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Aliases for HAVCR1 Gene

Aliases for HAVCR1 Gene

  • Hepatitis A Virus Cellular Receptor 1 2 3
  • T-Cell Immunoglobulin Mucin Family Member 1 2 3
  • T-Cell Immunoglobulin Mucin Receptor 1 3 4
  • T-Cell Membrane Protein 1 3 4
  • Kidney Injury Molecule 1 3 4
  • HAVCR-1 3 4
  • TIMD-1 3 4
  • HAVCR 3 6
  • KIM-1 3 4
  • TIM-1 3 4
  • TIMD1 3 4
  • TIM1 3 4
  • KIM1 3 4
  • TIM 3 4
  • T-Cell Immunoglobulin And Mucin Domain-Containing Protein 1 4
  • T Cell Immunoglobin Domain And Mucin Domain Protein 1 3

External Ids for HAVCR1 Gene

Previous GeneCards Identifiers for HAVCR1 Gene

  • GC05M156391
  • GC05M156437
  • GC05M156389
  • GC05M151544
  • GC05M156456

Summaries for HAVCR1 Gene

Entrez Gene Summary for HAVCR1 Gene

  • The protein encoded by this gene is a membrane receptor for both human hepatitis A virus (HHAV) and TIMD4. The encoded protein may be involved in the moderation of asthma and allergic diseases. The reference genome represents an allele that retains a MTTVP amino acid segment that confers protection against atopy in HHAV seropositive individuals. Three transcript variants encoding the same protein have been found for this gene. [provided by RefSeq, Mar 2010]

GeneCards Summary for HAVCR1 Gene

HAVCR1 (Hepatitis A Virus Cellular Receptor 1) is a Protein Coding gene. Diseases associated with HAVCR1 include atopy and hepatitis. GO annotations related to this gene include virus receptor activity. An important paralog of this gene is HAVCR2.

UniProtKB/Swiss-Prot for HAVCR1 Gene

  • May play a role in T-helper cell development and the regulation of asthma and allergic diseases. Receptor for TIMD4 (By similarity). In case of human hepatitis A virus (HHAV) infection, functions as a cell-surface receptor for the virus. May play a role in kidney injury and repair.

Gene Wiki entry for HAVCR1 Gene

No data available for Tocris Summary , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for HAVCR1 Gene

Genomics for HAVCR1 Gene

Regulatory Elements for HAVCR1 Gene

Genomic Location for HAVCR1 Gene

Start:
157,028,978 bp from pter
End:
157,059,119 bp from pter
Size:
30,142 bases
Orientation:
Minus strand

Genomic View for HAVCR1 Gene

UCSC Golden Path with GeneCards custom track
Cytogenetic band:
Genomic Location for HAVCR1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for HAVCR1 Gene

Proteins for HAVCR1 Gene

  • Protein details for HAVCR1 Gene (UniProtKB/Swiss-Prot)

    Protein Symbol:
    Q96D42-HAVR1_HUMAN
    Recommended name:
    Hepatitis A virus cellular receptor 1
    Protein Accession:
    Q96D42
    Secondary Accessions:
    • O43656

    Protein attributes for HAVCR1 Gene

    Size:
    359 amino acids
    Molecular mass:
    38720 Da
    Quaternary structure:
    No Data Available
    Miscellaneous:
    • The extracellular part of the protein can be cleaved and detected in urine and is in correlation with the expression in the kidney

neXtProt entry for HAVCR1 Gene

Proteomics data for HAVCR1 Gene at MOPED

Post-translational modifications for HAVCR1 Gene

  • Glycosylation at Asn65, Asn258, Asn272, and Asn286
  • Modification sites at PhosphoSitePlus

Other Protein References for HAVCR1 Gene

Antibody Products

  • R&D Systems Antibodies for HAVCR1 (TIM-1/KIM-1/HAVCR)

