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Aliases & Descriptions for HBE1
(According to
1HGNC,
2Entrez Gene,
3UniProtKB/Swiss-Prot,
4UniProtKB/TrEMBL, 5OMIM, 6GeneLoc
, and/or 7Ensembl,
8miRBase) About This Section
|
| Aliases |
|---|
| Epsilon-globin 3 | | HBE 1, 2, 3 | | OTTHUMP00000069642 2 |
| | | Descriptions |
|---|
| Hemoglobin epsilon chain 3 | | epsilon globin 2 | | hemoglobin, epsilon 1 2 |
|
| | Search outside databases for aliases for HBE1 genePrevious GC identifers: GC11M006037 GC11M005591 GC11M005249 GC11M005214 GC11M005233 |
Summaries for HBE1(According to Entrez Gene,
Wikipedia's
Gene Wiki,
UniProtKB/Swiss-Prot,
and/or
UniProtKB/TrEMBL)
About This Section
| EntrezGene summary for HBE1: The epsilon globin gene (HBE) is normally expressed in the embryonic yolk sac: two epsilon chains together with two zeta chains (an alpha-like globin) constitute the embryonic hemoglobin Hb Gower I; two epsilon chains together with two alpha chains form the embryonic Hb Gower II. Both of these embryonic hemoglobins are normally supplanted by fetal, and later, adult hemoglobin. The five beta-like globin genes are found within a 45 kb cluster on chromosome 11 in the following order: 5'-epsilon - G-gamma - A-gamma - delta - beta-3' [provided by RefSeq] UniProtKB/Swiss-Prot: HBE_HUMAN, P02100Function: The epsilon chain is a beta-type chain of early mammalian embryonic hemoglobinGene Wiki entry for HBE1 |
Genomic Location for HBE1
(According to
GeneLoc and/or
HGNC, and/or
Entrez Gene (NCBI build 36),
and/or miRBase,
Genomic Views according to
UCSC and
Ensembl,
Transcription factor binding sites according to
SABiosciences) About This Section
| Genomic View: UCSC Golden Path with GeneCards custom track
Transcription factor binding sites upstream to the HBE1 gene 
Entrez Gene cytogenetic band: 11p15.5 Ensembl cytogenetic band: 11p15.4 HGNC cytogenetic band: 11p15.5HBE1 Gene in genomic location: bands according to Ensembl, locations according to
(and/or Entrez Gene and/or Ensembl if different)
 GeneLoc gene densities for chromosome 11 GeneLoc Exon Structure GeneLoc location for GC11M005247:
(about GC identifiers)
Start:
|
5,246,156 bp from pter |
End:
|
5,483,423 bp from pter |
Size:
|
237,268 bases |
Orientation:
|
minus strand |
RefSeq DNA sequence:- NC_000011.8 NT_009237.17
| Proteins for HBE1
(According to
1UniProtKB,
and/or Ensembl,
Phosphorylation sites according to 2Phosphosite,
RefSeq according to NCBI,
PDB rendering according to OCA and/or Proteopedia,
Recombinant Proteins
from Invitrogen,
Millipore,
Sigma-Aldrich,
R&D Systems,
Enzo Life Sciences,
Abnova,
OriGene and/or,
Abcam,
Biochemical Assays by
Invitrogen,
Millipore,
R&D Systems,
Cell Signaling Technology, and/or
Enzo Life Sciences,
Ontologies according to Gene
Ontology Consortium 01 Apr 2009 and
Entrez Gene,
Antibodies by Invitrogen,
Millipore,
Sigma-Aldrich,
R&D Systems,
Cell Signaling Technology,
Abcam,
Abnova, and/or
Novus Biologicals)
About This Section
| UniProtKB/Swiss-Prot: HBE_HUMAN, P02100 (See
