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Aliases & Descriptions for HARS
(According to
1HGNC,
2Entrez Gene,
3UniProtKB/Swiss-Prot,
4UniProtKB/TrEMBL, 5OMIM, 6GeneLoc
, and/or 7Ensembl,
8miRBase) About This Section
|
| Aliases |
|---|
| EC 6.1.1.21 3 | | FLJ20491 2 | | HRS 2, 3 | | HisRS 2, 3 |
| | | Descriptions |
|---|
| Histidine--tRNA ligase 3 | | histidine tRNA ligase 1, cytoplasmic 2 | | histidine translase 2 | | histidine-tRNA ligase 2 | | histidyl-tRNA synthetase 2 |
|
| | Search outside databases for aliases for HARS genePrevious GC identifers: GC05M139869 GC05M140636 GC05M140036 GC05M140081 |
Summaries for HARS(According to Entrez Gene,
Wikipedia's
Gene Wiki,
UniProtKB/Swiss-Prot,
and/or
UniProtKB/TrEMBL)
About This Section
| EntrezGene summary for HARS: Aminoacyl-tRNA synthetases are a class of enzymes that charge tRNAs with their cognate amino acids. The protein encoded by this gene is a cytoplasmic enzyme which belongs to the class II family of aminoacyl-tRNA synthetases. The enzyme is responsible for the synthesis of histidyl-transfer RNA, which is essential for the incorporation of histidine into proteins. The gene is located in a head-to-head orientation with HARSL on chromosome five, where the homologous genes share a bidirectional promoter. The gene product is a frequent target of autoantibodies in the human autoimmune disease polymyositis/dermatomyositis. [provided by RefSeq] Gene Wiki entry for HARS |
Genomic Location for HARS
(According to
GeneLoc and/or
HGNC, and/or
Entrez Gene (NCBI build 36),
and/or miRBase,
Genomic Views according to
UCSC and
Ensembl,
Transcription factor binding sites according to
SABiosciences) About This Section
| Genomic View: UCSC Golden Path with GeneCards custom track
Transcription factor binding sites upstream to the HARS gene 
Entrez Gene cytogenetic band: 5q31.3 Ensembl cytogenetic band: 5q31.3 HGNC cytogenetic band: 5q31.3HARS Gene in genomic location: bands according to Ensembl, locations according to
(and/or Entrez Gene and/or Ensembl if different)
 GeneLoc gene densities for chromosome 5 GeneLoc Exon Structure GeneLoc location for GC05M140034:
(about GC identifiers)
Start:
|
140,033,674 bp from pter |
End:
|
140,051,155 bp from pter |
Size:
|
17,482 bases |
Orientation:
|
minus strand |
RefSeq DNA sequence:- NC_000005.8 NT_029289.10
| Proteins for HARS
(According to
1UniProtKB,
and/or Ensembl,
Phosphorylation sites according to 2Phosphosite,
RefSeq according to NCBI,
PDB rendering according to OCA and/or Proteopedia,
Recombinant Proteins
from Invitrogen,
Millipore,
Sigma-Aldrich,
R&D Systems,
Enzo Life Sciences,
Abnova,
OriGene and/or,
Abcam,
Biochemical Assays by
Invitrogen,
Millipore,
R&D Systems,
Cell Signaling Technology, and/or
Enzo Life Sciences,
Ontologies according to Gene
Ontology Consortium 01 Apr 2009 and
Entrez Gene,
Antibodies by Invitrogen,
Millipore,
Sigma-Aldrich,
R&D Systems,
Cell Signaling Technology,
Abcam,
Abnova, and/or
Novus Biologicals)
About This Section
| UniProtKB/Swiss-Prot: SYHC_HUMAN, P12081 (See
protein sequence)Recommended Name: Histidyl-tRNA synthetase, cytoplasmic Size: 509 amino acids; 57411 Da
Subcellular location: Cytoplasm
Sequence caution: Sequence=CAA28956.1; Type=Frameshift; Positions=Several;
PDB structures from and Proteopedia :1X59 (3D)
 Post-translational modifications:
View phosphorylation sites using PhosphoSite2
REFSEQ proteins: NP_002100.2
ENSEMBL proteins: ENSP00000304668
Human Recombinant Proteins Browse Origene for full length recombinant human proteins expressed in human HEK293 cells 
1 Gene Ontology (GO) cellular component term (links to tree view): | GO ID | Qualified GO term | Evidence | PubMed IDs |
|---|
| GO:0005737 | cytoplasm |
NAS | -- | About this table
Antibodies for HARS: Assays for HARS: | Protein
Domains/ Families for HARS(According to InterPro, ProtoNet,
UniProtKB, and/or BLOCKS,
Sets of similar genes according to GeneDecks)
About This Section
| - Graphical View of Domain Structure for InterPro Entry P12081
ProtoNet protein and cluster: P12081 2 Blocks protein families: IPB000738 WHEP-TRS domain IPB004154 Anticodon binding domain
UniProtKB/Swiss-Prot: SYHC_HUMAN, P12081Similarity: Belongs to the class-II aminoacyl-tRNA synthetase familySimilarity: Contains 1 WHEP-TRS domain | Gene Function for HARS
(According to MGI Jun 06 2009, UniProtKB,
IUBMB,and/or Genatlas,
shRNA from
OriGene,
Sigma-Aldrich, RNAi from
Sigma-Aldrich,
RNAi Products,
Clones, and
Q-PCR Products
from Invitrogen,
Millipore,
OriGene, and/or
Abnova,
siRNAs from
Applied Biosystems,
SYBR primers from OriGene,
Cell-based Assays from Millipore,
Ontologies according to Gene Ontology Consortium 01 Apr 2009 via
Entrez Gene.)