No data available for DME Specific Peptides for HAVCR1 Gene

Domains for HAVCR1 Gene

Gene Families for HAVCR1 Gene

HGNC:
  • VSET :Immunoglobulin superfamily / V-set domain containing

Protein Domains for HAVCR1 Gene

Graphical View of Domain Structure for InterPro Entry

Q96D42

UniProtKB/Swiss-Prot:

HAVR1_HUMAN :
  • Q96D42
Domain:
  • Contains 1 Ig-like V-type (immunoglobulin-like) domain.
Family:
  • Belongs to the immunoglobulin superfamily. TIM family.
genes like me logo Genes that share domains with HAVCR1: view

Function for HAVCR1 Gene

Molecular function for HAVCR1 Gene

UniProtKB/Swiss-Prot Function: May play a role in T-helper cell development and the regulation of asthma and allergic diseases. Receptor for TIMD4 (By similarity). In case of human hepatitis A virus (HHAV) infection, functions as a cell-surface receptor for the virus. May play a role in kidney injury and repair.
UniProtKB/Swiss-Prot Induction: Up-regulated in the kidney in renal diseases (at protein level).

Gene Ontology (GO) - Molecular Function for HAVCR1 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0001618 virus receptor activity IDA 21536871
GO:0005515 protein binding --
genes like me logo Genes that share ontologies with HAVCR1: view
genes like me logo Genes that share phenotypes with HAVCR1: view

Animal Models for HAVCR1 Gene

MGI Knock Outs for HAVCR1:

Animal Model Products

CRISPR Products

miRNA for HAVCR1 Gene

miRTarBase miRNAs that target HAVCR1

miRNA Products

Inhibitory RNA Products

  • Predesigned siRNA for gene silencing in human,mouse,rat for HAVCR1

In Situ Assay Products

Flow Cytometry Products

No data available for Enzyme Numbers (IUBMB) , Transcription Factor Targeting and HOMER Transcription for HAVCR1 Gene

Localization for HAVCR1 Gene

Subcellular locations from UniProtKB/Swiss-Prot for HAVCR1 Gene

Membrane; Single-pass type I membrane protein.

Subcellular locations from

COMPARTMENTS
Jensen Localization Image for HAVCR1 Gene COMPARTMENTS Subcellular localization image for HAVCR1 gene
Compartment Confidence
plasma membrane 3
cytoskeleton 2
extracellular 2
endoplasmic reticulum 1
lysosome 1
peroxisome 1

Gene Ontology (GO) - Cellular Components for HAVCR1 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0016021 integral component of membrane IEA --
GO:0031514 motile cilium IDA 21536871
genes like me logo Genes that share ontologies with HAVCR1: view

Pathways for HAVCR1 Gene

SuperPathways for HAVCR1 Gene

No Data Available

PCR Array Products

  • Pathway & Disease-focused RT² Profiler PCR Arrays

Interacting Proteins for HAVCR1 Gene

STRING Interaction Network Preview (showing 2 interactants - click image to see details)
http://string-db.org/version_10/api/image/networkList?limit=0&targetmode=proteins&caller_identity=gene_cards&network_flavor=evidence&identifiers=9606.ENSP00000344844%0d%0a9606.ENSP00000347117%0d%0a9606.ENSP00000357292%0d%0a
Selected Interacting proteins: Q96D42-HAVR1_HUMAN ENSP00000344844 for HAVCR1 Gene via MINT STRING I2D

Gene Ontology (GO) - Biological Process for HAVCR1 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0009615 response to virus --
GO:0016032 viral process --
GO:0046718 viral entry into host cell IEA --
genes like me logo Genes that share ontologies with HAVCR1: view

No data available for Pathways by source for HAVCR1 Gene

Compounds for HAVCR1 Gene

(1) Novoseek inferred chemical compound relationships for HAVCR1 Gene

Compound -log(P) Hits PubMed IDs
tyrosine 0 1
genes like me logo Genes that share compounds with HAVCR1: view

