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Aliases & Descriptions for HAVCR2
(According to
1HGNC,
2Entrez Gene,
3UniProtKB/Swiss-Prot,
4UniProtKB/TrEMBL, 5OMIM, 6GeneLoc
, and/or 7Ensembl,
8miRBase) About This Section
|
| Aliases |
|---|
| FLJ14428 1, 2 | | HAVcr-2 3 | | KIM-3 2 | | TIM-3 3 | | TIM3 1, 2, 3 | | TIMD-3 3 | | TIMD3 1, 2, 3 | | Tim-3 1, 2 |
| | | Descriptions |
|---|
| T cell immunoglobulin mucin 3 2 | | T cell immunoglobulin mucin-3 2 | | T-cell immunoglobulin and mucin domain-containing protein 3 3 | | T-cell membrane protein 3 3 | | hepatitis A virus cellular receptor 2 2 | | kidney injury molecule-3 2 |
|
| | Search outside databases for aliases for HAVCR2 genePrevious GC identifers: GC05M157063 GC05M156448 GC05M156493 |
Summaries for HAVCR2(According to Entrez Gene,
Wikipedia's
Gene Wiki,
UniProtKB/Swiss-Prot,
and/or
UniProtKB/TrEMBL)
About This Section
| EntrezGene summary for HAVCR2: CD4 (MIM 186940)-positive T helper lymphocytes can be divided into types 1 (Th1) and 2 (Th2) on the basis of their cytokine secretion patterns. Th1 cells and their associated cytokines are involved in cell-mediated immunity to intracellular pathogens and delayed-type hypersensitivity reactions, whereas Th2 cells are involved in the control of extracellular helminthic infections and the promotion of atopic and allergic diseases. The 2 types of cells also cross-regulate the functions of the other. TIM3 is a Th1-specific cell surface protein that regulates macrophage activation and enhances the severity of experimental autoimmune encephalomyelitis in mice.[supplied by OMIM] UniProtKB/Swiss-Prot: TIMD3_HUMAN, Q8TDQ0Function: Regulates macrophage activation. Inhibits T-helper type 1 lymphocyte (Th1)-mediated auto- and alloimmune responses and promotes immunological tolerance. May be also involved in T-cell homing. Receptor for LGALS9Gene Wiki entry for HAVCR2 |
Genomic Location for HAVCR2
(According to
GeneLoc and/or
HGNC, and/or
Entrez Gene (NCBI build 36),
and/or miRBase,
Genomic Views according to
UCSC and
Ensembl,
Transcription factor binding sites according to
SABiosciences) About This Section
| Genomic View: UCSC Golden Path with GeneCards custom track
Transcription factor binding sites upstream to the HAVCR2 gene 
Entrez Gene cytogenetic band: 5q33.3 Ensembl cytogenetic band: 5q33.3 HGNC cytogenetic band: 5q34HAVCR2 Gene in genomic location: bands according to Ensembl, locations according to
(and/or Entrez Gene and/or Ensembl if different)
 GeneLoc gene densities for chromosome 5 GeneLoc Exon Structure GeneLoc location for GC05M156445:
(about GC identifiers)
Start:
|
156,445,421 bp from pter |
End:
|
156,468,716 bp from pter |
Size:
|
23,296 bases |
Orientation:
|
minus strand |
RefSeq DNA sequence:- NC_000005.8 NT_023133.12
| Proteins for HAVCR2
(According to
1UniProtKB,
and/or Ensembl,
Phosphorylation sites according to 2Phosphosite,
RefSeq according to NCBI,
PDB rendering according to OCA and/or Proteopedia,
Recombinant Proteins
from Invitrogen,
Millipore,
Sigma-Aldrich,
R&D Systems,
Enzo Life Sciences,
Abnova,
OriGene and/or,
Abcam,
Biochemical Assays by
Invitrogen,
Millipore,
R&D Systems,
Cell Signaling Technology, and/or
Enzo Life Sciences,
Ontologies according to Gene
Ontology Consortium 01 Apr 2009 and
Entrez Gene,
Antibodies by Invitrogen,
Millipore,
Sigma-Aldrich,