protein sequence)Recommended Name: Hemoglobin subunit epsilon Size: 147 amino acids; 16203 Da
Subunit: Heterotetramer of two alpha chains and two epsilon chains in early embryonic hemoglobin Gower-2; two zeta chains and two epsilon chains in early embryonic hemoglobin Gower-1
PDB structures from and Proteopedia :1A9W (3D)
 Post-translational modifications:
View phosphorylation sites using PhosphoSite2
REFSEQ proteins: NP_005321.1
ENSEMBL proteins: ENSP00000292896 ENSP00000380104 ENSP00000369586
Human Recombinant Proteins Browse Origene for full length recombinant human proteins expressed in human HEK293 cells 
1 Gene Ontology (GO) cellular component term (links to tree view): About this table
Antibodies for HBE1: Assays for HBE1: | Protein
Domains/ Families for HBE1(According to InterPro, ProtoNet,
UniProtKB, and/or BLOCKS,
Sets of similar genes according to GeneDecks)
About This Section
| - Graphical View of Domain Structure for InterPro Entry P02100
ProtoNet protein and cluster: P02100 1 Blocks protein family: IPB002337 Beta haemoglobin signature
UniProtKB/Swiss-Prot: HBE_HUMAN, P02100Similarity: Belongs to the globin family | Gene Function for HBE1
(According to MGI Jun 06 2009, UniProtKB,
IUBMB,and/or Genatlas,
shRNA from
OriGene,
Sigma-Aldrich, RNAi from
Sigma-Aldrich,
RNAi Products,
Clones, and
Q-PCR Products
from Invitrogen,
Millipore,
OriGene, and/or
Abnova,
siRNAs from
Applied Biosystems,
SYBR primers from OriGene,
Cell-based Assays from Millipore,
Ontologies according to Gene Ontology Consortium 01 Apr 2009 via
Entrez Gene.)
About This Section
|               OriGene 29mer shRNA kit in GFP-retroviral vector: NM_005330
Applied Biosystems Silencer® siRNAs for HBE1
Sigma-Aldrich siRNA for HBE1  Sigma-Aldrich shRNA for HBE1  Explore Sigma-Aldrich super-pooled esiRNAs 
              OriGene GFP tagged cDNA clone in CMV expression vector: NM_005330                                  Myc/DDK tagged cDNA clone in CMV expression vector: NM_005330                                  untagged cDNA clone in CMV expression vector: NM_005330 
Primers: Browse
Quantitative PCR Central at Invitrogen for Q-PCR LUX™ Primers               OriGene genome-wide validated SYBR primer pairs: NM_005330
UniProtKB/Swiss-Prot: HBE_HUMAN, P02100Function: The epsilon chain is a beta-type chain of early mammalian embryonic hemoglobinGenatlas biochemistry entry for HBE1:hemoglobin,epsilon 1,embryonic2 MGI mutant phenotypes (inferred from 3 alleles ) (MGI details for Hbb-y):
4 Gene Ontology (GO) molecular function terms (links to tree view): About this table | Pathways & Interactions for HBE1
(Pathways according to Invitrogen
(maps by GeneGo),
Millipore,
Cell Signaling Technology,
Sigma-Aldrich,
KEGG
and/or UniProtKB,
Sets of similar genes according to GeneDecks,
Proteins Network according to
SABiosciences,
Interactions according to 1UniProtKB,
2MINT, and/or
3STRING,
with links to IntAct and
Ensembl,
Ontologies according to Gene Ontology Consortium 01 Apr 2009 via
Entrez Gene.)