Transcripts for HAVCR1 Gene

Unigene Clusters for HAVCR1 Gene

Hepatitis A virus cellular receptor 1:
Representative Sequences:

CRISPR Products

miRNA Products

Inhibitory RNA Products

  • Predesigned siRNA for gene silencing in human,mouse,rat for HAVCR1

Primer Products

  • OriGene qSTAR qPCR primer pairs in human,mouse,rat for HAVCR1

Flow Cytometry Products

Alternative Splicing Database (ASD) splice patterns (SP) for HAVCR1 Gene

ExUns: 1 ^ 2 ^ 3a · 3b · 3c ^ 4a · 4b ^ 5a · 5b ^ 6 ^ 7 ^ 8a · 8b ^ 9 ^ 10
SP1:
SP2: - -
SP3: - -
SP4: -

Relevant External Links for HAVCR1 Gene

GeneLoc Exon Structure for
HAVCR1
ECgene alternative splicing isoforms for
HAVCR1

Expression for HAVCR1 Gene

mRNA expression in normal human tissues for HAVCR1 Gene

mRNA expression in embryonic tissues and stem cells from LifeMap Discovery

mRNA differential expression in normal tissues according to GTEx for HAVCR1 Gene

This gene is overexpressed in Kidney - Cortex (21.3).

Integrated Proteomics: protein expression from ProteomicsDB, PaxDb, and MOPED for HAVCR1 Gene

SOURCE GeneReport for Unigene cluster for HAVCR1 Gene Hs.129711

mRNA Expression by UniProt/SwissProt for HAVCR1 Gene

Q96D42-HAVR1_HUMAN
Tissue specificity: Widely expressed, with highest levels in kidney and testis. Expressed by activated CD4+ T-cells during the development of helper T-cells responses.
genes like me logo Genes that share expressions with HAVCR1: view

In Situ Assay Products

Orthologs for HAVCR1 Gene

This gene was present in the common ancestor of chordates.

Orthologs for HAVCR1 Gene

Organism Taxonomy Gene Similarity Type Details
chimpanzee
(Pan troglodytes)
Mammalia HAVCR1 36
  • 67 (a)
OneToOne
cow
(Bos Taurus)
Mammalia -- 36
  • 40 (a)
OneToMany
MGC137099 36
  • 48 (a)
OneToMany
dog
(Canis familiaris)
Mammalia HAVCR1 35
  • 72.93 (n)
  • 60.26 (a)
HAVCR1 36
  • 45 (a)
OneToOne
mouse
(Mus musculus)
Mammalia BC053393 36
  • 33 (a)
OneToMany
Gm12169 36
  • 30 (a)
OneToMany
Havcr1 16
Havcr1 36
  • 38 (a)
OneToMany
Timd2 36
  • 31 (a)
OneToMany
oppossum
(Monodelphis domestica)
Mammalia HAVCR1 36
  • 26 (a)
OneToOne
chicken
(Gallus gallus)
Aves HAVCR1 35
  • 54.72 (n)
  • 49.06 (a)
HAVCR1 36
  • 42 (a)
OneToMany
lizard
(Anolis carolinensis)
Reptilia -- 36
  • 2 (a)
ManyToMany
zebrafish
(Danio rerio)
Actinopterygii timd4 36
  • 19 (a)
OneToMany
Species with no ortholog for HAVCR1:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • fruit fly (Drosophila melanogaster)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • platypus (Ornithorhynchus anatinus)
  • rainbow trout (Oncorhynchus mykiss)
  • rat (Rattus norvegicus)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea squirt (Ciona intestinalis)
  • sea squirt (Ciona savignyi)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • tropical clawed frog (Silurana tropicalis)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)

Evolution for HAVCR1 Gene

ENSEMBL:
Gene Tree for HAVCR1 (if available)
TreeFam:
Gene Tree for HAVCR1 (if available)