About This Section
|               OriGene 29mer shRNA kit in GFP-retroviral vector: NM_002109
Applied Biosystems Silencer® siRNAs for HARS
Sigma-Aldrich siRNA for HARS  Sigma-Aldrich shRNA for HARS  Explore Sigma-Aldrich super-pooled esiRNAs 
              OriGene GFP tagged cDNA clone in CMV expression vector: NM_002109                                  Myc/DDK tagged cDNA clone in CMV expression vector: NM_002109                                  untagged cDNA clone in CMV expression vector: NM_002109 
Primers: Browse
Quantitative PCR Central at Invitrogen for Q-PCR LUX™ Primers               OriGene genome-wide validated SYBR primer pairs: NM_002109
UniProtKB/Swiss-Prot: SYHC_HUMAN, P12081Catalytic activity: ATP + L-histidine + tRNA(His) = AMP + diphosphate + L-histidyl-tRNA(His)Enzyme Number (IUBMB): EC 6.1.1.21 Genatlas biochemistry entry for HARS:histidyl-tRNA synthetase,target autoantibodies in the immune disease polymyositis/dermatomyositis4 Gene Ontology (GO) molecular function terms (links to tree view): About this table | Pathways & Interactions for HARS
(Pathways according to Invitrogen
(maps by GeneGo),
Millipore,
Cell Signaling Technology,
Sigma-Aldrich,
KEGG
and/or UniProtKB,
Sets of similar genes according to GeneDecks,
Proteins Network according to
SABiosciences,
Interactions according to 1UniProtKB,
2MINT, and/or
3STRING,
with links to IntAct and
Ensembl,
Ontologies according to Gene Ontology Consortium 01 Apr 2009 via
Entrez Gene.)
About This Section
| 2 Sigma-Aldrich "Your Favorite Gene" Pathways for HARS (Your Favorite Gene powered by Ingenuity) 
Gene Network CentralTM Interacting Genes and Proteins Network for HARS 
5/202 Interacting proteins for HARS (P120812 ENSP000003046683) via UniProtKB, MINT, and/or STRING (see all 202
)About this table
1 Gene Ontology (GO) biological process term (links to tree view): | GO ID | Qualified GO term | Evidence | PubMed IDs |
|---|
| GO:0006427 | histidyl-tRNA aminoacylation |
IEA | -- | About this table
|
Drugs & Compounds for HARS(Chemical Compounds according to UniProtKB, Enzo Life Sciences,
Sigma-Aldrich, Tocris Bioscience, and/or
Novoseek and Drugs according to
Enzo Life Sciences and/or
PharmGKB)
About This Section
|
Browse Tocris compounds for HARS
|
Transcripts for HARS(GenBank/EMBL/DDBJ Accessions according to
Unigene
(Build 219 Homo sapiens; Jun 2 2009) or GenBank, RefSeq according to Entrez Gene,
DOTS (version 10), and/or
AceView,
non coding RNAs according to
RNAdb,
ESTs according to GeneTide,
exon structure from GeneLoc,
alternative splicing isoforms according to ASD and/or
ECgene,
RNAi Products from Invitrogen,
Millipore, and/or
Abnova,
siRNAs from Applied Biosystems,
Sigma-Aldrich,
shRNA from
Sigma-Aldrich,
OriGene,
Tagged/untagged cDNA clones from
OriGene, Expression Assays from Applied Biosystems) About This Section
|               OriGene 29mer shRNA kit in GFP-retroviral vector: NM_002109
Sigma-Aldrich siRNA for HARS  Sigma-Aldrich shRNA for HARS  Explore Sigma-Aldrich super-pooled esiRNAs 
Applied Biosystems Silencer® siRNAs: NM_002109 REFSEQ mRNAs for HARS gene: NM_002109.3
Applied Biosystems TaqMan ® Gene Expression Assays: NM_002109               OriGene GFP tagged cDNA clone in CMV expression vector: NM_002109                                  Myc/DDK tagged cDNA clone in CMV expression vector: NM_002109                                  untagged cDNA clone in CMV expression vector: NM_002109  Additional cDNA sequence: AK000498.1 AK094406.1 AK225776.1 AK293154.1 AK293531.1 AK295219.1 AK302295.1 AK303778.1 AK307669.1 AY995220.1 BC011807.2 BC080514.1 CR595110.1 CR596101.1 CR607453.1 CR608398.1 CR609422.1 23 DOTS entries: DT.452906 DT.97864368 DT.100813105 DT.95171401 DT.100783763 DT.91764618 DT.435033 DT.101966816 DT.100030876 DT.120887671 DT.120887591 DT.120887651 DT.120887685 DT.100030880 DT.120887619 DT.120887647 DT.120887550 DT.91719427 DT.95171385 DT.95171393 DT.100814557 DT.115301 DT.95258995 24/386 AceView cDNA sequences (see all 386