R&D Systems,
Cell Signaling Technology,
Abcam,
Abnova, and/or
Novus Biologicals)
About This Section
| UniProtKB/Swiss-Prot: TIMD3_HUMAN, Q8TDQ0 (See
protein sequence)Recommended Name: Hepatitis A virus cellular receptor 2 precursor Size: 301 amino acids; 33351 Da
Subcellular location: Membrane; Single-pass type I membrane protein (Potential)
Secondary accessions: Q8WW60 Q96K94Alternative splicing: 2 isoforms: Q8TDQ0-1 Q8TDQ0-2 Post-translational modifications:
View phosphorylation sites using PhosphoSite2
REFSEQ proteins: NP_116171.3
ENSEMBL proteins: ENSP00000312002
Human Recombinant Proteins Browse Origene for full length recombinant human proteins expressed in human HEK293 cells 
2 Gene Ontology (GO) cellular component terms (links to tree view): | GO ID | Qualified GO term | Evidence | PubMed IDs |
|---|
| GO:0016020 | membrane |
IEA | -- | | GO:0016021 | integral to membrane |
IEA | -- | About this table
Antibodies for HAVCR2: Assays for HAVCR2: | Protein
Domains/ Families for HAVCR2(According to InterPro, ProtoNet,
UniProtKB, and/or BLOCKS,
Sets of similar genes according to GeneDecks)
About This Section
| - Graphical View of Domain Structure for InterPro Entry Q8TDQ0
ProtoNet protein and cluster: Q8TDQ0 1 Blocks protein family: IPB003599 Immunoglobulin subtype
UniProtKB/Swiss-Prot: TIMD3_HUMAN, Q8TDQ0Similarity: Belongs to the immunoglobulin superfamily. TIM familySimilarity: Contains 1 Ig-like V-type (immunoglobulin-like) domain | Gene Function for HAVCR2
(According to MGI Jun 06 2009, UniProtKB,
IUBMB,and/or Genatlas,
shRNA from
OriGene,
Sigma-Aldrich, RNAi from
Sigma-Aldrich,
RNAi Products,
Clones, and
Q-PCR Products
from Invitrogen,
Millipore,
OriGene, and/or
Abnova,
siRNAs from
Applied Biosystems,
SYBR primers from OriGene,
Cell-based Assays from Millipore,
Ontologies according to Gene Ontology Consortium 01 Apr 2009 via
Entrez Gene.)
About This Section
|                OriGene 29mer shRNA kit in GFP-retroviral vectors (see all 2): NM_032782
Applied Biosystems Silencer® siRNAs for HAVCR2
Sigma-Aldrich siRNA and siRNA Panels for HAVCR2  Sigma-Aldrich shRNA for HAVCR2  Explore Sigma-Aldrich super-pooled esiRNAs 
              OriGene GFP tagged cDNA clone in CMV expression vector: NM_032782                                  Myc/DDK tagged cDNA clone in CMV expression vector: NM_032782                                  untagged cDNA clones in CMV expression vector (see all 2): BC020843 
Primers: Browse
Quantitative PCR Central at Invitrogen for Q-PCR LUX™ Primers               OriGene genome-wide validated SYBR primer pairs: NM_032782
UniProtKB/Swiss-Prot: TIMD3_HUMAN, Q8TDQ0Function: Regulates macrophage activation. Inhibits T-helper type 1 lymphocyte (Th1)-mediated auto- and alloimmune responses and promotes immunological tolerance. May be also involved in T-cell homing. Receptor for LGALS91 MGI mutant phenotype (inferred from 1 allele ) (MGI details for Havcr2):
| Pathways & Interactions for HAVCR2
(Pathways according to Invitrogen
(maps by GeneGo),
Millipore,
Cell Signaling Technology,
Sigma-Aldrich,
KEGG
and/or UniProtKB,
Sets of similar genes according to GeneDecks,
Proteins Network according to
SABiosciences,
Interactions according to 1UniProtKB,
2MINT, and/or
3STRING,
with links to IntAct and
Ensembl,
Ontologies according to Gene Ontology Consortium 01 Apr 2009 via
Entrez Gene.)