Paralogs for HAVCR1 Gene

Paralogs for HAVCR1 Gene

Selected SIMAP similar genes for HAVCR1 Gene using alignment to 7 proteins:

Pseudogenes.org Pseudogenes for HAVCR1 Gene

genes like me logo Genes that share paralogs with HAVCR1: view

Variants for HAVCR1 Gene

Polymorphic Variants from UniProtKB/Swiss-Prot for HAVCR1 Gene

Q96D42-HAVR1_HUMAN
Infection by hepatitis A virus (HAV) protects individuals from atopy if they carry insertion of the variants Met-Thr-Thr-Val-Pro-157 and Met-Thr-Thr-Thr-Val-Pro-157. Modernisation has led to a reduction in HAV seroprevalence and thus, may be, to an increase of expression of atopy, such as asthma, allergic rhinitis and atopic dermatitis. Allelic variation does not affect HAV-infection rates in Caucasians, Asians and African Americans

Sequence variations from dbSNP and Humsavar for HAVCR1 Gene

SNP ID Clin Chr 05 pos Sequence Context AA Info Type MAF
rs870581 -- 157,055,658(+) GTCAG(A/G)AGTTC intron-variant
rs905212 -- 157,030,561(+) gacag(A/G)agaat intron-variant
rs953568 -- 157,050,621(-) GAGAT(A/T)TGGGA intron-variant
rs953569 -- 157,050,389(-) ACTCC(A/C)GGGAA intron-variant
rs1039438 -- 157,049,759(-) CTTAC(C/T)TTTAG intron-variant

Structural Variations from Database of Genomic Variants (DGV) for HAVCR1 Gene

Variant ID Type Subtype PubMed ID
esv2730954 CNV Deletion 23290073

Relevant External Links for HAVCR1 Gene

HapMap Linkage Disequilibrium report
HAVCR1
Human Gene Mutation Database (HGMD)
HAVCR1

Disorders for HAVCR1 Gene

(1) OMIM Diseases for HAVCR1 Gene (606518)

(9) Novoseek inferred disease relationships for HAVCR1 Gene

Disease -log(P) Hits PubMed IDs
hepatitis 59.5 14
asthma allergic 51.4 5
atopy 47.6 4
asthma 46.9 21
autoimmunity 46.1 3

Relevant External Links for HAVCR1

Genetic Association Database (GAD)
HAVCR1
Human Genome Epidemiology (HuGE) Navigator
HAVCR1
genes like me logo Genes that share disorders with HAVCR1: view

No data available for UniProtKB/Swiss-Prot for HAVCR1 Gene

Publications for HAVCR1 Gene

  1. The human homolog of HAVcr-1 codes for a hepatitis A virus cellular receptor. (PMID: 9658108) Feigelstock D. … Kaplan G.G. (J. Virol. 1998) 2 3 4 23
  2. Insertion/deletion coding polymorphisms in hHAVcr-1 are not associated with atopic asthma in the Japanese population. (PMID: 12618867) Noguchi E. … Arinami T. (Genes Immun. 2003) 3 23 48
  3. Genetic variants of the T-cell immunoglobulin mucin 1 but not the T-cell immunoglobulin mucin 3 gene are associated with asthma in an African American population. (PMID: 15867855) Gao P.S. … Huang S.K. (J. Allergy Clin. Immunol. 2005) 3 23 48
  4. Genetic association studies between the T cell immunoglobulin mucin (TIM) gene locus and childhood atopic dermatitis. (PMID: 16940744) Page N.S. … Stewart G.J. (Int. Arch. Allergy Immunol. 2006) 3 23 48
  5. Absence of association between two insertion/deletion coding genetic polymorphisms of TIM-1 gene and asthma in Chinese Han population. (PMID: 17117951) Li J.S. … Gong Y.Q. (Int. J. Immunogenet. 2006) 3 23 48

Products for HAVCR1 Gene

Sources for HAVCR1 Gene

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