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Aliases for HCG14 Gene

Subcategory (RNA class) for HCG14 Gene

non-coding RNA

Quality Score for this RNA gene is

3

Aliases for HCG14 Gene

  • HLA Complex Group 14 (Non-Protein Coding) 2 3 5
  • HLA Complex Group 14 2
  • DJ111M5.4 3

External Ids for HCG14 Gene

Previous GeneCards Identifiers for HCG14 Gene

  • GC00U915689
  • GC06U900749
  • GC06P028865

Summaries for HCG14 Gene

GeneCards Summary for HCG14 Gene

HCG14 (HLA Complex Group 14 (Non-Protein Coding)) is an RNA Gene, and is affiliated with the non-coding RNA class.

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for HCG14 Gene

Genomics for HCG14 Gene

Regulatory Elements for HCG14 Gene

Enhancers for HCG14 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH06G028939 1.7 Ensembl ENCODE dbSUPER 11.4 +44.5 44504 3.1 CREB3L1 FEZF1 DMAP1 YY1 SLC30A9 ZNF263 SP3 TBX21 SSRP1 ZNF610 ZKSCAN8 ZKSCAN3 TRIM27 ZKSCAN4 ZSCAN9 HCG4P7 HLA-H HLA-F-AS1 ZSCAN26 MICE
GH06G028952 1.6 Ensembl ENCODE dbSUPER 10.9 +57.1 57108 1.9 FOXA2 PKNOX1 ARNT SIN3A ARID4B ZNF2 YY1 ZNF766 CBX5 FOS TRIM27 ZKSCAN3 RPL23AP1 IFITM4P HCG15 ENSG00000244349 ZKSCAN4 ZKSCAN8 HCG14 HLA-F-AS1
GH06G028927 1.2 ENCODE 12.5 +31.5 31503 0.9 CREB3L1 MLX YY1 ZNF143 ZNF263 SP3 NFYC TBX21 MEF2D SSRP1 ZKSCAN8 ZKSCAN3 HCG4P7 ZNF311 HCG14 ZSCAN23 ZSCAN9 ZSCAN26 LINC01556 ZNF602P
GH06G028950 1.3 Ensembl ENCODE 10.9 +54.7 54655 0.8 MLX ARNT ARID4B SIN3A ZNF2 ZNF143 FOS DEK MXD4 NFYC TRIM27 ZKSCAN3 HCG15 ENSG00000244349 ZKSCAN4 ZKSCAN8 HCG14 LINC01556 TRK-TTT3-3 TRM-CAT3-2
GH06G028838 1.2 ENCODE 11.2 -58.1 -58051 2.2 CREB3L1 DMAP1 YY1 ZNF143 ZNF263 SP3 NFYC GLIS1 RCOR2 NBN TRIM27 ZKSCAN3 ZKSCAN4 LINC01556 RPL23AP1 IFITM4P ZFP57 HCG14 ZKSCAN8 HLA-F-AS1
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around HCG14 on UCSC Golden Path with GeneCards custom track

Promoters for HCG14 Gene
Ensembl Regulatory Elements (ENSRs) TSS Distance (bp) Size (bp) Binding Sites for Transcription Factors within promoters
ENSR00000195285 271 3600 CREB3L1 MLX AGO1 ZFP64 DMAP1 FEZF1 YY1 SLC30A9 ZNF143 ZNF416

Genomic Location for HCG14 Gene

Chromosome:
6
Start:
28,896,530 bp from pter
End:
28,897,322 bp from pter
Size:
793 bases
Orientation:
Plus strand

Genomic View for HCG14 Gene

Genes around HCG14 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
HCG14 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for HCG14 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

Proteins for HCG14 Gene

Post-translational modifications for HCG14 Gene

No Post-translational modifications

No data available for DME Specific Peptides for HCG14 Gene

Domains & Families for HCG14 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for HCG14 Gene

Function for HCG14 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for HCG14 Gene

Localization for HCG14 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for HCG14 Gene

Pathways & Interactions for HCG14 Gene

SuperPathways for HCG14 Gene

No Data Available

Interacting Proteins for HCG14 Gene

Gene Ontology (GO) - Biological Process for HCG14 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for HCG14 Gene

Drugs & Compounds for HCG14 Gene

No Compound Related Data Available

Transcripts for HCG14 Gene

mRNA/cDNA for HCG14 Gene

(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for HCG14 Gene

No ASD Table

Relevant External Links for HCG14 Gene

GeneLoc Exon Structure for
HCG14
ECgene alternative splicing isoforms for
HCG14

Expression for HCG14 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for HCG14 Gene

mRNA differential expression in normal tissues according to GTEx for HCG14 Gene

This gene is overexpressed in Testis (x5.9).

NURSA nuclear receptor signaling pathways regulating expression of HCG14 Gene:

HCG14
genes like me logo Genes that share expression patterns with HCG14: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for HCG14 Gene

Orthologs for HCG14 Gene

Evolution for HCG14 Gene

ENSEMBL:
Gene Tree for HCG14 (if available)
TreeFam:
Gene Tree for HCG14 (if available)

No data available for Orthologs for HCG14 Gene

Paralogs for HCG14 Gene

No data available for Paralogs for HCG14 Gene

Variants for HCG14 Gene

Sequence variations from dbSNP and Humsavar for HCG14 Gene

SNP ID Clin Chr 06 pos Sequence Context AA Info Type
rs1000199052 -- 28,896,298(+) TGAGT(C/T)TGGCG upstream-variant-2KB
rs1000227521 -- 28,896,246(+) AACCC(A/G)CGCCT upstream-variant-2KB
rs1000385742 -- 28,894,538(+) TCCTG(C/G)CTCAG upstream-variant-2KB
rs1000530737 -- 28,897,311(+) AATAC(A/G)TTTTA nc-transcript-variant
rs1000561840 -- 28,896,979(+) TCGCC(A/C/G)GCGGC intron-variant

Structural Variations from Database of Genomic Variants (DGV) for HCG14 Gene

Variant ID Type Subtype PubMed ID
esv3608464 CNV gain 21293372
nsv1074388 CNV deletion 25765185
nsv1122126 CNV deletion 24896259
nsv1145096 CNV deletion 24896259
nsv462667 CNV gain 19166990
nsv510021 OTHER sequence alteration 20534489
nsv601212 CNV gain 21841781
nsv830622 CNV gain 17160897

Relevant External Links for HCG14 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
HCG14

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for HCG14 Gene

Disorders for HCG14 Gene

Relevant External Links for HCG14

Atlas of Genetics and Cytogenetics in Oncology and Haematology:
HCG14

No disorders were found for HCG14 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for HCG14 Gene

Publications for HCG14 Gene

No publications were found for HCG14 Gene.

Products for HCG14 Gene

Sources for HCG14 Gene

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