About This Section
|
Gene Network CentralTM Interacting Genes and Proteins Network for HAVCR2 
3 Interacting proteins for HAVCR2 (ENSP000003120023) via UniProtKB, MINT, and/or STRINGAbout this table
|
Drugs & Compounds for HAVCR2(Chemical Compounds according to UniProtKB, Enzo Life Sciences,
Sigma-Aldrich, Tocris Bioscience, and/or
Novoseek and Drugs according to
Enzo Life Sciences and/or
PharmGKB)
About This Section
|
Browse Tocris compounds for HAVCR2
|
Transcripts for HAVCR2(GenBank/EMBL/DDBJ Accessions according to
Unigene
(Build 219 Homo sapiens; Jun 2 2009) or GenBank, RefSeq according to Entrez Gene,
DOTS (version 10), and/or
AceView,
non coding RNAs according to
RNAdb,
ESTs according to GeneTide,
exon structure from GeneLoc,
alternative splicing isoforms according to ASD and/or
ECgene,
RNAi Products from Invitrogen,
Millipore, and/or
Abnova,
siRNAs from Applied Biosystems,
Sigma-Aldrich,
shRNA from
Sigma-Aldrich,
OriGene,
Tagged/untagged cDNA clones from
OriGene, Expression Assays from Applied Biosystems) About This Section
|                OriGene 29mer shRNA kit in GFP-retroviral vectors (see all 2): NM_032782
Sigma-Aldrich siRNA and siRNA Panels for HAVCR2  Sigma-Aldrich shRNA for HAVCR2  Explore Sigma-Aldrich super-pooled esiRNAs 
Applied Biosystems Silencer® siRNAs: NM_032782 REFSEQ mRNAs for HAVCR2 gene: NM_032782.3
Applied Biosystems TaqMan ® Gene Expression Assays: NM_032782               OriGene GFP tagged cDNA clone in CMV expression vector: NM_032782                                  Myc/DDK tagged cDNA clone in CMV expression vector: NM_032782                                  untagged cDNA clones in CMV expression vector (see all 2): BC020843  Additional cDNA sequence: AF251707.1 AF450242.1 AF450243.1 AK027334.1 AK130144.1 AK314406.1 AY069944.1 BC020843.1 BC063431.1 6 DOTS entries: DT.431150 DT.97839520 DT.99928688 DT.120827768 DT.95084108 DT.40291503 24/51 AceView cDNA sequences (see all 51
):BQ581620 CD710266 AA664217 CA307836 AF450243 BI906710 AF450242 BX417090 BP340002 BM923617 AI202037 BP344854 AF251707 BG545730 AY069944 AI636449 BC020843 BM505682 BP373569 AL709094 AW025572 AJ705624 AK130144 AU279844
highest scoring ESTs for HAVCR2:AF251707 AF450242 AF450243 AL709094 AU279844 AW025572 AY069944 BC020843 BC063431 BQ278485 Unigene Cluster for HAVCR2: Hepatitis A virus cellular receptor 2 Hs.710500 [show with all ESTs]Unigene Representative Sequence: BC063431
GeneLoc Exon Structure
4 Alternative Splicing Database (ASD) splice patterns (SP) for HAVCR2
| ExUns: | 1 | ^ | 2a | · | 2b | ^ | 3a | · | 3b | ^ | 4 | ^ | 5 | ^ | 6a | · | 6b | ^ | 7 | |
| SP1: | |   | - |   | - |   | |   | |   | |   | |   | |   | |   | |   | |
