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Aliases & Descriptions for HBXIP
(According to
1HGNC,
2Entrez Gene,
3UniProtKB/Swiss-Prot,
4UniProtKB/TrEMBL, 5OMIM, 6GeneLoc
, and/or 7Ensembl,
8miRBase) About This Section
|
| Aliases |
|---|
| MGC71071 1, 2 | | XIP 1, 2, 3 |
| | | Descriptions |
|---|
| HBV X-interacting protein 3 | | HBX-interacting protein 2, 3 | | hepatitis B virus x interacting protein 2 | | hepatitis B virus x-interacting protein 2 | | hepatitis B virus x-interacting protein (9.6kD) 2 |
|
| | Search outside databases for aliases for HBXIP genePrevious GC identifers: GC01M111360 GC01M109810 GC01M110045 GC01M110242 |
Summaries for HBXIP(According to Entrez Gene,
Wikipedia's
Gene Wiki,
UniProtKB/Swiss-Prot,
and/or
UniProtKB/TrEMBL)
About This Section
| EntrezGene summary for HBXIP: This gene encodes a protein that specifically complexes with the C-terminus of hepatitis B virus X protein (HBx). The function of this protein is to negatively regulate HBx activity and thus to alter the replication life cycle of the virus. [provided by RefSeq] UniProtKB/Swiss-Prot: HBXIP_HUMAN, O43504Function: When complexed to BIRC5, interferes with apoptosome assembly, preventing recruitment of pro-caspase-9 to oligomerized APAF1, thereby selectively suppressing apoptosis initiated via the mitochondrial/cytochrome c pathway. Down-regulates hepatitis B virus (HBV) replicationGene Wiki entry for HBXIP |
Genomic Location for HBXIP
(According to
GeneLoc and/or
HGNC, and/or
Entrez Gene (NCBI build 36),
and/or miRBase,
Genomic Views according to
UCSC and
Ensembl,
Transcription factor binding sites according to
SABiosciences) About This Section
| Genomic View: UCSC Golden Path with GeneCards custom track
Transcription factor binding sites upstream to the HBXIP gene 
Entrez Gene cytogenetic band: 1p13.3 Ensembl cytogenetic band: 1p13.3 HGNC cytogenetic band: 1p12HBXIP Gene in genomic location: bands according to Ensembl, locations according to
(and/or Entrez Gene and/or Ensembl if different)
 GeneLoc gene densities for chromosome 1 GeneLoc Exon Structure GeneLoc location for GC01M110655:
(about GC identifiers)
Start:
|
110,745,394 bp from pter |
End:
|
110,752,083 bp from pter |
Size:
|
6,690 bases |
Orientation:
|
minus strand |
RefSeq DNA sequence:- NC_000001.9 NT_019273.18
| Proteins for HBXIP
(According to
1UniProtKB,
and/or Ensembl,
Phosphorylation sites according to 2Phosphosite,
RefSeq according to NCBI,
PDB rendering according to OCA and/or Proteopedia,
Recombinant Proteins
from Invitrogen,
Millipore,
Sigma-Aldrich,
R&D Systems,
Enzo Life Sciences,
Abnova,
OriGene and/or,
Abcam,
Biochemical Assays by
Invitrogen,
Millipore,
R&D Systems,
Cell Signaling Technology, and/or
Enzo Life Sciences,
Ontologies according to Gene
Ontology Consortium 01 Apr 2009 and
Entrez Gene,
Antibodies by Invitrogen,
Millipore,
Sigma-Aldrich,
R&D Systems,
Cell Signaling Technology,
Abcam,
Abnova, and/or
Novus Biologicals)
About This Section
| UniProtKB/Swiss-Prot: HBXIP_HUMAN, O43504 (See
protein sequence)Recommended Name: Hepatitis B virus X-interacting protein Size: 91 amino acids; 9614 Da
Subunit: Interacts with phosphorylated BIRC5; the resulting complex binds pro-caspase-9, as well as active caspase-9, but much less efficiently. Interacts with SUPV3L1. Interacts with hepatitis B virus (HBV) oncoprotein HBX C-terminus
Subcellular location: Cytoplasm
Miscellaneous: Suppression of caspase activation by the BIRC5/HBXIP complex is increased in the presence of HBX
Secondary accessions: Q6IBD8Post-translational modifications:
Phosphorylated upon DNA damage, probably by ATM or ATR1
View phosphorylation sites using PhosphoSite2
REFSEQ proteins: NP_006393.2
ENSEMBL proteins: ENSP00000256644 ENSP00000358790
Human Recombinant Proteins               OriGene Purified Recombinant Human Protein: HBXIP 
2 Gene Ontology (GO) cellular component terms (links to tree view): About this table
Antibodies for HBXIP: Assays for HBXIP: | Protein
Domains/ Families for HBXIP(According to InterPro, ProtoNet,
UniProtKB, and/or BLOCKS,
Sets of similar genes according to GeneDecks)
About This Section
| ProtoNet protein and cluster: O43504 UniProtKB/Swiss-Prot: HBXIP_HUMAN, O43504Similarity: Belongs to the HBXIP family | Gene Function for HBXIP
(According to MGI Jun 06 2009, UniProtKB,
IUBMB,and/or Genatlas,
shRNA from
OriGene,
Sigma-Aldrich, RNAi from
Sigma-Aldrich,
RNAi Products,
Clones, and
Q-PCR Products
from Invitrogen,
Millipore,
OriGene, and/or
Abnova,
siRNAs from
Applied Biosystems,
SYBR primers from OriGene,
Cell-based Assays from Millipore,
Ontologies according to Gene Ontology Consortium 01 Apr 2009 via
Entrez Gene.)
