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Aliases for HCFC1-AS1 Gene

Subcategory (RNA class) for HCFC1-AS1 Gene

non-coding RNA

Quality Score for this RNA gene is

3

Aliases for HCFC1-AS1 Gene

  • HCFC1 Antisense RNA 1 2 3 5
  • HCFC1 Antisense RNA 1 (Non-Protein Coding) 2

External Ids for HCFC1-AS1 Gene

Previous GeneCards Identifiers for HCFC1-AS1 Gene

  • GC00U933178
  • GC0XP153238

Summaries for HCFC1-AS1 Gene

GeneCards Summary for HCFC1-AS1 Gene

HCFC1-AS1 (HCFC1 Antisense RNA 1) is an RNA Gene, and is affiliated with the non-coding RNA class.

Additional gene information for HCFC1-AS1 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for HCFC1-AS1 Gene

Genomics for HCFC1-AS1 Gene

GeneHancer (GH) Regulatory Elements for HCFC1-AS1 Gene

Promoters and enhancers for HCFC1-AS1 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH0XI153965 Promoter/Enhancer 2.6 EPDnew FANTOM5 Ensembl ENCODE dbSUPER 550.8 +1.8 1751 10 HDGF PKNOX1 CLOCK FOXA2 ARNT ZFP64 SIN3A FEZF1 DMAP1 ZNF2 TMEM187 HCFC1 HCFC1-AS1 SNORA70 SLC10A3 SNORA56 DKC1 EMD FAM3A ABCD1
GH0XI153922 Promoter/Enhancer 2.3 EPDnew Ensembl ENCODE dbSUPER 12.9 -42.0 -41950 7.7 HDGF HNRNPUL1 PKNOX1 CLOCK SMAD1 ARNT ARID4B SIN3A DMAP1 ZNF2 ARHGAP4 TMEM187 HCFC1 SNORA70 DKC1 SLC10A3 EMD HCFC1-AS1 FLNA GC0XP153923
GH0XI154038 Enhancer 1.3 FANTOM5 Ensembl ENCODE 13.1 +74.5 74539 9.2 CTCF ZSCAN4 ZNF133 MAX EBF1 CEBPG FEZF1 ZIC2 RAD21 TEAD3 TMEM187 HCFC1 HCFC1-AS1 IKBKG ABCD1 DNASE1L1 MECP2 FAM50A ATP6AP1 EMD
GH0XI154001 Enhancer 1.1 Ensembl ENCODE 13.9 +33.6 33645 1.7 PKNOX1 ATF1 YY1 ZNF121 ZNF766 RUNX3 CAVIN1 REST ZNF592 MEF2D HCFC1 SNORA70 HCFC1-AS1 TMEM187 IRAK1 SNORA56 PLXNA3 DKC1 MIR718 MIR3202-2
GH0XI154056 Enhancer 1.1 Ensembl ENCODE 13.1 +88.4 88412 1.8 FOXA2 MLX ARID4B DMAP1 ZNF2 ZNF48 ETS1 ATF7 FOS RXRA IRAK1 TMEM187 HCFC1 HCFC1-AS1 PLXNA3 ATP6AP1 PIR60620 MECP2
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data dump

GeneHancers around HCFC1-AS1 on UCSC Golden Path with GeneCards custom track

Genomic Locations for HCFC1-AS1 Gene

Genomic Locations for HCFC1-AS1 Gene
chrX:153,968,765-153,970,091
(GRCh38/hg38)
Size:
1,327 bases
Orientation:
Plus strand
chrX:153,234,776-153,235,538
(GRCh37/hg19)

Genomic View for HCFC1-AS1 Gene

Genes around HCFC1-AS1 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
HCFC1-AS1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for HCFC1-AS1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for HCFC1-AS1 Gene

Proteins for HCFC1-AS1 Gene

Post-translational modifications for HCFC1-AS1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for HCFC1-AS1 Gene

Domains & Families for HCFC1-AS1 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for HCFC1-AS1 Gene

Function for HCFC1-AS1 Gene

Phenotypes From GWAS Catalog for HCFC1-AS1 Gene

Animal Model Products

Clone Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for HCFC1-AS1 Gene

Localization for HCFC1-AS1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for HCFC1-AS1 Gene

Pathways & Interactions for HCFC1-AS1 Gene

SuperPathways for HCFC1-AS1 Gene

No Data Available

Interacting Proteins for HCFC1-AS1 Gene

Gene Ontology (GO) - Biological Process for HCFC1-AS1 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for HCFC1-AS1 Gene

Drugs & Compounds for HCFC1-AS1 Gene

No Compound Related Data Available

Transcripts for HCFC1-AS1 Gene

mRNA/cDNA for HCFC1-AS1 Gene

(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Clone Products

Alternative Splicing Database (ASD) splice patterns (SP) for HCFC1-AS1 Gene

No ASD Table

Relevant External Links for HCFC1-AS1 Gene

GeneLoc Exon Structure for
HCFC1-AS1
ECgene alternative splicing isoforms for
HCFC1-AS1

Expression for HCFC1-AS1 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for HCFC1-AS1 Gene

mRNA differential expression in normal tissues according to GTEx for HCFC1-AS1 Gene

This gene is overexpressed in Pituitary (x8.9).
genes like me logo Genes that share expression patterns with HCFC1-AS1: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for HCFC1-AS1 Gene

Orthologs for HCFC1-AS1 Gene

Evolution for HCFC1-AS1 Gene

ENSEMBL:
Gene Tree for HCFC1-AS1 (if available)
TreeFam:
Gene Tree for HCFC1-AS1 (if available)

No data available for Orthologs for HCFC1-AS1 Gene

Paralogs for HCFC1-AS1 Gene

No data available for Paralogs for HCFC1-AS1 Gene

Variants for HCFC1-AS1 Gene

Sequence variations from dbSNP and Humsavar for HCFC1-AS1 Gene

SNP ID Clin Chr 0X pos Variation AA Info Type
rs1001314634 -- 153,968,155(+) C/T upstream_transcript_variant
rs1001600478 -- 153,968,480(+) G/A upstream_transcript_variant
rs1002203457 -- 153,970,134(+) G/C downstream_transcript_variant
rs1002721404 -- 153,969,892(+) G/A non_coding_transcript_variant
rs1004553119 -- 153,968,518(+) T/C upstream_transcript_variant

Structural Variations from Database of Genomic Variants (DGV) for HCFC1-AS1 Gene

Variant ID Type Subtype PubMed ID
esv33199 CNV gain+loss 17666407
esv33784 CNV gain+loss 17666407
nsv469867 CNV loss 16826518

Additional Variant Information for HCFC1-AS1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
HCFC1-AS1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for HCFC1-AS1 Gene

Disorders for HCFC1-AS1 Gene

Additional Disease Information for HCFC1-AS1

No disorders were found for HCFC1-AS1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for HCFC1-AS1 Gene

Publications for HCFC1-AS1 Gene

No publications were found for HCFC1-AS1 Gene.

Products for HCFC1-AS1 Gene

Sources for HCFC1-AS1 Gene

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