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Aliases for HCFC2 Gene

Aliases for HCFC2 Gene

  • Host Cell Factor C2 2 3
  • C2 Factor 3 4
  • HCF-2 3 4
  • HCF2 3 6
  • Host Cell Factor 2 3

External Ids for HCFC2 Gene

Previous GeneCards Identifiers for HCFC2 Gene

  • GC12P102961
  • GC12P102962
  • GC12P104458
  • GC12P101517

Summaries for HCFC2 Gene

Entrez Gene Summary for HCFC2 Gene

  • This gene encodes one of two proteins which interact with VP16, a herpes simplex virus protein that initiates virus infection. Both the encoded protein and the original Herpes host cell factor interact with VP16 through a beta-propeller domain. The original Herpes host cell factor, however, is effective at initiating viral infection while the encoded protein is not. Transcripts of varying length due to alternative polyadenylation signals have been described. [provided by RefSeq, Jul 2008]

GeneCards Summary for HCFC2 Gene

HCFC2 (Host Cell Factor C2) is a Protein Coding gene. Diseases associated with HCFC2 include botulism and herpes simplex. Among its related pathways are Influenza A. GO annotations related to this gene include transcription coactivator activity. An important paralog of this gene is KLHDC1.

No data available for UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for HCFC2 Gene

Genomics for HCFC2 Gene

Regulatory Elements for HCFC2 Gene

Genomic Location for HCFC2 Gene

Start:
104,064,457 bp from pter
End:
104,106,524 bp from pter
Size:
42,068 bases
Orientation:
Plus strand

Genomic View for HCFC2 Gene

UCSC Golden Path with GeneCards custom track
Cytogenetic band:
Genomic Location for HCFC2 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for HCFC2 Gene

Proteins for HCFC2 Gene

  • Protein details for HCFC2 Gene (UniProtKB/Swiss-Prot)

    Protein Symbol:
    Q9Y5Z7-HCFC2_HUMAN
    Recommended name:
    Host cell factor 2
    Protein Accession:
    Q9Y5Z7
    Secondary Accessions:
    • B2R8Q5
    • C0H5X3

    Protein attributes for HCFC2 Gene

    Size:
    792 amino acids
    Molecular mass:
    86779 Da
    Quaternary structure:
    • Binds KMT2A/MLL1. Component of the MLL1/MLL complex, at least composed of KMT2A/MLL1, ASH2L, RBBP5, DPY30, WDR5, MEN1, HCFC1 and HCFC2.

    Alternative splice isoforms for HCFC2 Gene

    UniProtKB/Swiss-Prot:

neXtProt entry for HCFC2 Gene

Proteomics data for HCFC2 Gene at MOPED

Post-translational modifications for HCFC2 Gene

  • Modification sites at PhosphoSitePlus
  • Modification sites at neXtProt

Other Protein References for HCFC2 Gene

ENSEMBL proteins:
REFSEQ proteins:

No data available for DME Specific Peptides for HCFC2 Gene

Domains for HCFC2 Gene

Suggested Antigen Peptide Sequences for HCFC2 Gene

GenScript: Design optimal peptide antigens:

Graphical View of Domain Structure for InterPro Entry

Q9Y5Z7

UniProtKB/Swiss-Prot:

HCFC2_HUMAN :
  • Q9Y5Z7
Domain:
  • Contains 3 fibronectin type-III domains.
Similarity:
  • Contains 4 Kelch repeats.
genes like me logo Genes that share domains with HCFC2: view

No data available for Gene Families for HCFC2 Gene

Function for HCFC2 Gene

Gene Ontology (GO) - Molecular Function for HCFC2 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0003713 transcription coactivator activity TAS 10196288
GO:0005515 protein binding --
genes like me logo Genes that share ontologies with HCFC2: view

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes , Animal Models , miRNA , Transcription Factor Targeting and HOMER Transcription for HCFC2 Gene

Localization for HCFC2 Gene

Subcellular locations from UniProtKB/Swiss-Prot for HCFC2 Gene

Cytoplasm. Nucleus.