):CR609422 CA503336 BG177786 CR608398 BM756043 BM707376 CF132667 BI259343 BX402935 BM704203 AA586865 AU122594 AI685554 CD364439 CB215608 BF477780 BQ064046 BM825920 BU687381 Z40900 BQ063564 BM843887 CF134797 BC080514
highest scoring ESTs for HARS:AA323719 AA334715 AA341345 AA374007 AA375856 AK000498 AU120966 AU122521 AU122594 AU126371 Unigene Cluster for HARS: Histidyl-tRNA synthetase Hs.528050 [show with all ESTs]Unigene Representative Sequence: AK000498
GeneLoc Exon Structure
5/12 Alternative Splicing Database (ASD) splice patterns (SP) for HARS (see all 12
)
| ExUns: | 1a | · | 1b | · | 1c | · | 1d | · | 1e | · | 1f | ^ | 2 | ^ | 3a | · | 3b | ^ | 4a | · | 4b | ^ | 5a | · | 5b | · | 5c | · | 5d | ^ | 6a | · | 6b | · | 6c | · | 6d | ^ | 7 | ^ | 8a | · | 8b | · | 8c | ^ | 9 | ^ | 10 | ^ | 11a | · | |
| SP1: | |   | |   | |   | |   | |   | |   | |   | |   | - |   | |   | - |   | |   | |   | - |   | - |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | - |   | |
| SP2: | |   | |   | |   | |   | |   | |   | |   | |   | - |   | - |   | - |   | - |   | - |   | - |   | - |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |
| SP3: | |   | |   | |   | |   | |   | |   | |   | |   | - |   | |   | - |   | |   | - |   | - |   | - |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |
| SP4: | |   | |   | |   | |   | |   | |   | |   | - |   | - |   | |   | - |   | |   | |   | - |   | - |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |
| SP5: | |   | |   | |   | |   | |   | |   | |   | |   | - |   | - |   | - |   | - |   | - |   | - |   | - |   | - |   | - |   | - |   | - |   | |   | |   | |   | |   | |   | |   | |   |
| ExUns: | 11b | · | 11c | ^ | 12 | ^ | 13a | · | 13b | |
| SP1: | - |   | |   | |   | |   | |   | |
| SP2: | |   | |   | |   | |   | |   | |
| SP3: | |   | |   | |   | |   | |   | |
| SP4: | |   | |   | |   | |   | |   | |
| SP5: | |   | |   | |   | |   | |   |
About this scheme
ECgene alternative splicing isoforms for HARS
1 Ensembl transcript including schematic representation: ENST00000307633
|
Expression for HARS
(Experimental results according to
1GeneNote
and GNF BioGPS,
probe sets-to-genes annotations according to
2GeneAnnot ,
3GeneTide ,
Sets of similar genes according to GeneDecks,
Electronic Northern calculations according to data from
UniGene (Build 219 Homo sapiens),
SAGE tags according to
CGAP,
plus additional links to
SOURCE, and/or
GNF
BioGPS, and/or
EXPOLDB, and/or
UniProtKB,
Expression Assays from
Applied Biosystems
)
About This Section
| HARS expression in normal and diseased human tissues
Applied Biosystems TaqMan ® Gene Expression Assays for HARS
1 / 2 / 3 5 probe-sets matching HARS gene Data from
(Publications) and GNF BioGPS About these images About these images
CGAP SAGE TAG: TGTGGGGCTC
SOURCE GeneReport for Unigene cluster: Hs.528050
Expression variation in blood from EXPOLDB for HARS UniProtKB/Swiss-Prot: SYHC_HUMAN, P12081Tissue specificity: Brain, heart, liver and kidney |
Orthologs for HARS
(Orthologs according to
1,2HomoloGene (2older version, for species not in 1newer version),
3euGenes,
4SGD
and/or
5MGI Jun 06 2009,
with possible further links to
Flybase
and/or
WormBase,
Gene Trees according to Ensembl)
About This Section
|
Orthologs for HARS gene from 5/23 species (see all 23
)
About this table Species with no ortholog for HARS
ENSEMBL Gene Tree for HARS | Paralogs for HARS(Paralogs according to 1HomoloGene and 2Ensembl, Pseudogenes according to 3Pseudogene.org) About This Section
| Paralogs for HARS gene
- ENSG000001128552
|
SNPs/Variants for HARS(According to the
1NCBI SNP Database,
2Ensembl,
3PupaSUITE, and
UniProtKB,
Linkage Disequilibrium by HapMap,
Genotyping Reagents from
Applied Biosystems)
About This Section
|
HapMap Linkage Disequilibrium images for HARS (up to first 250kb)
|
Disorders & Mutations for HARS
(in which this Gene is Involved, According to
OMIM, UniProtKB,
Novoseek, PharmGKB,
Genatlas, GeneTests,
Blood group antigen gene mutations by BGMUT,
HGMD, GAD,
HuGE Navigator,
BCGD,
and/or TGDB.)
