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Aliases for HCG14 Gene

Subcategory (RNA class) for HCG14 Gene

non-coding RNA

Quality Score for this RNA gene is

3

Aliases for HCG14 Gene

  • HLA Complex Group 14 (Non-Protein Coding) 2 3 5
  • HLA Complex Group 14 2
  • DJ111M5.4 3

External Ids for HCG14 Gene

Previous GeneCards Identifiers for HCG14 Gene

  • GC00U915689
  • GC06U900749
  • GC06P028865

Summaries for HCG14 Gene

GeneCards Summary for HCG14 Gene

HCG14 (HLA Complex Group 14 (Non-Protein Coding)) is an RNA Gene, and is affiliated with the non-coding RNA class.

No data available for Entrez Gene Summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for HCG14 Gene

Genomics for HCG14 Gene

Regulatory Elements for HCG14 Gene

Enhancers for HCG14 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH06F028934 0.9 Ensembl 12.4 +38.2 38193 0.6 ZBTB2 ZEB2 ELF1 ZNF121 FOXK2 MLLT1 ZSCAN29 ZBTB33 ZNF652 HCG14 GC06P028935 GC06M028926
GH06F028927 0.2 ENCODE 12.4 +31.5 31503 0.9 PKNOX1 MLX ARNT CREB3L1 ARID4B SIN3A ZNF2 YY1 ZNF143 ZNF207 ZKSCAN8 ZKSCAN3 ZSCAN9 HCG4P7 ZNF311 ZKSCAN4 HCG14 ZSCAN23 ZSCAN26 MICE
GH06F028854 0.3 FANTOM5 11.5 -41.6 -41647 0.2 HDAC2 ZMYM3 ZBTB33 KDM1A HCG14 TRIM27 HCG15 HCG16 ZNF602P OR2J3 OR2B3 OR14J1 RPL13P ENSG00000225173
GH06F028939 0.5 ENCODE 11.4 +44.3 44285 2.7 HDGF ARNT CREB3L1 SIN3A FEZF1 DMAP1 ZNF2 YY1 SLC30A9 FOS ZKSCAN8 ZKSCAN3 TRIM27 ZKSCAN4 HCG4P7 HLA-H HLA-F-AS1 MICE ZSCAN9 HLA-U
GH06F028848 0.6 Ensembl 11.3 -47.7 -47666 0.5 HDAC1 HDGF BRD4 CTCF ATF1 PKNOX1 SUZ12 RAD21 FOSL1 ADNP HCG14 TRIM27 ZNF603P ENSG00000225173 RPL13P
- Elite enhancer/Elite enhancer-gene association Download Table
Download GeneHancer data dump

Enhancers around HCG14 on UCSC Golden Path with GeneCards custom track

Promoters for HCG14 Gene
Ensembl Regulatory Elements (ENSRs) TSS Distance (bp) Size (bp) Binding Sites for Transcription Factors within promoters
ENSR00000264215 371 3799 MLX CREB3L1 ZFP64 FEZF1 DMAP1 YY1 SLC30A9 ZNF143 ZNF416 ZNF263

Genomic Location for HCG14 Gene

Chromosome:
6
Start:
28,896,530 bp from pter
End:
28,897,322 bp from pter
Size:
793 bases
Orientation:
Plus strand

Genomic View for HCG14 Gene

Genes around HCG14 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
HCG14 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for HCG14 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

Proteins for HCG14 Gene

Post-translational modifications for HCG14 Gene

No Post-translational modifications

No data available for DME Specific Peptides for HCG14 Gene

Domains & Families for HCG14 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for HCG14 Gene

Function for HCG14 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for HCG14 Gene

Localization for HCG14 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for HCG14 Gene

Pathways & Interactions for HCG14 Gene

SuperPathways for HCG14 Gene

No Data Available

Interacting Proteins for HCG14 Gene

Gene Ontology (GO) - Biological Process for HCG14 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for HCG14 Gene

Transcripts for HCG14 Gene

mRNA/cDNA for HCG14 Gene

(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for HCG14 Gene

No ASD Table

Relevant External Links for HCG14 Gene

GeneLoc Exon Structure for
HCG14
ECgene alternative splicing isoforms for
HCG14

Expression for HCG14 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for HCG14 Gene

mRNA differential expression in normal tissues according to GTEx for HCG14 Gene

This gene is overexpressed in Testis (x5.9).

NURSA nuclear receptor signaling pathways regulating expression of HCG14 Gene:

HCG14
genes like me logo Genes that share expression patterns with HCG14: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners and mRNA Expression by UniProt/SwissProt for HCG14 Gene

Orthologs for HCG14 Gene

Evolution for HCG14 Gene

ENSEMBL:
Gene Tree for HCG14 (if available)
TreeFam:
Gene Tree for HCG14 (if available)

No data available for Orthologs for HCG14 Gene

Paralogs for HCG14 Gene

No data available for Paralogs for HCG14 Gene

Variants for HCG14 Gene

Sequence variations from dbSNP and Humsavar for HCG14 Gene

SNP ID Clin Chr 06 pos Sequence Context AA Info Type
rs112131095 -- 28,895,963(+) GGACT(A/G)CAGGC upstream-variant-2KB
rs11373890 -- 28,895,181(+) AAAAA(-/A)AAAAA upstream-variant-2KB
rs114377261 -- 28,896,347(+) GCCCT(A/G)ATTTT upstream-variant-2KB
rs114458453 -- 28,897,159(+) TCACA(A/G)ATTTT nc-transcript-variant
rs114475610 -- 28,895,260(+) TTCAC(A/G)GTGAT upstream-variant-2KB

Structural Variations from Database of Genomic Variants (DGV) for HCG14 Gene

Variant ID Type Subtype PubMed ID
esv3608464 CNV gain 21293372
nsv1074388 CNV deletion 25765185
nsv1122126 CNV deletion 24896259
nsv1145096 CNV deletion 24896259
nsv462667 CNV gain 19166990
nsv510021 OTHER sequence alteration 20534489
nsv601212 CNV gain 21841781
nsv830622 CNV gain 17160897

Relevant External Links for HCG14 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
HCG14

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for HCG14 Gene

Disorders for HCG14 Gene

Relevant External Links for HCG14

Atlas of Genetics and Cytogenetics in Oncology and Haematology:
HCG14

No disorders were found for HCG14 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for HCG14 Gene

Publications for HCG14 Gene

No publications were found for HCG14 Gene.

Products for HCG14 Gene

Sources for HCG14 Gene

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