Subcellular locations from

COMPARTMENTS
Jensen Localization Image for HCFC2 Gene COMPARTMENTS Subcellular localization image for HCFC2 gene
Compartment Confidence
nucleus 5
mitochondrion 2
cytosol 1

Gene Ontology (GO) - Cellular Components for HCFC2 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0005634 nucleus IDA 10196288
GO:0005654 nucleoplasm IDA --
GO:0005737 cytoplasm IDA --
GO:0005886 plasma membrane IDA --
genes like me logo Genes that share ontologies with HCFC2: view

Pathways for HCFC2 Gene

SuperPathways for HCFC2 Gene

Superpath Contained pathways
1 Influenza A
genes like me logo Genes that share pathways with HCFC2: view

Pathways by source for HCFC2 Gene

1 KEGG pathway for HCFC2 Gene

Gene Ontology (GO) - Biological Process for HCFC2 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0000122 negative regulation of transcription from RNA polymerase II promoter ISS --
GO:0006357 regulation of transcription from RNA polymerase II promoter TAS 10196288
GO:0016032 viral process TAS 10196288
genes like me logo Genes that share ontologies with HCFC2: view

Transcripts for HCFC2 Gene

Unigene Clusters for HCFC2 Gene

Host cell factor C2:
Representative Sequences:

Alternative Splicing Database (ASD) splice patterns (SP) for HCFC2 Gene

ExUns: 1a · 1b ^ 2 ^ 3 ^ 4 ^ 5 ^ 6 ^ 7 ^ 8 ^ 9 ^ 10 ^ 11 ^ 12 ^ 13 ^ 14a · 14b ^ 15 ^ 16 ^ 17a · 17b · 17c · 17d
SP1: - - -
SP2: - - - -
SP3: - - -
SP4:
SP5:
SP6:

Relevant External Links for HCFC2 Gene

GeneLoc Exon Structure for
HCFC2
ECgene alternative splicing isoforms for
HCFC2

Expression for HCFC2 Gene

mRNA expression in normal human tissues for HCFC2 Gene

Integrated Proteomics: protein expression from ProteomicsDB, PaxDb, MOPED, and MaxQB for HCFC2 Gene

SOURCE GeneReport for Unigene cluster for HCFC2 Gene Hs.506558

mRNA Expression by UniProt/SwissProt for HCFC2 Gene

Q9Y5Z7-HCFC2_HUMAN
Tissue specificity: Highly expressed in testis. Detected at lower levels in spleen, thymus, prostate, ovary, small intestine and colon.
genes like me logo Genes that share expressions with HCFC2: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery and mRNA differential expression in normal tissues for HCFC2 Gene

Orthologs for HCFC2 Gene

This gene was present in the common ancestor of chordates.

Orthologs for HCFC2 Gene

Organism Taxonomy Gene Similarity Type Details
chimpanzee
(Pan troglodytes)
Mammalia HCFC2 35
  • 99.66 (n)
  • 99.37 (a)
HCFC2 36
  • 99 (a)
OneToOne
cow
(Bos Taurus)
Mammalia HCFC2 35
  • 94.53 (n)
  • 94.82 (a)
HCFC2 36
  • 95 (a)
OneToOne
dog
(Canis familiaris)
Mammalia HCFC2 35
  • 94.18 (n)
  • 95.06 (a)
HCFC2 36
  • 95 (a)
OneToOne
mouse
(Mus musculus)
Mammalia Hcfc2 35
  • 86.03 (n)
  • 88.55 (a)
Hcfc2 16
Hcfc2 36
  • 90 (a)
OneToOne
oppossum
(Monodelphis domestica)
Mammalia HCFC2 36
  • 74 (a)
OneToOne
platypus
(Ornithorhynchus anatinus)
Mammalia HCFC2 36
  • 74 (a)
OneToOne
rat
(Rattus norvegicus)
Mammalia Hcfc2 35
  • 86.46 (n)
  • 90.61 (a)
chicken
(Gallus gallus)
Aves HCFC2 35
  • 74.96 (n)
  • 75.81 (a)
HCFC2 36
  • 71 (a)
OneToOne
lizard
(Anolis carolinensis)
Reptilia HCFC2 36
  • 67 (a)
OneToOne
tropical clawed frog
(Silurana tropicalis)
Amphibia hcfc2 35
  • 73.05 (n)
  • 74.41 (a)
Str.17237 35
zebrafish
(Danio rerio)
Actinopterygii Dr.18404 35
hcfc2 36
  • 53 (a)
OneToOne
Species with no ortholog for HCFC2:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • fruit fly (Drosophila melanogaster)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • rainbow trout (Oncorhynchus mykiss)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea squirt (Ciona intestinalis)
  • sea squirt (Ciona savignyi)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)