About This Section
|               OriGene 29mer shRNA kit in GFP-retroviral vector: NM_006402
Applied Biosystems Silencer® siRNAs for HBXIP
Sigma-Aldrich siRNA for HBXIP  Sigma-Aldrich shRNA for HBXIP  Explore Sigma-Aldrich super-pooled esiRNAs 
              OriGene GFP tagged cDNA clone in CMV expression vector: NM_006402                                  Myc/DDK tagged cDNA clone in CMV expression vector: NM_006402                                  untagged cDNA clones in CMV expression vector (see all 2): NM_006402 
Primers: Browse
Quantitative PCR Central at Invitrogen for Q-PCR LUX™ Primers               OriGene genome-wide validated SYBR primer pairs: NM_006402
UniProtKB/Swiss-Prot: HBXIP_HUMAN, O43504Function: When complexed to BIRC5, interferes with apoptosome assembly, preventing recruitment of pro-caspase-9 to oligomerized APAF1, thereby selectively suppressing apoptosis initiated via the mitochondrial/cytochrome c pathway. Down-regulates hepatitis B virus (HBV) replication1 Gene Ontology (GO) molecular function term (links to tree view): About this table | Pathways & Interactions for HBXIP
(Pathways according to Invitrogen
(maps by GeneGo),
Millipore,
Cell Signaling Technology,
Sigma-Aldrich,
KEGG
and/or UniProtKB,
Sets of similar genes according to GeneDecks,
Proteins Network according to
SABiosciences,
Interactions according to 1UniProtKB,
2MINT, and/or
3STRING,
with links to IntAct and
Ensembl,
Ontologies according to Gene Ontology Consortium 01 Apr 2009 via
Entrez Gene.)
About This Section
|
Gene Network CentralTM Interacting Genes and Proteins Network for HBXIP 
5/14 Interacting proteins for HBXIP (O435042 ENSP000002566443) via UniProtKB, MINT, and/or STRING (see all 14
)About this table
4 Gene Ontology (GO) biological process terms (links to tree view): About this table
|
Drugs & Compounds for HBXIP(Chemical Compounds according to UniProtKB, Enzo Life Sciences,
Sigma-Aldrich, Tocris Bioscience, and/or
Novoseek and Drugs according to
Enzo Life Sciences and/or
PharmGKB)
About This Section
|
Browse Tocris compounds for HBXIP 3 Novoseek chemical compound relationships for HBXIP gene
About this table
|
Transcripts for HBXIP(GenBank/EMBL/DDBJ Accessions according to
Unigene
(Build 219 Homo sapiens; Jun 2 2009) or GenBank, RefSeq according to Entrez Gene,
DOTS (version 10), and/or
AceView,
non coding RNAs according to
RNAdb,
ESTs according to GeneTide,
exon structure from GeneLoc,
alternative splicing isoforms according to ASD and/or
ECgene,
RNAi Products from Invitrogen,
Millipore, and/or
Abnova,
siRNAs from Applied Biosystems,
Sigma-Aldrich,
shRNA from
Sigma-Aldrich,
OriGene,
Tagged/untagged cDNA clones from
OriGene, Expression Assays from Applied Biosystems) About This Section
|               OriGene 29mer shRNA kit in GFP-retroviral vector: NM_006402
Sigma-Aldrich siRNA for HBXIP  Sigma-Aldrich shRNA for HBXIP  Explore Sigma-Aldrich super-pooled esiRNAs 
Applied Biosystems Silencer® siRNAs: NM_006402 REFSEQ mRNAs for HBXIP gene: NM_006402.2
Applied Biosystems TaqMan ® Gene Expression Assays: NM_006402               OriGene GFP tagged cDNA clone in CMV expression vector: NM_006402                                  Myc/DDK tagged cDNA clone in CMV expression vector: NM_006402                                  untagged cDNA clones in CMV expression vector (see all 2): NM_006402  Additional cDNA sequence: AF029890.1 AY623819.1 BC062619.1 CR456866.1 CR542130.1 CR602221.1 10 DOTS entries: DT.219581 DT.100819655 DT.86853027 DT.121326297 DT.121326300 DT.121326308 DT.121326313 DT.455717 DT.92432900 DT.121419014 24/390 AceView cDNA sequences (see all 390
