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Aliases for HCFC1-AS1 Gene

Subcategory (RNA class) for HCFC1-AS1 Gene

non-coding RNA

Quality Score for this RNA gene is

3

Aliases for HCFC1-AS1 Gene

  • HCFC1 Antisense RNA 1 2 3 5
  • HCFC1 Antisense RNA 1 (Non-Protein Coding) 2

External Ids for HCFC1-AS1 Gene

Previous GeneCards Identifiers for HCFC1-AS1 Gene

  • GC00U933178
  • GC0XP153238

Summaries for HCFC1-AS1 Gene

GeneCards Summary for HCFC1-AS1 Gene

HCFC1-AS1 (HCFC1 Antisense RNA 1) is an RNA Gene, and is affiliated with the non-coding RNA class.

No data available for Entrez Gene Summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for HCFC1-AS1 Gene

Genomics for HCFC1-AS1 Gene

Regulatory Elements for HCFC1-AS1 Gene

Enhancers for HCFC1-AS1 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH0XF154001 1.3 Ensembl ENCODE 13.9 +33.7 33736 2.6 ATF1 PKNOX1 YY1 ZNF121 ELK1 KLF13 REST CREB3 MEF2D PBX2 HCFC1 TMEM187 HCFC1-AS1 IRAK1 EMD PLXNA3 MIR718 MIR3202-2
GH0XF154051 0.5 ENCODE 13.1 +82.5 82529 0.4 ZNF263 CTCF ZNF654 ZNF143 SMC3 TRIM22 ZNF384 RAD21 IRAK1 MIR718 HCFC1 TMEM187 HCFC1-AS1 PIR60620
GH0XF154049 0.5 ENCODE 13.1 +81.1 81120 0.2 GATA3 PKNOX1 CTBP1 MIR718 IRAK1 HCFC1 TMEM187 HCFC1-AS1 ATP6AP1 PIR60620
GH0XF154038 1.2 FANTOM5 Ensembl ENCODE 13.1 +74.5 74539 9.2 ZNF133 FEZF1 RAD21 ZNF121 GATA2 SCRT2 FOS EGR2 CEBPB NR2F2 TMEM187 HCFC1 MIR718 HCFC1-AS1 PLXNA3 IKBKG ABCD1 DNASE1L1 MECP2 FAM50A
GH0XF154036 0.6 ENCODE 13.1 +68.0 67990 0.2 ZNF341 GLIS1 ZIC2 TMEM187 HCFC1 HCFC1-AS1 IRAK1 PIR60620
- Elite enhancer/Elite enhancer-gene association Download Table
Download GeneHancer data dump

Enhancers around HCFC1-AS1 on UCSC Golden Path with GeneCards custom track

Genomic Location for HCFC1-AS1 Gene

Chromosome:
X
Start:
153,968,765 bp from pter
End:
153,970,091 bp from pter
Size:
1,327 bases
Orientation:
Plus strand

Genomic View for HCFC1-AS1 Gene

Genes around HCFC1-AS1 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
HCFC1-AS1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for HCFC1-AS1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for HCFC1-AS1 Gene

Proteins for HCFC1-AS1 Gene

Post-translational modifications for HCFC1-AS1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for HCFC1-AS1 Gene

Domains & Families for HCFC1-AS1 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for HCFC1-AS1 Gene

Function for HCFC1-AS1 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for HCFC1-AS1 Gene

Localization for HCFC1-AS1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for HCFC1-AS1 Gene

Pathways & Interactions for HCFC1-AS1 Gene

SuperPathways for HCFC1-AS1 Gene

No Data Available

Interacting Proteins for HCFC1-AS1 Gene

Gene Ontology (GO) - Biological Process for HCFC1-AS1 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for HCFC1-AS1 Gene

Transcripts for HCFC1-AS1 Gene

mRNA/cDNA for HCFC1-AS1 Gene

(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for HCFC1-AS1 Gene

No ASD Table

Relevant External Links for HCFC1-AS1 Gene

GeneLoc Exon Structure for
HCFC1-AS1
ECgene alternative splicing isoforms for
HCFC1-AS1

Expression for HCFC1-AS1 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for HCFC1-AS1 Gene

mRNA differential expression in normal tissues according to GTEx for HCFC1-AS1 Gene

This gene is overexpressed in Pituitary (x8.9).
genes like me logo Genes that share expression patterns with HCFC1-AS1: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners and mRNA Expression by UniProt/SwissProt for HCFC1-AS1 Gene

Orthologs for HCFC1-AS1 Gene

Evolution for HCFC1-AS1 Gene

ENSEMBL:
Gene Tree for HCFC1-AS1 (if available)
TreeFam:
Gene Tree for HCFC1-AS1 (if available)

No data available for Orthologs for HCFC1-AS1 Gene

Paralogs for HCFC1-AS1 Gene

No data available for Paralogs for HCFC1-AS1 Gene

Variants for HCFC1-AS1 Gene

Sequence variations from dbSNP and Humsavar for HCFC1-AS1 Gene

SNP ID Clin Chr 0X pos Sequence Context AA Info Type
rs111268862 -- 153,967,515(+) ACATT(A/G)GAGCA intron-variant, upstream-variant-2KB
rs112319071 -- 153,968,147(+) GCCAA(A/G)GCTCT intron-variant, upstream-variant-2KB
rs11798116 -- 153,969,936(+) CTGCA(A/G)AAGTA intron-variant, nc-transcript-variant
rs12556144 -- 153,966,976(+) CCTTC(C/T)ACAGG intron-variant, upstream-variant-2KB
rs138560941 -- 153,968,765(+) TAAAA(C/T)TGCAT intron-variant, nc-transcript-variant

Structural Variations from Database of Genomic Variants (DGV) for HCFC1-AS1 Gene

Variant ID Type Subtype PubMed ID
esv33199 CNV gain+loss 17666407
esv33784 CNV gain+loss 17666407
nsv469867 CNV loss 16826518

Relevant External Links for HCFC1-AS1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
HCFC1-AS1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for HCFC1-AS1 Gene

Disorders for HCFC1-AS1 Gene

Relevant External Links for HCFC1-AS1

Atlas of Genetics and Cytogenetics in Oncology and Haematology:
HCFC1-AS1

No disorders were found for HCFC1-AS1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for HCFC1-AS1 Gene

Publications for HCFC1-AS1 Gene

No publications were found for HCFC1-AS1 Gene.

Products for HCFC1-AS1 Gene

Sources for HCFC1-AS1 Gene

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