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Aliases for HCCAT5 Gene

Subcategory (RNA class) for HCCAT5 Gene

non-coding RNA

Quality Score for this RNA gene is


Aliases for HCCAT5 Gene

  • Hepatocellular Carcinoma Associated Transcript 5 (Non-Protein Coding) 2 3 5
  • Hepatoma Associated Protein 3
  • Hepatoma Associated Gene 2
  • FJ222407 3
  • HTA 3

External Ids for HCCAT5 Gene

Summaries for HCCAT5 Gene

GeneCards Summary for HCCAT5 Gene

HCCAT5 (Hepatocellular Carcinoma Associated Transcript 5 (Non-Protein Coding)) is an RNA Gene, and is affiliated with the non-coding RNA class.

No data available for Entrez Gene Summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for HCCAT5 Gene

Genomics for HCCAT5 Gene

Regulatory Elements for HCCAT5 Gene

Enhancers for HCCAT5 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH16F073091 1.2 Ensembl ENCODE 0.8 +0.8 759 2.3 ELF3 ZNF133 RAD21 ZNF2 RARA YY1 RFX5 RCOR1 MIXL1 KLF11 HCCAT5 C16orf47
GH16F073095 0.9 Ensembl 0.8 +3.4 3439 1.4 PKNOX1 INSM2 FEZF1 BRCA1 ZNF2 ZNF366 SCRT2 FOS ZNF263 YY2 ZFHX3 HCCAT5 C16orf47
GH16F073082 1.1 Ensembl ENCODE 0.4 -9.6 -9608 1.4 GTF2F1 TBP JUN MAX RAD21 BRCA1 ZIC2 RFX5 GTF3C2 ZNF366 DHX38 C16orf47 ZFHX3 HCCAT5 GC16P073065
GH16F073124 1.4 FANTOM5 Ensembl ENCODE 0.3 +32.3 32284 1.1 TBP KLF1 JUN ZNF76 MAX ZNF2 ZNF366 PRDM10 RCOR1 ZNF600 C16orf47 HCCAT5
GH16F073122 1.1 FANTOM5 Ensembl ENCODE 0.3 +30.7 30713 1.5 PRDM10 ZBTB20 TRIM28 ZFHX3 C16orf47 HCCAT5
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around HCCAT5 on UCSC Golden Path with GeneCards custom track

Genomic Location for HCCAT5 Gene

73,092,349 bp from pter
73,093,774 bp from pter
1,426 bases
Plus strand

Genomic View for HCCAT5 Gene

Genes around HCCAT5 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
HCCAT5 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for HCCAT5 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for HCCAT5 Gene

Proteins for HCCAT5 Gene

Post-translational modifications for HCCAT5 Gene

No Post-translational modifications

No data available for DME Specific Peptides for HCCAT5 Gene

Domains & Families for HCCAT5 Gene

Suggested Antigen Peptide Sequences for HCCAT5 Gene

GenScript: Design optimal peptide antigens:

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains and UniProtKB/Swiss-Prot for HCCAT5 Gene

Function for HCCAT5 Gene

Phenotypes for HCCAT5 Gene

GenomeRNAi human phenotypes for HCCAT5:
genes like me logo Genes that share phenotypes with HCCAT5: view

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for HCCAT5 Gene

Localization for HCCAT5 Gene

Subcellular locations from

Extracellular space Cytosol Plasma membrane Cytoskeleton Lysosome Endosome Peroxisome ER Golgi Apparatus Nucleus Mitochondrion 0 1 2 3 4 5 Confidence
COMPARTMENTS Subcellular localization image for HCCAT5 gene
Compartment Confidence
extracellular 1

No data available for Subcellular locations from UniProtKB/Swiss-Prot and Gene Ontology (GO) - Cellular Components for HCCAT5 Gene

Pathways & Interactions for HCCAT5 Gene

SuperPathways for HCCAT5 Gene

No Data Available

Interacting Proteins for HCCAT5 Gene

Gene Ontology (GO) - Biological Process for HCCAT5 Gene


No data available for Pathways by source and SIGNOR curated interactions for HCCAT5 Gene

Transcripts for HCCAT5 Gene

mRNA/cDNA for HCCAT5 Gene

(1) REFSEQ mRNAs :
(2) Selected AceView cDNA sequences:
(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for HCCAT5 Gene

No ASD Table

Relevant External Links for HCCAT5 Gene

GeneLoc Exon Structure for
ECgene alternative splicing isoforms for

Expression for HCCAT5 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for HCCAT5 Gene

mRNA differential expression in normal tissues according to GTEx for HCCAT5 Gene

This gene is overexpressed in Artery - Tibial (x13.3), Brain - Spinal cord (cervical c-1) (x8.5), Artery - Aorta (x7.9), and Artery - Coronary (x5.2).

NURSA nuclear receptor signaling pathways regulating expression of HCCAT5 Gene:

genes like me logo Genes that share expression patterns with HCCAT5: view

Primer Products

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners and mRNA Expression by UniProt/SwissProt for HCCAT5 Gene

Orthologs for HCCAT5 Gene

Evolution for HCCAT5 Gene

Gene Tree for HCCAT5 (if available)
Gene Tree for HCCAT5 (if available)

No data available for Orthologs for HCCAT5 Gene

Paralogs for HCCAT5 Gene

No data available for Paralogs for HCCAT5 Gene

Variants for HCCAT5 Gene

Sequence variations from dbSNP and Humsavar for HCCAT5 Gene

SNP ID Clin Chr 16 pos Sequence Context AA Info Type
rs111418905 -- 73,090,830(+) CACTT(G/T)AGCCC upstream-variant-2KB
rs115352411 -- 73,093,720(+) GCGGC(A/G)TTCCC nc-transcript-variant
rs117748063 -- 73,090,706(+) ACATG(A/G)TGAAA upstream-variant-2KB
rs1183965 -- 73,094,247(-) GTGAA(C/T)TTCCA downstream-variant-500B
rs1183966 -- 73,090,739(-) gtttt(G/T)ttttt upstream-variant-2KB

Structural Variations from Database of Genomic Variants (DGV) for HCCAT5 Gene

Variant ID Type Subtype PubMed ID
nsv7285 OTHER inversion 18451855

Relevant External Links for HCCAT5 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for HCCAT5 Gene

Disorders for HCCAT5 Gene

Relevant External Links for HCCAT5

Atlas of Genetics and Cytogenetics in Oncology and Haematology:

No disorders were found for HCCAT5 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for HCCAT5 Gene

Publications for HCCAT5 Gene

  1. Molecular clone and functional study of a novel hepatoma associated gene. (PMID: 23314567) Liu Y. … Li Y. (Int. J. Oncol. 2013) 2 3 64
  2. Identification of HTA as a novel-specific marker for human hepatocellular carcinoma. (PMID: 20130911) Liu Y. … Li G. (J. Cancer Res. Clin. Oncol. 2010) 2 3 64
  3. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg R.L. … Marra M.A. (Proc. Natl. Acad. Sci. U.S.A. 2002) 3 64

Products for HCCAT5 Gene

Sources for HCCAT5 Gene

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