Free for academic non-profit institutions. Other users need a Commercial license

Aliases for HCG11 Gene

Subcategory (RNA class) for HCG11 Gene

non-coding RNA

Quality Score for this RNA gene is

3

Aliases for HCG11 Gene

  • HLA Complex Group 11 (Non-Protein Coding) 2 3 5
  • HLA Complex Group 11 2
  • CTA-14H9.3 3
  • BK14H9.3 3

External Ids for HCG11 Gene

Previous GeneCards Identifiers for HCG11 Gene

  • GC06U900732
  • GC06P026522
  • GC06P026523
  • GC06P026464
  • GC06P026525
  • GC06P026528
  • GC06P026534
  • GC06P026549
  • GC06P026592
  • GC06P026620
  • GC06P026632
  • GC06P026661
  • GC06P026658
  • GC06P026703
  • GC06P026749

Summaries for HCG11 Gene

GeneCards Summary for HCG11 Gene

HCG11 (HLA Complex Group 11 (Non-Protein Coding)) is an RNA Gene, and is affiliated with the non-coding RNA class.

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for HCG11 Gene

Genomics for HCG11 Gene

Regulatory Elements for HCG11 Gene

Enhancers for HCG11 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH06G026222 1.3 ENCODE dbSUPER 23.9 -296.8 -296841 5.1 PKNOX1 ARNT WRNIP1 SIN3A FEZF1 YY1 CBX5 ZNF143 PAF1 NFYC ZNF322 HMGN4 HCG11 HIST1H3E ABT1 HIST1H2AE ENSG00000261353 GUSBP2 ENSG00000272462 HIST1H2APS3
GH06G026471 1.6 Ensembl ENCODE dbSUPER 16.9 -45.9 -45926 7.6 HDGF FOXA2 PKNOX1 MLX ARNT WRNIP1 SIN3A ARID4B DMAP1 FEZF1 BTN3A2 BTN2A2 HMGN4 HCG11 BTN2A3P BTN2A1 RNU6-502P BTN1A1 LOC102724851 HIST1H2AH
GH06G027374 1 ENCODE 19.9 +853.5 853523 2.0 PKNOX1 ATF1 CREB3L1 ARID4B SIN3A ETS1 ZNF766 ZNF143 SP3 YY2 ZNF391 ZNF322 ZKSCAN8 ZKSCAN3 ZSCAN9 HCG11 HMGN4 PGBD1 ZSCAN26 ABT1
GH06G026567 1.7 Ensembl ENCODE dbSUPER 11.5 +48.8 48821 5.3 CREB3L1 MLX ZFP64 DMAP1 FEZF1 YY1 SLC30A9 ZNF143 ZNF263 SP3 BTN3A2 HMGN4 ABT1 LOC102724851 BTN2A1 HCG11 RNU6-502P HIST1H1D BTN1A1 HIST1H4H
GH06G027295 1.4 Ensembl ENCODE 13.5 +775.2 775173 3.8 HDGF PKNOX1 FOXA2 CREB3L1 ARNT SIN3A ZNF2 YY1 FOS KLF13 ABT1 HMGN4 ZKSCAN4 ZNF204P ZNF391 ZSCAN26 HCG11 ZNF322 ZKSCAN8 BTN3A2
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around HCG11 on UCSC Golden Path with GeneCards custom track

Promoters for HCG11 Gene
Ensembl Regulatory Elements (ENSRs) TSS Distance (bp) Size (bp) Binding Sites for Transcription Factors within promoters
ENSR00000195047 294 2801 CREB3L1 MLX DMAP1 YY1 SLC30A9 ZNF143 ZNF263 SP3 TBX21 MEF2D

Genomic Location for HCG11 Gene

Chromosome:
6
Start:
26,521,706 bp from pter
End:
26,527,393 bp from pter
Size:
5,688 bases
Orientation:
Plus strand

Genomic View for HCG11 Gene

Genes around HCG11 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
HCG11 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for HCG11 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for HCG11 Gene

Proteins for HCG11 Gene

Post-translational modifications for HCG11 Gene

No Post-translational modifications

No data available for DME Specific Peptides for HCG11 Gene

Domains & Families for HCG11 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for HCG11 Gene

Function for HCG11 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for HCG11 Gene

Localization for HCG11 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for HCG11 Gene

Pathways & Interactions for HCG11 Gene

SuperPathways for HCG11 Gene

No Data Available

Interacting Proteins for HCG11 Gene

Gene Ontology (GO) - Biological Process for HCG11 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for HCG11 Gene

Drugs & Compounds for HCG11 Gene

No Compound Related Data Available

Transcripts for HCG11 Gene

mRNA/cDNA for HCG11 Gene

(5) Additional mRNA sequences :
(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Unigene Clusters for HCG11 Gene

HLA complex group 11 (non-protein coding):
Representative Sequences:

Alternative Splicing Database (ASD) splice patterns (SP) for HCG11 Gene

No ASD Table

Relevant External Links for HCG11 Gene

GeneLoc Exon Structure for
HCG11
ECgene alternative splicing isoforms for
HCG11

Expression for HCG11 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for HCG11 Gene

NURSA nuclear receptor signaling pathways regulating expression of HCG11 Gene:

HCG11

SOURCE GeneReport for Unigene cluster for HCG11 Gene:

Hs.272939
genes like me logo Genes that share expression patterns with HCG11: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for HCG11 Gene

Orthologs for HCG11 Gene

Evolution for HCG11 Gene

ENSEMBL:
Gene Tree for HCG11 (if available)
TreeFam:
Gene Tree for HCG11 (if available)

No data available for Orthologs for HCG11 Gene

Paralogs for HCG11 Gene

No data available for Paralogs for HCG11 Gene

Variants for HCG11 Gene

Sequence variations from dbSNP and Humsavar for HCG11 Gene

SNP ID Clin Chr 06 pos Sequence Context AA Info Type
rs1000110902 -- 26,527,026(+) TGTTG(C/T)CATTT nc-transcript-variant
rs1000462795 -- 26,523,595(+) TGAAG(C/G)CACCT nc-transcript-variant, upstream-variant-2KB
rs1000514539 -- 26,523,263(+) TGTAC(A/G)TTTTG nc-transcript-variant, upstream-variant-2KB
rs1001188167 -- 26,526,362(+) AGATC(A/C)CAAGG nc-transcript-variant
rs1001219425 -- 26,525,993(+) TGAAT(A/G)TCCTA nc-transcript-variant

Structural Variations from Database of Genomic Variants (DGV) for HCG11 Gene

Variant ID Type Subtype PubMed ID
nsv1023453 CNV gain 25217958
nsv965690 CNV duplication 23825009

Relevant External Links for HCG11 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
HCG11

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for HCG11 Gene

Disorders for HCG11 Gene

Relevant External Links for HCG11

Atlas of Genetics and Cytogenetics in Oncology and Haematology:
HCG11

No disorders were found for HCG11 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for HCG11 Gene

Publications for HCG11 Gene

  1. Downregulation of long non-coding RNA HCG11 predicts a poor prognosis in prostate cancer. (PMID: 27522256) Zhang Y. … Li Y. (Biomed. Pharmacother. 2016) 2 3 64
  2. Complete sequencing and characterization of 21,243 full-length human cDNAs. (PMID: 14702039) Ota T. … Sugano S. (Nat. Genet. 2004) 3 64

Products for HCG11 Gene

Sources for HCG11 Gene

Content
Loading form....