About This Section
|
OMIM: 142810
2 Novoseek disease relationships for HARS gene
About this table
Human Gene Mutation Database: HARS
|
Medical News for HARS(Possibly Related Articles in
Doctor's Guide)
About This Section
| |
Publications for HARS (in
PubMed.
Associations of this gene to articles via
1Novoseek,
2HGNC,
3Entrez Gene,
4UniProtKB/Swiss-Prot,
5UniProtKB/TrEMBL,
6GAD, and/or
7PharmGKB)
About This Section
| 10/28 PubMed articles for HARS gene (see all 28
):- A novel gene oriented in a head-to-head configuration with the human histidyl-tRNA synthetase (HRS) gene encodes an mRNA that predicts a polypeptide homologous to HRS. (PubMed id 7755634)1, 3, 4 O'Hanlon T.P.... Miller F.W. (1995)
- Transcriptional analyses of the gene region that encodes human histidyl-tRNA synthetase: identification of a novel bidirectional regulatory element. (PubMed id 8406012)1, 3, 4 Tsui H.W.... Tsui F.W.L. (1993)
- Human histidyl-tRNA synthetase: recognition of amino acid signature regions in class 2a aminoacyl-tRNA synthetases. (PubMed id 1549469)1, 3, 4 Raben N.... Plotz P. (1992)
- The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC). (PubMed id 15489334)3, 4 Gerhard D.S....Malek J. (2004)
- Isolation, structure and expression of mammalian genes for histidyl- tRNA synthetase. (PubMed id 3554142)3, 4 Tsui F.W.L. and Siminovitch L. (1987)
- Novel conformation of histidyl-transfer RNA synthetase in the lung: the target tissue in Jo-1 autoantibody-associated myositis. (PubMed id 17665459)1, 3 Levine S.M....Casciola-Rosen L.A. (2007)
- Cellular localization of the target structures recognized by the anti-Jo-1 antibody: immunofluorescence studies on cultured human myoblasts. (PubMed id 2023220)1, 3 Shi M.H....Rubin L.A. (1991)
- Clinical significance of anti-histidyl-tRNA synthetase (Jo1) autoantibodies. (PubMed id 17785330)3 Gomard-Mennesson E....Rousset H. (2007)
- Complete sequencing and characterization of 21,243 full-length human cDNAs. (PubMed id 14702039)3 Ota T....Sugano S. (2004)
- TSG101 interaction with HRS mediates endosomal trafficking and receptor down-regulation. (PubMed id 12802020)3 Lu Q....Cohen S.N. (2003)
|
Search for HARS
(in PubMed,
OMIM, and NCBI Bookshelf) About This Section
|
|
Genome Databases showing HARS
(According to
Entrez Gene,
HGNC,
AceView,
euGenes,
Ensembl,
miRBase,
ECgene,
and/or
H-InvDB)
About This Section
|
| Other Databases showing HARS
(According to HUGE)
About This Section
| -- |
Specialized Databases showing HARS(According to ATLAS, HORDE, IMGT, MTDB, LEIDEN, UniProtKB/Swiss-Prot, and/or UniProtKB/TrEMBL, Wikipedia and/or GeneReviews via UniProtKB/Swiss-Prot) About This Section
|
| About This Section
| --
| Services for HARS(Reagents available from Applied Biosystems, Antibodies and assays by Cell
Signaling Technology, Abcam, Novus Biologicals, Sigma-Aldrich, R&D Systems, Millipore, Abnova, and/or Invitrogen, Clones available from OriGene,and/or Invitrogen, Drugs and/or compounds by Sigma-Aldrich, Enzo Life Sciences, and/or Tocris Bioscience) About This Section
| 
 Products for HARS:

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Incremental update: 13 Oct 2009
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