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HARS Gene

protein-coding   GIFtS: 66

GC05M140034
histidyl-tRNA synthetase
Symbol approved by the HUGO Gene Nomenclature Committee (HGNC) database
Services    
(According to 1HGNC, 2Entrez Gene,
3UniProtKB/Swiss-Prot, 4UniProtKB/TrEMBL, 5OMIM, 6GeneLoc , and/or 7Ensembl, 8miRBase)
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Aliases
EC 6.1.1.21 3
FLJ20491 2
HRS 2, 3
HisRS 2, 3
Descriptions
Histidine--tRNA ligase 3
histidine tRNA ligase 1, cytoplasmic 2
histidine translase 2
histidine-tRNA ligase 2
histidyl-tRNA synthetase 2
External Ids
HGNC: 48161
Entrez Gene: 30352
UniProtKB: P120813
Ensembl: ENSG000001704457
Search outside databases for aliases for HARS gene

Previous GC identifers: GC05M139869 GC05M140636 GC05M140036 GC05M140081

(According to Entrez Gene, Wikipedia's Gene Wiki,
UniProtKB/Swiss-Prot, and/or UniProtKB/TrEMBL)
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EntrezGene summary for HARS:
Aminoacyl-tRNA synthetases are a class of enzymes that charge tRNAs with their cognate amino acids.
The protein encoded by this gene is a cytoplasmic enzyme which belongs to the class II family of
aminoacyl-tRNA synthetases. The enzyme is responsible for the synthesis of histidyl-transfer RNA,
which is essential for the incorporation of histidine into proteins. The gene is located in a
head-to-head orientation with HARSL on chromosome five, where the homologous genes share a
bidirectional promoter. The gene product is a frequent target of autoantibodies in the human
autoimmune disease polymyositis/dermatomyositis. [provided by RefSeq]

Gene Wiki entry for HARS
(According to GeneLoc and/or HGNC, and/or
Entrez Gene (NCBI build 36),
and/or miRBase,
Genomic Views according to UCSC and Ensembl, Transcription factor binding sites according to SABiosciences)
About This Section

Genomic View:
UCSC Golden Path with GeneCards custom track

 Transcription factor binding sites upstream to the HARS gene  

Entrez Gene cytogenetic band: 5q31.3   Ensembl cytogenetic band:  5q31.3   HGNC cytogenetic band: 5q31.3

HARS Gene in genomic location: bands according to Ensembl, locations according to (and/or Entrez Gene and/or Ensembl if different)

GeneLoc gene densities for chromosome 5         GeneLoc Exon Structure

GeneLoc location for GC05M140034:     (about GC identifiers)

Start:
140,033,674 bp from pter
End:
140,051,155 bp from pter
Size:
17,482 bases
Orientation:
minus strand
RefSeq DNA sequence:
NC_000005.8  NT_029289.10  
(According to 1UniProtKB, and/or Ensembl, Phosphorylation sites according to 2Phosphosite, RefSeq according to NCBI, PDB rendering according to OCA and/or Proteopedia, Recombinant Proteins from Invitrogen, Millipore, Sigma-Aldrich, R&D Systems, Enzo Life Sciences, Abnova, OriGene and/or, Abcam,
Biochemical Assays by Invitrogen, Millipore, R&D Systems, Cell Signaling Technology, and/or Enzo Life Sciences, Ontologies according to Gene Ontology Consortium 01 Apr 2009 and Entrez Gene, Antibodies by Invitrogen, Millipore, Sigma-Aldrich, R&D Systems, Cell Signaling Technology, Abcam, Abnova, and/or Novus Biologicals)
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UniProtKB/Swiss-Prot: SYHC_HUMAN, P12081 (See protein sequence)
Recommended Name: Histidyl-tRNA synthetase, cytoplasmic  
Size: 509 amino acids; 57411 Da
Subcellular location: Cytoplasm
Sequence caution: Sequence=CAA28956.1; Type=Frameshift; Positions=Several;
PDB structures from and Proteopedia :
1X59 (3D)    

Post-translational modifications:

  • View phosphorylation sites using PhosphoSite2


  • REFSEQ proteins: NP_002100.2  

    ENSEMBL proteins: 
    ENSP00000304668 


    Human Recombinant Proteins 
    Browse Drug Discovery Central at Invitrogen for human recombinant proteins
    Browse Purified and Recombinant Proteins at Millipore
    Sigma-Aldrich Proteins for HARS  
    Browse R&D Systems for human recombinant proteins
    Browse recombinant and purified proteins available from Enzo Life Sciences
    Recombinant Proteins from Abcam (HARS)
    Human Recombinant Proteins from Abnova (HARS)
                    Browse Origene for full length recombinant human proteins expressed in human HEK293 cells 

    1 Gene Ontology (GO) cellular component term (links to tree view):

    GO IDQualified GO termEvidencePubMed IDs
    GO:0005737 cytoplasm NAS--
    About this table

    Antibodies for HARS: 
    Browse Antibodies Central at Invitrogen
    Browse Millipore's Extensive Line of Mono- and Polyclonal Antibodies
    Sigma-Aldrich Antibodies for HARS
    Browse R&D Systems for Antibodies
    Antibodies from Abcam (HARS), each with their AbpromiseSM
    Monoclonal and Polyclonal Antibodies from Abnova (HARS)
    Novus Biologicals Antibodies for HARS

    Assays for HARS: 
    Browse Invitrogen for biochemical assays
    Browse Kits and Assays available from Millipore
    Browse R&D Systems for biochemical assays
    Browse biochemical assays available from Enzo Life Sciences

    (According to InterPro, ProtoNet, UniProtKB, and/or BLOCKS, Sets of similar genes according to GeneDecks)
    About This Section

    5/6 InterPro domains/families (see all 6 ):
     IPR002314 aa-tRNA-synt_IIb_cons-reg
     IPR000738 WHEP-TRS
     IPR006195 aa-tRNA-synth_II_cons-reg
     IPR015807 His-tRNA-synth_IIa_sub
     IPR004154 Anticodon_bd


       GeneDecks  HARS for the domains selected above  
    About GeneDecksing

    Graphical View of Domain Structure for InterPro Entry P12081

    ProtoNet protein and cluster: P12081

    2 Blocks protein families:
    IPB000738 WHEP-TRS domain
    IPB004154 Anticodon binding domain


    UniProtKB/Swiss-Prot: SYHC_HUMAN, P12081
    Similarity: Belongs to the class-II aminoacyl-tRNA synthetase family
    Similarity: Contains 1 WHEP-TRS domain

    (According to MGI Jun 06 2009, UniProtKB, IUBMB,and/or Genatlas,
    shRNA from OriGene, Sigma-Aldrich, RNAi from Sigma-Aldrich,
    RNAi Products, Clones, and Q-PCR Products from Invitrogen, Millipore, OriGene, and/or Abnova, siRNAs from Applied Biosystems, SYBR primers from OriGene, Cell-based Assays from Millipore, Ontologies according to Gene Ontology Consortium 01 Apr 2009 via Entrez Gene.)
    About This Section

    Inhib.
    RNA:
    Invitrogen RNAi Products for gene knock-down (HARS)
    Browse for Gene Knock-down Tools from Millipore
    Abnova Chimera RNAi Products for Gene knock-down (HARS)
                  OriGene 29mer shRNA kit in GFP-retroviral vector: NM_002109

                  Applied Biosystems Silencer® siRNAs for HARS

                  Sigma-Aldrich siRNA for HARS  
                         Sigma-Aldrich shRNA for HARS  
                         Explore Sigma-Aldrich super-pooled esiRNAs  

    Clones:Invitrogen Clones for HARS
    Browse Clones for the Expression of Recombinant Proteins Available from Millipore
                  OriGene GFP tagged cDNA clone in CMV expression vector: NM_002109
                                     Myc/DDK tagged cDNA clone in CMV expression vector: NM_002109
                                     untagged cDNA clone in CMV expression vector: NM_002109 

    Primers: Browse Quantitative PCR Central at Invitrogen for Q-PCR LUX™ Primers
                  OriGene genome-wide validated SYBR primer pairs: NM_002109