About This Section
|
Gene Network CentralTM Interacting Genes and Proteins Network for HBE1 
--2 Gene Ontology (GO) biological process terms (links to tree view): About this table
|
Drugs & Compounds for HBE1(Chemical Compounds according to UniProtKB, Enzo Life Sciences,
Sigma-Aldrich, Tocris Bioscience, and/or
Novoseek and Drugs according to
Enzo Life Sciences and/or
PharmGKB)
About This Section
|
Browse Tocris compounds for HBE1
|
Transcripts for HBE1(GenBank/EMBL/DDBJ Accessions according to
Unigene
(Build 219 Homo sapiens; Jun 2 2009) or GenBank, RefSeq according to Entrez Gene,
DOTS (version 10), and/or
AceView,
non coding RNAs according to
RNAdb,
ESTs according to GeneTide,
exon structure from GeneLoc,
alternative splicing isoforms according to ASD and/or
ECgene,
RNAi Products from Invitrogen,
Millipore, and/or
Abnova,
siRNAs from Applied Biosystems,
Sigma-Aldrich,
shRNA from
Sigma-Aldrich,
OriGene,
Tagged/untagged cDNA clones from
OriGene, Expression Assays from Applied Biosystems) About This Section
|               OriGene 29mer shRNA kit in GFP-retroviral vector: NM_005330
Sigma-Aldrich siRNA for HBE1  Sigma-Aldrich shRNA for HBE1  Explore Sigma-Aldrich super-pooled esiRNAs 
Applied Biosystems Silencer® siRNAs: NM_005330 REFSEQ mRNAs for HBE1 gene: NM_005330.3
Applied Biosystems TaqMan ® Gene Expression Assays: NM_005330               OriGene GFP tagged cDNA clone in CMV expression vector: NM_005330                                  Myc/DDK tagged cDNA clone in CMV expression vector: NM_005330                                  untagged cDNA clone in CMV expression vector: NM_005330  Additional cDNA sequence: BC015537.2 CR541912.1 7 DOTS entries: DT.120723442 DT.95262173 DT.95262172 DT.120723319 DT.100806001 DT.309847 DT.95323075 4 AceView cDNA sequences:NM_005330 CR541912 BC015537 BC022184
highest scoring ESTs for HBE1:BP432922 BP428807 AA089473 AA092238 BE789678 BF211542 BG220871 BG496579 BP429018 BP430146 Unigene Cluster for HBE1: Hemoglobin, epsilon 1 Hs.655195 [show with all ESTs]Unigene Representative Sequence: BC015537
GeneLoc Exon Structure
3 Ensembl transcripts including schematic representations: ENST00000292896
ENST00000396895
ENST00000380237
|
Expression for HBE1
(Experimental results according to
1GeneNote
and GNF BioGPS,
probe sets-to-genes annotations according to
2GeneAnnot ,
3GeneTide ,
Sets of similar genes according to GeneDecks,
Electronic Northern calculations according to data from
UniGene (Build 219 Homo sapiens),
SAGE tags according to
CGAP,
plus additional links to
SOURCE, and/or
GNF
BioGPS, and/or
EXPOLDB, and/or
UniProtKB,
Expression Assays from
Applied Biosystems
)
About This Section
| HBE1 expression in normal and diseased human tissues
Applied Biosystems TaqMan ® Gene Expression Assays for HBE1
1 / 2 / 3 3 probe-sets matching HBE1 gene Data from
(Publications) and GNF BioGPS About these images About these images
CGAP SAGE TAG: GGGACTGGGC
SOURCE GeneReport for Unigene cluster: Hs.655195
Expression variation in blood from EXPOLDB for HBE1 UniProtKB/Swiss-Prot: HBE_HUMAN, P02100Tissue specificity: Red blood cells |
Orthologs for HBE1
(Orthologs according to
1,2HomoloGene (2older version, for species not in 1newer version),
3euGenes,
4SGD
and/or
5MGI Jun 06 2009,
with possible further links to
Flybase
and/or
WormBase,
Gene Trees according to Ensembl)
About This Section
|
Orthologs for HBE1 gene from 5/7 species (see all 7
)
About this table Species with no ortholog for HBE1
ENSEMBL Gene Tree for HBE1 | Paralogs for HBE1(Paralogs according to 1HomoloGene and 2Ensembl, Pseudogenes according to 3Pseudogene.org) About This Section
| Paralogs for HBE1 gene
- HBB2 HBG22 CYGB2 HBG12 HBD2
|
SNPs/Variants for HBE1(According to the
1NCBI SNP Database,
2Ensembl,
3PupaSUITE, and
UniProtKB,
Linkage Disequilibrium by HapMap,
Genotyping Reagents from
Applied Biosystems)
About This Section
|
HapMap Linkage Disequilibrium images for HBE1 (up to first 250kb)
|
Disorders & Mutations for HBE1
(in which this Gene is Involved, According to
OMIM, UniProtKB,
Novoseek, PharmGKB,
Genatlas, GeneTests,
Blood group antigen gene mutations by BGMUT,
HGMD, GAD,
HuGE Navigator,
BCGD,
and/or TGDB.)