):AI188911 AA131708 CB529219 AA995522 CR542130 AA442400 BU951785 AA760790 AA860073 CB125188 AA336492 BQ636393 AA040361 BU734283 BQ271819 CB158516 BM673048 AI167843 AA488862 AA310122 AI185664 BM856576 AA723202 BU736893
highest scoring ESTs for HBXIP:AF029890 AA029338 AA040360 AA131609 AA131613 AA186552 AA192745 AA299763 AA328469 AA359845 Unigene Cluster for HBXIP: Hepatitis B virus x interacting protein Hs.439815 [show with all ESTs]Unigene Representative Sequence: BU957124
GeneLoc Exon Structure
5 Alternative Splicing Database (ASD) splice patterns (SP) for HBXIP
| ExUns: | 1a | · | 1b | · | 1c | ^ | 2a | · | 2b | ^ | 3a | · | 3b | ^ | 4a | · | 4b | ^ | 5a | · | 5b | · | 5c | |
| SP1: | |   | |   | |   | - |   | |   | - |   | |   | |   | - |   | |   | |   | |   | |
| SP2: | |   | |   | |   | - |   | - |   | - |   | |   | |   | - |   | |   | |   | |   | |
| SP3: | |   | |   | |   | |   | |   | - |   | |   | |   | - |   | |   | |   | |   | |
| SP4: | |   | |   | |   | - |   | - |   | - |   | |   | |   | |   | |   | |   | |   | |
| SP5: | |   | |   | |   | |   | |   | |   | |   | |   | - |   | |   | |   | |   |
About this scheme
ECgene alternative splicing isoforms for HBXIP
2 Ensembl transcripts including schematic representations: ENST00000256644
ENST00000369775
|
Expression for HBXIP
(Experimental results according to
1GeneNote
and GNF BioGPS,
probe sets-to-genes annotations according to
2GeneAnnot ,
3GeneTide ,
Sets of similar genes according to GeneDecks,
Electronic Northern calculations according to data from
UniGene (Build 219 Homo sapiens),
SAGE tags according to
CGAP,
plus additional links to
SOURCE, and/or
GNF
BioGPS, and/or
EXPOLDB, and/or
UniProtKB,
Expression Assays from
Applied Biosystems
)
About This Section
| HBXIP expression in normal and diseased human tissues
Applied Biosystems TaqMan ® Gene Expression Assays for HBXIP
1 / 2 / 3 5 probe-sets matching HBXIP gene Data from
(Publications) and GNF BioGPS About these images About these images
CGAP SAGE TAG: TTTTGAAGCA
SOURCE GeneReport for Unigene cluster: Hs.439815
Expression variation in blood from EXPOLDB for HBXIP UniProtKB/Swiss-Prot: HBXIP_HUMAN, O43504Tissue specificity: Highly expressed in skeletal and cardiac muscle, followed by pancreas, kidney, liver, brain, placenta and lung. Elevated levels in both cancerous and non-cancerous liver tissue of patients with chronic HBV infection compared with hepatic tissue without HBV infection |
Orthologs for HBXIP
(Orthologs according to
1,2HomoloGene (2older version, for species not in 1newer version),
3euGenes,
4SGD
and/or
5MGI Jun 06 2009,
with possible further links to
Flybase
and/or
WormBase,
Gene Trees according to Ensembl)
About This Section
|
Orthologs for HBXIP gene from 5/9 species (see all 9
)
About this table Species with no ortholog for HBXIP
ENSEMBL Gene Tree for HBXIP | Paralogs for HBXIP(Paralogs according to 1HomoloGene and 2Ensembl, Pseudogenes according to 3Pseudogene.org) About This Section
| -- |
SNPs/Variants for HBXIP(According to the
1NCBI SNP Database,
2Ensembl,
3PupaSUITE, and
UniProtKB,
Linkage Disequilibrium by HapMap,
Genotyping Reagents from
Applied Biosystems)
About This Section
|
HapMap Linkage Disequilibrium images for HBXIP (up to first 250kb)
|
Disorders & Mutations for HBXIP
(in which this Gene is Involved, According to
OMIM, UniProtKB,
Novoseek, PharmGKB,
Genatlas, GeneTests,
Blood group antigen gene mutations by BGMUT,
HGMD, GAD,
HuGE Navigator,
BCGD,
and/or TGDB.)
