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Aliases for HCCAT5 Gene

Subcategory (RNA class) for HCCAT5 Gene

lncRNA

Quality Score for this RNA gene is

3

Aliases for HCCAT5 Gene

  • Hepatocellular Carcinoma Associated Transcript 5 (Non-Protein Coding) 2 3
  • HTA 3 6
  • Hepatoma Associated Protein 3
  • Hepatoma Associated Gene 2
  • FJ222407 3

External Ids for HCCAT5 Gene

ORGUL Members for HCCAT5 Gene

Summaries for HCCAT5 Gene

GeneCards Summary for HCCAT5 Gene

HCCAT5 (Hepatocellular Carcinoma Associated Transcript 5 (Non-Protein Coding)) is an RNA Gene, and is affiliated with the lncRNA class. Diseases associated with HCCAT5 include hepatocellular carcinoma.

No data available for Entrez Gene Summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for HCCAT5 Gene

Genomics for HCCAT5 Gene

Genomic Location for HCCAT5 Gene

Start:
73,092,349 bp from pter
End:
73,093,774 bp from pter
Size:
1,426 bases
Orientation:
Plus strand

Genomic View for HCCAT5 Gene

UCSC Golden Path with GeneCards custom track
Cytogenetic band:
Genomic Location for HCCAT5 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for HCCAT5 Gene

No data available for Regulatory Elements for HCCAT5 Gene

Proteins for HCCAT5 Gene

Post-translational modifications for HCCAT5 Gene

No Post-translational modifications

No data available for DME Specific Peptides for HCCAT5 Gene

Domains for HCCAT5 Gene

Gene Families for HCCAT5 Gene

HGNC:
  • LNCRNA :Long non-coding RNAs

Graphical View of Domain Structure for InterPro Entry

genes like me logo Genes that share domains with HCCAT5: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for HCCAT5 Gene

Function for HCCAT5 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Animal Models , miRNA , Transcription Factor Targeting and HOMER Transcription for HCCAT5 Gene

Localization for HCCAT5 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for HCCAT5 Gene

Pathways for HCCAT5 Gene

SuperPathways for HCCAT5 Gene

No Data Available

Interacting Proteins for HCCAT5 Gene

Gene Ontology (GO) - Biological Process for HCCAT5 Gene

None

No data available for Pathways by source for HCCAT5 Gene

Transcripts for HCCAT5 Gene

mRNA/cDNA for HCCAT5 Gene

(2) Selected AceView cDNA sequences:
(1) REFSEQ mRNAs :
(2) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for HCCAT5 Gene

No ASD Table

Relevant External Links for HCCAT5 Gene

GeneLoc Exon Structure for
HCCAT5
ECgene alternative splicing isoforms for
HCCAT5

Expression for HCCAT5 Gene

mRNA expression in normal human tissues for HCCAT5 Gene

mRNA differential expression in normal tissues according to GTEx for HCCAT5 Gene

This gene is overexpressed in Artery - Tibial (13.3), Brain - Spinal cord (cervical c-1) (8.5), Artery - Aorta (7.9), and Artery - Coronary (5.2).
genes like me logo Genes that share expressions with HCCAT5: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein expression and mRNA Expression by UniProt/SwissProt for HCCAT5 Gene

Orthologs for HCCAT5 Gene

Evolution for HCCAT5 Gene

ENSEMBL:
Gene Tree for HCCAT5 (if available)
TreeFam:
Gene Tree for HCCAT5 (if available)

No data available for Orthologs for HCCAT5 Gene

Paralogs for HCCAT5 Gene

No data available for Paralogs for HCCAT5 Gene

Variants for HCCAT5 Gene

Sequence variations from dbSNP and Humsavar for HCCAT5 Gene

SNP ID Clin Chr 16 pos Sequence Context AA Info Type MAF
rs1183965 -- 73,094,247(-) GTGAA(C/T)TTCCA downstream-variant-500B
rs1183966 -- 73,090,739(-) gtttt(G/T)ttttt upstream-variant-2KB
rs7189194 -- 73,092,959(+) CTTCG(G/T)TTATG nc-transcript-variant
rs8047760 -- 73,093,386(+) AAAGT(C/G)TGGCA intron-variant
rs8050909 -- 73,090,457(+) GGCAA(A/T)AAGTA upstream-variant-2KB

Relevant External Links for HCCAT5 Gene

HapMap Linkage Disequilibrium report
HCCAT5

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Structural Variations from Database of Genomic Variants (DGV) for HCCAT5 Gene

Disorders for HCCAT5 Gene

MalaCards: The human disease database

MalaCards: The human disease database. (1) Diseases for HCCAT5 Gene including...

Search for HCCAT5 Gene in MalaCards »
genes like me logo Genes that share disorders with HCCAT5: view

No data available for UniProtKB/Swiss-Prot for HCCAT5 Gene

Publications for HCCAT5 Gene

  1. Identification of HTA as a novel-specific marker for human hepatocellular carcinoma. (PMID: 20130911) Liu Y. … Li G. (J. Cancer Res. Clin. Oncol. 2010) 2 3
  2. Molecular clone and functional study of a novel hepatoma associated gene. (PMID: 23314567) Liu Y. … Li Y. (Int. J. Oncol. 2013) 2 3
  3. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg R.L. … Marra M.A. (Proc. Natl. Acad. Sci. U.S.A. 2002) 3

Products for HCCAT5 Gene

  • QIAGEN qRT-PCR Assays for microRNAs that regulate HCCAT5
    • QuantiTect SYBR Green Assays in human,mouse,rat
    • Pre-validated RT² qPCR Primer Assay in human,mouse,rat
    • QuantiFast Probe-based Assays in human,mouse,rat
    • Predesigned siRNA for gene silencing in human,mouse,rat for HCCAT5
    • Block miRNA regulation of HCCAT5 using miScript Target Protectors

    Sources for HCCAT5 Gene

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