Evolution for HCFC2 Gene

ENSEMBL:
Gene Tree for HCFC2 (if available)
TreeFam:
Gene Tree for HCFC2 (if available)

Paralogs for HCFC2 Gene

Paralogs for HCFC2 Gene

Selected SIMAP similar genes for HCFC2 Gene using alignment to 3 proteins:

Pseudogenes.org Pseudogenes for HCFC2 Gene

genes like me logo Genes that share paralogs with HCFC2: view

Variants for HCFC2 Gene

Sequence variations from dbSNP and Humsavar for HCFC2 Gene

SNP ID Clin Chr 12 pos Sequence Context AA Info Type MAF
rs715664 -- 104,105,299(+) CTTTC(C/T)TCTCT utr-variant-3-prime
rs1177468 -- 104,091,279(-) TAGTT(C/G)TGCTC intron-variant
rs1179229 -- 104,091,795(-) ttata(G/T)atgaa intron-variant
rs1179230 -- 104,091,189(-) AGTCT(A/C)TAGAC intron-variant
rs1183217 -- 104,087,404(-) TACTG(C/T)AGTAT intron-variant

Structural Variations from Database of Genomic Variants (DGV) for HCFC2 Gene

Variant ID Type Subtype PubMed ID
esv2746313 CNV Deletion 23290073
esv2746314 CNV Deletion 23290073

Relevant External Links for HCFC2 Gene

HapMap Linkage Disequilibrium report
HCFC2

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot for HCFC2 Gene

Disorders for HCFC2 Gene

MalaCards: The human disease database

MalaCards: The human disease database. (2) Diseases for HCFC2 Gene including...

Search for HCFC2 Gene in MalaCards »

(1) University of Copenhagen DISEASES for HCFC2 Gene

Relevant External Links for HCFC2

Genetic Association Database (GAD)
HCFC2
genes like me logo Genes that share disorders with HCFC2: view

No data available for UniProtKB/Swiss-Prot for HCFC2 Gene

Publications for HCFC2 Gene

  1. Herpes simplex virus transactivator VP16 discriminates between HCF-1 and a novel family member, HCF-2. (PMID: 10196288) Johnson K.M. … Wilson A.C. (J. Virol. 1999) 2 3 4
  2. Leukemia proto-oncoprotein MLL forms a SET1-like histone methyltransferase complex with menin to regulate Hox gene expression. (PMID: 15199122) Yokoyama A. … Cleary M.L. (Mol. Cell. Biol. 2004) 3 4
  3. The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC). (PMID: 15489334) Gerhard D.S. … Malek J. (Genome Res. 2004) 3 4
  4. Diversification of transcriptional modulation: large-scale identification and characterization of putative alternative promoters of human genes. (PMID: 16344560) Kimura K. … Sugano S. (Genome Res. 2006) 3
  5. Toward a confocal subcellular atlas of the human proteome. (PMID: 18029348) Barbe L. … Andersson-Svahn H. (Mol. Cell Proteomics 2008) 3

Products for HCFC2 Gene

Sources for HCFC2 Gene

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