About This Section
|
OMIM: 608521
1 Novoseek disease relationship for HBXIP gene
About this table
|
Medical News for HBXIP(Possibly Related Articles in
Doctor's Guide)
About This Section
| -- |
Publications for HBXIP (in
PubMed.
Associations of this gene to articles via
1Novoseek,
2HGNC,
3Entrez Gene,
4UniProtKB/Swiss-Prot,
5UniProtKB/TrEMBL,
6GAD, and/or
7PharmGKB)
About This Section
| 10/38 PubMed articles for HBXIP gene (see all 38
):- Cloning and characterization of a novel hepatitis B virus x binding protein that inhibits viral replication. (PubMed id 9499022)2, 3, 4 Melegari M.... Wands J.R. (1998)
- HBXIP functions as a cofactor of survivin in apoptosis suppression. (PubMed id 12773388)1, 3, 4 Marusawa H....Reed J.C. (2003)
- Human ATP-dependent RNA/DNA helicase hSuv3p interacts with the cofactor of survivin HBXIP. (PubMed id 16176273)3, 4 Minczuk M....Stepien P.P. (2005)
- The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC). (PubMed id 15489334)3, 4 Gerhard D.S....Malek J. (2004)
- Involvement of hepatitis B X-interacting protein (HBXIP) in proliferation regulation of cells. (PubMed id 17303008)1, 3 Wang F.Z....Ye L.H. (2007)
- Promotion of cell proliferation by HBXIP via upregulation of human telomerase reverse transcriptase in human mesenchymal stem cells. (PubMed id 18158869)1, 3 Wang F.Z....Zhang X.D. (2008)
- Applying a highly specific and reproducible cDNA RDA method to clone garlic up-regulated genes in human gastric cancer cells. (PubMed id 11925594)1, 3 Li Y. and Lu Y.Y. (2002)
- Interaction of hepatitis B viral oncoprotein with cellular target HBXIP dysregulates centrosome dynamics and mitotic spindle formation. (PubMed id 18032378)3 Wen Y....Reed J.C. (2008)
- Hepatitis B virus X protein stimulates the mitochondrial translocation of Raf-1 via oxidative stress. (PubMed id 17428866)3 Chen J. and Siddiqui A. (2007)
- ATM and ATR substrate analysis reveals extensive protein networks responsive to DNA damage. (PubMed id 17525332)4 Matsuoka S.... Elledge S.J. (2007)
|
Search for HBXIP
(in PubMed,
OMIM, and NCBI Bookshelf) About This Section
|
|
Genome Databases showing HBXIP
(According to
Entrez Gene,
HGNC,
AceView,
euGenes,
Ensembl,
miRBase,
ECgene,
and/or
H-InvDB)
About This Section
|
| Other Databases showing HBXIP
(According to HUGE)
About This Section
| -- |
Specialized Databases showing HBXIP(According to ATLAS, HORDE, IMGT, MTDB, LEIDEN, UniProtKB/Swiss-Prot, and/or UniProtKB/TrEMBL, Wikipedia and/or GeneReviews via UniProtKB/Swiss-Prot) About This Section
|
| About This Section
| --
| Services for HBXIP(Reagents available from Applied Biosystems, Antibodies and assays by Cell
Signaling Technology, Abcam, Novus Biologicals, Sigma-Aldrich, R&D Systems, Millipore, Abnova, and/or Invitrogen, Clones available from OriGene,and/or Invitrogen, Drugs and/or compounds by Sigma-Aldrich, Enzo Life Sciences, and/or Tocris Bioscience) About This Section
| 
 Products for HBXIP:

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Incremental update: 13 Oct 2009
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