About This Section
|
OMIM: 142100
1 Novoseek disease relationship for HBE1 gene
| Disease |
Score |
Articles |
PubMed IDs for Articles with Shared Sentences (# sentences) |
| erythroleukemia |
58.99 |
2 |
1431310 (2) |
About this table
Human Gene Mutation Database: HBE1 Genetic Association Database: HBE1 Human Genome Epidemiology Navigator: HBE1 (4 documents)
|
Medical News for HBE1(Possibly Related Articles in
Doctor's Guide)
About This Section
| -- |
Publications for HBE1 (in
PubMed.
Associations of this gene to articles via
1Novoseek,
2HGNC,
3Entrez Gene,
4UniProtKB/Swiss-Prot,
5UniProtKB/TrEMBL,
6GAD, and/or
7PharmGKB)
About This Section
| 10/133 PubMed articles for HBE1 gene (see all 133
):- The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC). (PubMed id 15489334)3, 4 Gerhard D.S....Malek J. (2004)
- Should we screen for globin gene mutations in blood samples with mean corpuscular volume (MCV) greater than 80 fL in areas with a high prevalence of thalassaemia? (PubMed id 11304851)3, 6 Chan L.C....Chui D.H. (2001)
- Few reports of hemoglobin E/beta-thalassemia in Northeast India: underdiagnosis or complete exclusion of beta-thalassemia by hemoglobin E. (PubMed id 11132230)3, 6 Krishnamurti L. (2000)
- Crystal structure of a human embryonic haemoglobin: the carbonmonoxy form of Gower II (alpha2 epsilon2) haemoglobin at 2.9-A resolution. (PubMed id 9665850)3, 4 Sutherland-Smith A.J....Baker E.N. (1998)
- A review of the molecular genetics of the human alpha-globin gene cluster. (PubMed id 2649166)2, 3 Higgs D.R....Weatherall D.J. (1989)
- Embryonic hemoglobin: sequence of the epsilon and zeta chains. (PubMed id 6172865)3, 4 Clegg J.B. (1981)
- The primary structure of the human epsilon-globin gene. (PubMed id 6254663)3, 4 Baralle F.E.... Proudfoot N.J. (1980)
- Genomic and phylogenetic footprinting at the epsilon-globin silencer region in intact human cells. (PubMed id 15157738)1, 3 Temple M.D....Murray V. (2004)
- Linear distance from the locus control region determines epsilon-globin transcriptional activity. (PubMed id 17548470)1, 3 Shimotsuma M....Tanimoto K. (2007)
- Embryonic hemoglobins are expressed in definitive cells. (PubMed id 10381533)1, 3 Luo H.Y....Alter B.P. (1999)
|
Search for HBE1
(in PubMed,
OMIM, and NCBI Bookshelf) About This Section
|
|
Genome Databases showing HBE1
(According to
Entrez Gene,
HGNC,
AceView,
euGenes,
Ensembl,
miRBase,
ECgene,
and/or
H-InvDB)
About This Section
|
| Other Databases showing HBE1
(According to HUGE)
About This Section
| -- |
Specialized Databases showing HBE1(According to ATLAS, HORDE, IMGT, MTDB, LEIDEN, UniProtKB/Swiss-Prot, and/or UniProtKB/TrEMBL, Wikipedia and/or GeneReviews via UniProtKB/Swiss-Prot) About This Section
|
| About This Section
| --
| Services for HBE1(Reagents available from Applied Biosystems, Antibodies and assays by Cell
Signaling Technology, Abcam, Novus Biologicals, Sigma-Aldrich, R&D Systems, Millipore, Abnova, and/or Invitrogen, Clones available from OriGene,and/or Invitrogen, Drugs and/or compounds by Sigma-Aldrich, Enzo Life Sciences, and/or Tocris Bioscience) About This Section
| 
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