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Aliases for HCG15 Gene

Subcategory (RNA class) for HCG15 Gene

non-coding RNA

Quality Score for this RNA gene is

3

Aliases for HCG15 Gene

  • HLA Complex Group 15 (Non-Protein Coding) 2 3 5
  • HLA Complex Group 16 (Non-Protein Coding) 2 3
  • HLA Complex Group 15 2
  • HLA Complex Group 16 2
  • HCG16 3

External Ids for HCG15 Gene

Previous HGNC Symbols for HCG15 Gene

  • HCG16

Previous GeneCards Identifiers for HCG15 Gene

  • GC00U915690
  • GC06U900750
  • GC06P028957
  • GC06P028960
  • GC06P028961
  • GC06P028965
  • GC06P028969

Summaries for HCG15 Gene

GeneCards Summary for HCG15 Gene

HCG15 (HLA Complex Group 15 (Non-Protein Coding)) is an RNA Gene, and is affiliated with the non-coding RNA class. Diseases associated with HCG15 include Small Cell Cancer Of The Lung, Somatic.

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for HCG15 Gene

Genomics for HCG15 Gene

Regulatory Elements for HCG15 Gene

Enhancers for HCG15 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH06G028939 1.7 Ensembl ENCODE dbSUPER 11.7 -45.2 -45170 3.1 CREB3L1 FEZF1 DMAP1 YY1 SLC30A9 ZNF263 SP3 TBX21 SSRP1 ZNF610 ZKSCAN8 ZKSCAN3 TRIM27 ZKSCAN4 ZSCAN9 HCG4P7 HLA-H HLA-F-AS1 ZSCAN26 MICE
GH06G028952 1.6 Ensembl ENCODE dbSUPER 11.8 -32.6 -32566 1.9 FOXA2 PKNOX1 ARNT SIN3A ARID4B ZNF2 YY1 ZNF766 CBX5 FOS TRIM27 ZKSCAN3 RPL23AP1 IFITM4P ENSG00000244349 HCG15 ZKSCAN4 ZKSCAN8 HCG14 HLA-F-AS1
GH06G028894 1.5 ENCODE dbSUPER 10.8 -89.3 -89314 3.9 CREB3L1 MLX AGO1 ZFP64 DMAP1 FEZF1 YY1 SLC30A9 ZNF143 ZNF416 ZKSCAN3 TRIM27 ZKSCAN4 ZKSCAN8 ZSCAN9 SUMO2P1 ZSCAN26 ZNF603P ZFP57 ENSG00000244349
GH06G028950 1.3 Ensembl ENCODE 11.8 -35.0 -35019 0.8 MLX ARNT ARID4B SIN3A ZNF2 ZNF143 FOS DEK MXD4 NFYC TRIM27 ZKSCAN3 ENSG00000244349 HCG15 ZKSCAN4 ZKSCAN8 HCG14 LINC01556 TRK-TTT3-3 TRM-CAT3-2
GH06G028947 1.2 ENCODE dbSUPER 11.8 -37.8 -37842 1.7 FOXA2 ARID4B ZNF48 YY1 FOS GTF2B PPARG KAT8 SREBF1 MIER3 TRIM27 ZFP57 ENSG00000244349 HCG15 ZKSCAN3 ZKSCAN4 HCG14 HLA-K HLA-A ZNF602P
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around HCG15 on UCSC Golden Path with GeneCards custom track

Promoters for HCG15 Gene
Ensembl Regulatory Elements (ENSRs) TSS Distance (bp) Size (bp) Binding Sites for Transcription Factors within promoters
ENSR00000195300 -902 1800 FOXA2 PKNOX1 MLX ARNT ARID4B SIN3A DMAP1 ZNF2 ZBTB7B YY1

Genomic Location for HCG15 Gene

Chromosome:
6
Start:
28,986,203 bp from pter
End:
28,987,484 bp from pter
Size:
1,282 bases
Orientation:
Plus strand

Genomic View for HCG15 Gene

Genes around HCG15 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
HCG15 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for HCG15 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

Proteins for HCG15 Gene

Post-translational modifications for HCG15 Gene

No Post-translational modifications

No data available for DME Specific Peptides for HCG15 Gene

Domains & Families for HCG15 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for HCG15 Gene

Function for HCG15 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for HCG15 Gene

Localization for HCG15 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for HCG15 Gene

Pathways & Interactions for HCG15 Gene

SuperPathways for HCG15 Gene

No Data Available

Interacting Proteins for HCG15 Gene

Gene Ontology (GO) - Biological Process for HCG15 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for HCG15 Gene

Transcripts for HCG15 Gene

mRNA/cDNA for HCG15 Gene

(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for HCG15 Gene

No ASD Table

Relevant External Links for HCG15 Gene

GeneLoc Exon Structure for
HCG15
ECgene alternative splicing isoforms for
HCG15

Expression for HCG15 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for HCG15 Gene

NURSA nuclear receptor signaling pathways regulating expression of HCG15 Gene:

HCG15
genes like me logo Genes that share expression patterns with HCG15: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for HCG15 Gene

Orthologs for HCG15 Gene

Evolution for HCG15 Gene

ENSEMBL:
Gene Tree for HCG15 (if available)
TreeFam:
Gene Tree for HCG15 (if available)

No data available for Orthologs for HCG15 Gene

Paralogs for HCG15 Gene

No data available for Paralogs for HCG15 Gene

Variants for HCG15 Gene

Sequence variations from dbSNP and Humsavar for HCG15 Gene

SNP ID Clin Chr 06 pos Sequence Context AA Info Type
rs149603692 -- 28,989,047(+) CCAGT(A/C/T)TCTTC downstream-variant-500B
rs370476304 -- 28,988,839(+) CTGGA(A/C/G)GGAGC downstream-variant-500B
rs534944816 -- 28,985,566(+) ATCGG(A/G/T)ACTGA intron-variant, upstream-variant-2KB
rs536543790 -- 28,984,513(+) GAATA(A/G/T)AAGTA upstream-variant-2KB
rs544856451 -- 28,988,954(+) GAGGG(A/C/T)GACAT downstream-variant-500B

Relevant External Links for HCG15 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
HCG15

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for HCG15 Gene

Disorders for HCG15 Gene

MalaCards: The human disease database

(1) MalaCards diseases for HCG15 Gene - From: DISEASES and GeneCards

Disorder Aliases PubMed IDs
small cell cancer of the lung, somatic
  • small cell cancer of the lung
- elite association - COSMIC cancer census association via MalaCards
Search HCG15 in MalaCards View complete list of genes associated with diseases

Relevant External Links for HCG15

Atlas of Genetics and Cytogenetics in Oncology and Haematology:
HCG15
genes like me logo Genes that share disorders with HCG15: view

No data available for UniProtKB/Swiss-Prot and Genatlas for HCG15 Gene

Publications for HCG15 Gene

  1. Diversification of transcriptional modulation: large-scale identification and characterization of putative alternative promoters of human genes. (PMID: 16344560) Kimura K. … Sugano S. (Genome Res. 2006) 3 64

Products for HCG15 Gene

Sources for HCG15 Gene

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