| SP2: | |   | - |   | - |   | |   | |   | - |   | |   | |   | |   | |   | |
| SP3: | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |
| SP4: | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   |
About this scheme
ECgene alternative splicing isoforms for HAVCR2
1 Ensembl transcript including schematic representation: ENST00000307851
|
Expression for HAVCR2
(Experimental results according to
1GeneNote
and GNF BioGPS,
probe sets-to-genes annotations according to
2GeneAnnot ,
3GeneTide ,
Sets of similar genes according to GeneDecks,
Electronic Northern calculations according to data from
UniGene (Build 219 Homo sapiens),
SAGE tags according to
CGAP,
plus additional links to
SOURCE, and/or
GNF
BioGPS, and/or
EXPOLDB, and/or
UniProtKB,
Expression Assays from
Applied Biosystems
)
About This Section
| HAVCR2 expression in normal and diseased human tissues
Applied Biosystems TaqMan ® Gene Expression Assays for HAVCR2
1 / 2 / 3 6 probe-sets matching HAVCR2 gene Data from
(Publications) and GNF BioGPS About these images About these images
CGAP SAGE TAG: ATTTGCCTGC
SOURCE GeneReport for Unigene cluster: Hs.710500 UniProtKB/Swiss-Prot: TIMD3_HUMAN, Q8TDQ0Tissue specificity: T-helper type 1 lymphocyte (Th1)-specific |
Orthologs for HAVCR2
(Orthologs according to
1,2HomoloGene (2older version, for species not in 1newer version),
3euGenes,
4SGD
and/or
5MGI Jun 06 2009,
with possible further links to
Flybase
and/or
WormBase,
Gene Trees according to Ensembl)
About This Section
|
Orthologs for HAVCR2 gene from 3 species
| Organism |
Gene |
Locus |
Description |
Human Similarity |
NCBI accessions |
chimpanzee (Pan troglodytes) |
HAVCR21 |
-- |
hepatitis A virus cellular receptor 2 |
98.66(n) 97.44(a) |
462219 XM_518059.2 XP_518059.2 |
cow (Bos taurus) |
HAVCR21 |
-- |
hepatitis A virus cellular receptor 2 |
80.34(n) 69.06(a) |
768047 NM_001077105.1 NP_001070573.1 |
mouse (Mus musculus) |
Havcr25 |
11 |
hepatitis A virus cellular receptor 2 |
-- |
BC106852
|
About this table Species with no ortholog for HAVCR2
ENSEMBL Gene Tree for HAVCR2 | Paralogs for HAVCR2(Paralogs according to 1HomoloGene and 2Ensembl, Pseudogenes according to 3Pseudogene.org) About This Section
| Paralogs for HAVCR2 gene
- HAVCR12 TIMD42
|
SNPs/Variants for HAVCR2(According to the
1NCBI SNP Database,
2Ensembl,
3PupaSUITE, and
UniProtKB,
Linkage Disequilibrium by HapMap,
Genotyping Reagents from
Applied Biosystems)
About This Section
|
HapMap Linkage Disequilibrium images for HAVCR2 (up to first 250kb)
|
Disorders & Mutations for HAVCR2
(in which this Gene is Involved, According to
OMIM, UniProtKB,
Novoseek, PharmGKB,
Genatlas, GeneTests,
Blood group antigen gene mutations by BGMUT,
HGMD, GAD,
HuGE Navigator,
BCGD,
and/or TGDB.)
