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Aliases for HCG11 Gene

Subcategory (RNA class) for HCG11 Gene

lncRNA

Quality Score for this RNA gene is

3

Aliases for HCG11 Gene

  • HLA Complex Group 11 (Non-Protein Coding) 2 3
  • HLA Complex Group 11 2
  • BK14H9.3 3

External Ids for HCG11 Gene

Previous GeneCards Identifiers for HCG11 Gene

  • GC06U900732
  • GC06P026522
  • GC06P026523
  • GC06P026464
  • GC06P026525
  • GC06P026528
  • GC06P026534
  • GC06P026549
  • GC06P026592
  • GC06P026620

Summaries for HCG11 Gene

GeneCards Summary for HCG11 Gene

HCG11 (HLA Complex Group 11 (Non-Protein Coding)) is an RNA Gene, and is affiliated with the lncRNA class.

No data available for Entrez Gene Summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for HCG11 Gene

Genomics for HCG11 Gene

Regulatory Elements for HCG11 Gene

Epigenetics Products

  • DNA Methylation CpG Assay Predesigned for Pyrosequencing in human,mouse,rat

Genomic Location for HCG11 Gene

Start:
26,521,706 bp from pter
End:
26,527,393 bp from pter
Size:
5,688 bases
Orientation:
Plus strand

Genomic View for HCG11 Gene

UCSC Golden Path with GeneCards custom track
Cytogenetic band:
Genomic Location for HCG11 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for HCG11 Gene

Proteins for HCG11 Gene

Post-translational modifications for HCG11 Gene

No Post-translational modifications

No data available for DME Specific Peptides for HCG11 Gene

Domains for HCG11 Gene

Gene Families for HCG11 Gene

HGNC:
  • LNCRNA :Long non-coding RNAs

Graphical View of Domain Structure for InterPro Entry

genes like me logo Genes that share domains with HCG11: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for HCG11 Gene

Function for HCG11 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Animal Models , miRNA , Transcription Factor Targeting and HOMER Transcription for HCG11 Gene

Localization for HCG11 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for HCG11 Gene

Pathways for HCG11 Gene

SuperPathways for HCG11 Gene

No Data Available

Interacting Proteins for HCG11 Gene

Gene Ontology (GO) - Biological Process for HCG11 Gene

None

No data available for Pathways by source for HCG11 Gene

Transcripts for HCG11 Gene

mRNA/cDNA for HCG11 Gene

(5) Additional mRNA sequences :
(2) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Unigene Clusters for HCG11 Gene

HLA complex group 11 (non-protein coding):
Representative Sequences:

miRNA Products

Inhibitory RNA Products

  • Predesigned siRNA for gene silencing in human,mouse,rat for HCG11

Primer Products

  • QuantiTect SYBR Green Assays in human,mouse,rat
  • Pre-validated RT² qPCR Primer Assay in human,mouse,rat
  • QuantiFast Probe-based Assays in human,mouse,rat

Flow Cytometry Products

Alternative Splicing Database (ASD) splice patterns (SP) for HCG11 Gene

No ASD Table

Relevant External Links for HCG11 Gene

GeneLoc Exon Structure for
HCG11
ECgene alternative splicing isoforms for
HCG11

Expression for HCG11 Gene

mRNA expression in normal human tissues for HCG11 Gene

SOURCE GeneReport for Unigene cluster for HCG11 Gene Hs.272939

genes like me logo Genes that share expressions with HCG11: view

In Situ Assay Products

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein expression and mRNA Expression by UniProt/SwissProt for HCG11 Gene

Orthologs for HCG11 Gene

Evolution for HCG11 Gene

ENSEMBL:
Gene Tree for HCG11 (if available)
TreeFam:
Gene Tree for HCG11 (if available)

No data available for Orthologs for HCG11 Gene

Paralogs for HCG11 Gene

No data available for Paralogs for HCG11 Gene

Variants for HCG11 Gene

Sequence variations from dbSNP and Humsavar for HCG11 Gene

SNP ID Clin Chr 06 pos Sequence Context AA Info Type MAF
rs1056347 -- 26,527,296(+) TTGTT(C/G)TTTGC nc-transcript-variant
rs1535274 -- 26,520,519(+) CCGAC(A/C)GAGAG upstream-variant-2KB
rs1535275 -- 26,520,539(+) GCCAG(C/G)CTTCC upstream-variant-2KB
rs1535276 -- 26,520,713(+) AGTAA(C/T)GTTGA upstream-variant-2KB
rs3087629 -- 26,526,836(+) CTATA(A/G)GAATA nc-transcript-variant

Relevant External Links for HCG11 Gene

HapMap Linkage Disequilibrium report
HCG11

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Structural Variations from Database of Genomic Variants (DGV) for HCG11 Gene

Disorders for HCG11 Gene

No disorders were found for HCG11 Gene.

No data available for UniProtKB/Swiss-Prot for HCG11 Gene

Publications for HCG11 Gene

  1. Complete sequencing and characterization of 21,243 full-length human cDNAs. (PMID: 14702039) Ota T. … Sugano S. (Nat. Genet. 2004) 3

Products for HCG11 Gene

  • DNA Methylation CpG Assay Predesigned for Pyrosequencing in human,mouse,rat
  • QIAGEN qRT-PCR Assays for microRNAs that regulate HCG11
    • QuantiTect SYBR Green Assays in human,mouse,rat
    • Pre-validated RT² qPCR Primer Assay in human,mouse,rat
    • QuantiFast Probe-based Assays in human,mouse,rat
    • Predesigned siRNA for gene silencing in human,mouse,rat for HCG11
    • Block miRNA regulation of HCG11 using miScript Target Protectors

    Sources for HCG11 Gene

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