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Aliases for HCG16 Gene

Subcategory (RNA class) for HCG16 Gene

non-coding RNA

Quality Score for this RNA gene is

3

Aliases for HCG16 Gene

  • HLA Complex Group 16 (Non-Protein Coding) 2 3 5
  • HLA Complex Group 16 2
  • HCG15 3

External Ids for HCG16 Gene

Previous GeneCards Identifiers for HCG16 Gene

  • GC00U915695
  • GC06U900753
  • GC06P028955
  • GC06P028958
  • GC06P028963
  • GC06P028971

Summaries for HCG16 Gene

GeneCards Summary for HCG16 Gene

HCG16 (HLA Complex Group 16 (Non-Protein Coding)) is an RNA Gene, and is affiliated with the non-coding RNA class.

No data available for Entrez Gene Summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for HCG16 Gene

Genomics for HCG16 Gene

Regulatory Elements for HCG16 Gene

Enhancers for HCG16 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH06F028953 1.4 Ensembl ENCODE 11.8 -31.2 -31212 2.1 PKNOX1 ARNT SIN3A ARID4B ZNF2 YY1 CBX5 FOS KLF13 PAF1 TRIM27 ZKSCAN8 ZKSCAN3 HCG15 HCG16 ZKSCAN4 HCG14 ZNF602P ZFP57 HCG4P7
GH06F028950 1.3 Ensembl ENCODE 11.8 -33.9 -33858 1.0 ARNT MLX ARID4B SIN3A ZNF2 GTF3C2 ZNF143 FOS DEK NFYC TRIM27 ZKSCAN8 ZKSCAN3 HCG16 HCG15 ZKSCAN4 HCG14 LINC01556 TRK-TTT3-3 TRM-CAT3-2
GH06F028947 1.2 Ensembl ENCODE 11.8 -36.6 -36588 1.7 ARID4B ZNF48 YY1 FOS GTF2B PPARG KAT8 SREBF1 MIER3 SMARCA4 TRIM27 ZFP57 HCG15 HCG16 ZKSCAN3 ZKSCAN4 HCG14 HLA-K HLA-A ZNF602P
GH06F028939 1.2 ENCODE 11.7 -44.1 -44135 2.7 HDGF ARNT CREB3L1 SIN3A FEZF1 DMAP1 ZNF2 YY1 SLC30A9 FOS ZKSCAN8 ZKSCAN3 TRIM27 ZKSCAN4 HCG4P7 HLA-H HLA-F-AS1 MICE ZSCAN9 HLA-U
GH06F028894 1.2 ENCODE 10.8 -88.1 -88060 3.9 MLX CREB3L1 ZFP64 FEZF1 DMAP1 YY1 SLC30A9 ZNF143 ZNF416 ZNF263 ZKSCAN3 ZKSCAN8 ZKSCAN4 TRIM27 ZSCAN9 ZSCAN26 ZNF311 ZNF603P HCG4P7 ZFP57
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around HCG16 on UCSC Golden Path with GeneCards custom track

Promoters for HCG16 Gene
Ensembl Regulatory Elements (ENSRs) TSS Distance (bp) Size (bp) Binding Sites for Transcription Factors within promoters
ENSR00000264238 351 1801 PKNOX1 ARNT MLX ARID4B SIN3A DMAP1 ZNF2 YY1 SLC30A9 ZNF766

Genomic Location for HCG16 Gene

Chromosome:
6
Start:
28,984,949 bp from pter
End:
29,008,251 bp from pter
Size:
23,303 bases
Orientation:
Plus strand

Genomic View for HCG16 Gene

Genes around HCG16 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
HCG16 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for HCG16 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

Proteins for HCG16 Gene

Post-translational modifications for HCG16 Gene

No Post-translational modifications

No data available for DME Specific Peptides for HCG16 Gene

Domains & Families for HCG16 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for HCG16 Gene

Function for HCG16 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for HCG16 Gene

Localization for HCG16 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for HCG16 Gene

Pathways & Interactions for HCG16 Gene

SuperPathways for HCG16 Gene

No Data Available

Interacting Proteins for HCG16 Gene

Gene Ontology (GO) - Biological Process for HCG16 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for HCG16 Gene

Transcripts for HCG16 Gene

mRNA/cDNA for HCG16 Gene

(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for HCG16 Gene

No ASD Table

Relevant External Links for HCG16 Gene

GeneLoc Exon Structure for
HCG16
ECgene alternative splicing isoforms for
HCG16

Expression for HCG16 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for HCG16 Gene

NURSA nuclear receptor signaling pathways regulating expression of HCG16 Gene:

HCG16
genes like me logo Genes that share expression patterns with HCG16: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners and mRNA Expression by UniProt/SwissProt for HCG16 Gene

Orthologs for HCG16 Gene

Evolution for HCG16 Gene

ENSEMBL:
Gene Tree for HCG16 (if available)
TreeFam:
Gene Tree for HCG16 (if available)

No data available for Orthologs for HCG16 Gene

Paralogs for HCG16 Gene

No data available for Paralogs for HCG16 Gene

Variants for HCG16 Gene

Sequence variations from dbSNP and Humsavar for HCG16 Gene

SNP ID Clin Chr 06 pos Sequence Context AA Info Type
rs10655891 -- 28,984,053(+) TCTTT(-/TTTTC)TTTTC upstream-variant-2KB
rs111454945 -- 28,988,899(+) GGGGG(C/G)GGGGG downstream-variant-500B
rs111913110 -- 28,988,132(-) GAATT(C/T)TTTTT intron-variant
rs112421807 -- 28,988,764(+) ATCAG(C/T)GCGAA downstream-variant-500B
rs112875585 -- 28,988,894(+) GGGGT(G/T)GGGGG downstream-variant-500B

Relevant External Links for HCG16 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
HCG16

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for HCG16 Gene

Disorders for HCG16 Gene

Relevant External Links for HCG16

Atlas of Genetics and Cytogenetics in Oncology and Haematology:
HCG16

No disorders were found for HCG16 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for HCG16 Gene

Publications for HCG16 Gene

  1. Diversification of transcriptional modulation: large-scale identification and characterization of putative alternative promoters of human genes. (PMID: 16344560) Kimura K. … Sugano S. (Genome Res. 2006) 3 64

Products for HCG16 Gene

Sources for HCG16 Gene

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