interactions for HCG17 Gene

SuperPathways for HCG17 Gene

No Data Available

Interacting Proteins for HCG17 Gene

Gene Ontology (GO) - Biological Process for HCG17 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for HCG17 Gene

Transcripts for HCG17 Gene

mRNA/cDNA for HCG17 Gene

(2) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for HCG17 Gene

No ASD Table

Relevant External Links for HCG17 Gene

GeneLoc Exon Structure for
HCG17
ECgene alternative splicing isoforms for
HCG17

Expression for HCG17 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for HCG17 Gene

NURSA nuclear receptor signaling pathways regulating expression of HCG17 Gene:

HCG17
genes like me logo Genes that share expression patterns with HCG17: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners and mRNA Expression by UniProt/SwissProt for HCG17 Gene

Orthologs for HCG17 Gene

Evolution for HCG17 Gene

ENSEMBL:
Gene Tree for HCG17 (if available)
TreeFam:
Gene Tree for HCG17 (if available)

No data available for Orthologs for HCG17 Gene

Paralogs for HCG17 Gene

No data available for Paralogs for HCG17 Gene

Variants for HCG17 Gene

Sequence variations from dbSNP and Humsavar for HCG17 Gene

SNP ID Clin Chr 06 pos Sequence Context AA Info Type
rs1015430 -- 30,232,895(-) gagga(A/T)cacct downstream-variant-500B
rs10428749 -- 30,323,433(+) gcaaa(A/G)gctgt intron-variant
rs1045251 -- 30,291,880(-) CTGAG(A/C)CTCCC intron-variant, nc-transcript-variant
rs10456378 -- 30,238,409(+) TACTA(A/G)GCAAC intron-variant
rs10456379 -- 30,249,002(+) aagcc(C/G)atcag intron-variant

Structural Variations from Database of Genomic Variants (DGV) for HCG17 Gene

Variant ID Type Subtype PubMed ID
esv2428476 CNV deletion 19546169
esv2657403 CNV deletion 23128226
esv2731777 CNV deletion 23290073
esv2731781 CNV deletion 23290073
esv2731782 CNV deletion 23290073
esv2731783 CNV deletion 23290073
esv2731785 CNV deletion 23290073
esv2731786 CNV deletion 23290073
esv3303361 CNV mobile element insertion 20981092
esv3308985 CNV mobile element insertion 20981092
esv3411275 CNV duplication 20981092
esv3415851 CNV insertion 20981092
esv3567506 CNV deletion 23714750
esv3608505 CNV loss 21293372
nsv1074389 CNV deletion 25765185
nsv1122126 CNV deletion 24896259
nsv1144137 CNV deletion 24896259
nsv601264 CNV loss 21841781

Relevant External Links for HCG17 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
HCG17

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for HCG17 Gene

Disorders for HCG17 Gene

Relevant External Links for HCG17

Atlas of Genetics and Cytogenetics in Oncology and Haematology:
HCG17

No disorders were found for HCG17 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for HCG17 Gene

Publications for HCG17 Gene

  1. Genome wide association study (GWAS) of Chagas cardiomyopathy in Trypanosoma cruzi seropositive subjects. (PMID: 24324551) Deng X. … Seielstad M. (PLoS ONE 2013) 3 64
  2. Normalization and subtraction: two approaches to facilitate gene discovery. (PMID: 8889548) Bonaldo M.F. … Soares M.B. (Genome Res. 1996) 3 64

Products for HCG17 Gene

Sources for HCG17 Gene

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