About This Section
|
OMIM: 606652
UniProtKB/Swiss-Prot: TIMD3_HUMAN, Q8TDQ0
Genetic variation in HAVCR2 may influence susceptibility to rheumatoid arthritis (RA) [MIM:180300]. RA is an inflammatory disease, primarily of the joints, with autoimmune features and a complex genetic component. It is characterized by inflammation of synovial tissues and the formation of rheumatoid pannus, which is capable of eroding adjacent cartilage and bone, causing subsequent joint destruction8 Novoseek disease relationships for HAVCR2 gene
About this table
Genetic Association Database: HAVCR2 Human Genome Epidemiology Navigator: HAVCR2 (12 documents)
|
Medical News for HAVCR2(Possibly Related Articles in
Doctor's Guide)
About This Section
| -- |
Publications for HAVCR2 (in
PubMed.
Associations of this gene to articles via
1Novoseek,
2HGNC,
3Entrez Gene,
4UniProtKB/Swiss-Prot,
5UniProtKB/TrEMBL,
6GAD, and/or
7PharmGKB)
About This Section
| 10/45 PubMed articles for HAVCR2 gene (see all 45
):- Th1-specific cell surface protein Tim-3 regulates macrophage activation and severity of an autoimmune disease. (PubMed id 11823861)1, 2, 3, 4 Monney L....Kuchroo V.K. (2002)
- The polymorphisms of Th1 cell surface gene Tim-3 are associated in a Korean population with rheumatoid arthritis. (PubMed id 15325803)1, 3, 4, 6 Chae S.-C.... Chung H.-T. (2004)
- The association of TIM-3 gene polymorphism with atopic disease in Korean population. (PubMed id 15603868)1, 3, 6 Chae S.C....Chung H.T. (2004)
- Genetic variants of the T-cell immunoglobulin mucin 1 but not the T-cell immunoglobulin mucin 3 gene are associated with asthma in an African American population. (PubMed id 15867855)1, 3, 6 Gao P.S....Huang S.K. (2005)
- Association of atopy and eczema with polymorphisms in T-cell immunoglobulin domain and mucin domain-IL-2-inducible T-cell kinase gene cluster in chromosome 5 q 33. (PubMed id 16159638)1, 3, 6 Graves P.E....Martinez F.D. (2005)
- The Tim-3 ligand galectin-9 negatively regulates T helper type 1 immunity. (PubMed id 16286920)3, 4 Zhu C.... Kuchroo V.K. (2005)
- Complete sequencing and characterization of 21,243 full-length human cDNAs. (PubMed id 14702039)3, 4 Ota T....Sugano S. (2004)
- The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC). (PubMed id 15489334)3, 4 Gerhard D.S....Malek J. (2004)
- Tim-3 inhibits T helper type 1-mediated auto- and alloimmune responses and promotes immunological tolerance. (PubMed id 14556005)3, 4 Sanchez-Fueyo A.... Strom T.B. (2003)
- Increased T cell immunoglobulin mucin-3 and its ligand in acquired aplastic anemia. (PubMed id 18485114)1, 3 Zhang J....Qu X. (2008)
|
Search for HAVCR2
(in PubMed,
OMIM, and NCBI Bookshelf) About This Section
|
|
Genome Databases showing HAVCR2
(According to
Entrez Gene,
HGNC,
AceView,
euGenes,
Ensembl,
miRBase,
ECgene,
and/or
H-InvDB)
About This Section
|
| Other Databases showing HAVCR2
(According to HUGE)
About This Section
| -- |
Specialized Databases showing HAVCR2(According to ATLAS, HORDE, IMGT, MTDB, LEIDEN, UniProtKB/Swiss-Prot, and/or UniProtKB/TrEMBL, Wikipedia and/or GeneReviews via UniProtKB/Swiss-Prot) About This Section
|
| About This Section
| --
| Services for HAVCR2(Reagents available from Applied Biosystems, Antibodies and assays by Cell
Signaling Technology, Abcam, Novus Biologicals, Sigma-Aldrich, R&D Systems, Millipore, Abnova, and/or Invitrogen, Clones available from OriGene,and/or Invitrogen, Drugs and/or compounds by Sigma-Aldrich, Enzo Life Sciences, and/or Tocris Bioscience) About This Section
| 
 Products for HAVCR2:

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