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Aliases for HCG15 Gene

Subcategory (RNA class) for HCG15 Gene

non-coding RNA

Quality Score for this RNA gene is

3

Aliases for HCG15 Gene

  • HLA Complex Group 15 (Non-Protein Coding) 2 3 5
  • HLA Complex Group 16 (Non-Protein Coding) 2 3
  • HLA Complex Group 15 2
  • HLA Complex Group 16 2
  • HCG16 3

External Ids for HCG15 Gene

Previous HGNC Symbols for HCG15 Gene

  • HCG16

Previous GeneCards Identifiers for HCG15 Gene

  • GC00U915690
  • GC06U900750
  • GC06P028957
  • GC06P028960
  • GC06P028961
  • GC06P028965
  • GC06P028969

Summaries for HCG15 Gene

GeneCards Summary for HCG15 Gene

HCG15 (HLA Complex Group 15 (Non-Protein Coding)) is an RNA Gene, and is affiliated with the non-coding RNA class. Diseases associated with HCG15 include Small Cell Cancer Of The Lung.

Additional gene information for HCG15 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for HCG15 Gene

Genomics for HCG15 Gene

GeneHancer (GH) Regulatory Elements for HCG15 Gene

Promoters and enhancers for HCG15 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH06I028983 Promoter/Enhancer 1.9 Ensembl ENCODE dbSUPER 550.8 -1.1 -1131 2.5 FOXA2 MLX ARNT ARID4B SIN3A DMAP1 ZBTB7B ZNF48 YY1 SLC30A9 ENSG00000244349 HCG15 TRIM27 ZKSCAN4 ZKSCAN3 ZSCAN9 ZKSCAN8 ZSCAN12 HCG4P7 TRE-CTC1-6
GH06I028894 Promoter/Enhancer 1.8 Ensembl ENCODE dbSUPER 10.8 -89.3 -89314 3.9 CLOCK MLX ZFP64 IRF4 YY1 ZNF213 E2F8 ZNF143 SP3 NFYC HCG14 TRIM27 ZKSCAN8 ZSCAN12 ZKSCAN3 ZSCAN9 ZKSCAN4 HCG4P7 ZSCAN23 HLA-H
GH06I028939 Enhancer 1.5 Ensembl ENCODE dbSUPER 11.7 -45.2 -45169 3.1 FEZF1 DMAP1 IRF4 YY1 SLC30A9 ZNF213 E2F8 SP3 SSRP1 ZNF610 GC06P028942 TRL-CAA1-2 TRQ-CTG1-3 ZSCAN23 ZSCAN12 ZKSCAN8 ZSCAN26 PGBD1 TRIM27 ZKSCAN3
GH06I028952 Enhancer 1.4 Ensembl ENCODE dbSUPER 11.8 -32.6 -32565 1.9 PKNOX1 FOXA2 ARNT ARID4B SIN3A ZNF2 YY1 ZNF766 ZNF213 FOS TRM-CAT3-2 TRIM27 ZSCAN12 ZKSCAN8 ZSCAN23 HCG15 ENSG00000244349 HCG14 SUMO2P1 ZNF602P
GH06I028950 Enhancer 1.2 Ensembl ENCODE 11.8 -35.0 -35019 0.8 MLX ARNT ARID4B SIN3A ZNF2 ZNF213 E2F8 FOS KLF13 DEK TRK-TTT3-3 TRIM27 ZSCAN12 ZKSCAN8 ZSCAN23 HCG15 ENSG00000244349 HCG14 SUMO2P1 LINC01556
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data dump

GeneHancers around HCG15 on UCSC Golden Path with GeneCards custom track

Genomic Locations for HCG15 Gene

Genomic Locations for HCG15 Gene
chr6:28,986,203-28,987,484
(GRCh38/hg38)
Size:
1,282 bases
Orientation:
Plus strand
chr6:28,953,980-28,955,261
(GRCh37/hg19)

Genomic View for HCG15 Gene

Genes around HCG15 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
HCG15 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for HCG15 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

Proteins for HCG15 Gene

Post-translational modifications for HCG15 Gene

No Post-translational modifications

No data available for DME Specific Peptides for HCG15 Gene

Domains & Families for HCG15 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for HCG15 Gene

Function for HCG15 Gene

Phenotypes From GWAS Catalog for HCG15 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for HCG15 Gene

Localization for HCG15 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for HCG15 Gene

Pathways & Interactions for HCG15 Gene

SuperPathways for HCG15 Gene

No Data Available

Interacting Proteins for HCG15 Gene

Gene Ontology (GO) - Biological Process for HCG15 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for HCG15 Gene

Drugs & Compounds for HCG15 Gene

No Compound Related Data Available

Transcripts for HCG15 Gene

mRNA/cDNA for HCG15 Gene

(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for HCG15 Gene

No ASD Table

Relevant External Links for HCG15 Gene

GeneLoc Exon Structure for
HCG15
ECgene alternative splicing isoforms for
HCG15

Expression for HCG15 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for HCG15 Gene

NURSA nuclear receptor signaling pathways regulating expression of HCG15 Gene:

HCG15
genes like me logo Genes that share expression patterns with HCG15: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for HCG15 Gene

Orthologs for HCG15 Gene

Evolution for HCG15 Gene

ENSEMBL:
Gene Tree for HCG15 (if available)
TreeFam:
Gene Tree for HCG15 (if available)

No data available for Orthologs for HCG15 Gene

Paralogs for HCG15 Gene

No data available for Paralogs for HCG15 Gene

Variants for HCG15 Gene

Additional Variant Information for HCG15 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
HCG15

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations from dbSNP and Humsavar , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for HCG15 Gene

Disorders for HCG15 Gene

MalaCards: The human disease database

(1) MalaCards diseases for HCG15 Gene - From: DISEASES

Disorder Aliases PubMed IDs
small cell cancer of the lung
  • sclc1
- elite association - COSMIC cancer census association via MalaCards
Search HCG15 in MalaCards View complete list of genes associated with diseases
genes like me logo Genes that share disorders with HCG15: view

No data available for UniProtKB/Swiss-Prot and Genatlas for HCG15 Gene

Publications for HCG15 Gene

  1. Diversification of transcriptional modulation: large-scale identification and characterization of putative alternative promoters of human genes. (PMID: 16344560) Kimura K … Sugano S (Genome research 2006) 3 58

Products for HCG15 Gene

Sources for HCG15 Gene

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