    UniProtKB/Swiss-Prot: SYHC_HUMAN, P12081
    Catalytic activity: ATP + L-histidine + tRNA(His) = AMP + diphosphate + L-histidyl-tRNA(His)
    Enzyme Number (IUBMB): EC 6.1.1.21 

    Genatlas biochemistry entry for HARS:
    histidyl-tRNA synthetase,target autoantibodies in the immune disease polymyositis/dermatomyositis

    4 Gene Ontology (GO) molecular function terms (links to tree view):

    GO IDQualified GO termEvidencePubMed IDs
    GO:0000166 nucleotide binding IEA--
    GO:0004821 histidine-tRNA ligase activity NAS1549469 7755634
    GO:0005524 ATP binding NAS--
    GO:0016874 ligase activity IEA--
    About this table

    (Pathways according to Invitrogen (maps by GeneGo), Millipore, Cell Signaling Technology, Sigma-Aldrich, KEGG and/or UniProtKB,
    Sets of similar genes according to GeneDecks, Proteins Network according to SABiosciences, Interactions according to 1UniProtKB, 2MINT, and/or 3STRING, with links to IntAct and Ensembl, Ontologies according to Gene Ontology Consortium 01 Apr 2009 via Entrez Gene.)
    About This Section


    2 Sigma-Aldrich "Your Favorite Gene" Pathways for  HARS  (Your Favorite Gene powered by Ingenuity) 
     Histidine Metabolism
     Aminoacyl-tRNA Biosynthesis

       GeneDecks  HARS for the pathways selected above  
    About GeneDecksing

    2 Kegg Pathways  (Kegg details for HARS):
     hsa00340 Histidine metabolism
     hsa00970 Aminoacyl-tRNA biosynthesis

       GeneDecks  HARS for the pathways selected above  
    About GeneDecksing
     Gene Network CentralTM Interacting Genes and Proteins Network for  HARS 


    5/202 Interacting proteins for HARS (P120812 ENSP000003046683) via UniProtKB, MINT, and/or STRING (see all 202 )
    InteractantInteraction Details
    GeneCardExternal ID(s)
    RPL5P34P467772, ENSP000003593453MINT-6542674 STRING (score=.765)
    ARHGEF4Q9NR802MINT-6542674
    CUL1Q136162MINT-6542674
    CUL2Q136172MINT-6542674
    CUL3Q136182MINT-6542674
    About this table

    1 Gene Ontology (GO) biological process term (links to tree view):

    GO IDQualified GO termEvidencePubMed IDs
    GO:0006427 histidyl-tRNA aminoacylation IEA--
    About this table
    (Chemical Compounds according to UniProtKB, Enzo Life Sciences, Sigma-Aldrich, Tocris Bioscience, and/or Novoseek and Drugs according to Enzo Life Sciences and/or PharmGKB)
    About This Section

    Browse drugs & compounds from Enzo Life Sciences
    Browse Small Molecules at Sigma-Aldrich

    Browse Tocris compounds for HARS

    (GenBank/EMBL/DDBJ Accessions according to
    Unigene (Build 219 Homo sapiens; Jun 2 2009) or GenBank,
    RefSeq according to Entrez Gene,
    DOTS (version 10), and/or AceView,
    non coding RNAs according to RNAdb,
    ESTs according to GeneTide,
    exon structure from GeneLoc, alternative splicing isoforms according to ASD and/or ECgene,
    RNAi Products from Invitrogen, Millipore, and/or Abnova,
    siRNAs from Applied Biosystems, Sigma-Aldrich,
    shRNA from Sigma-Aldrich, OriGene,
    Tagged/untagged cDNA clones from OriGene,
    Expression Assays from Applied Biosystems)
    About This Section

    Inhib.
    RNA:
    Invitrogen RNAi Products for gene knock-down (HARS)
    Browse for Gene Knock-down Tools from Millipore
    Abnova Chimera RNAi Products for Gene knock-down (HARS)
                  OriGene 29mer shRNA kit in GFP-retroviral vector: NM_002109

                  Sigma-Aldrich siRNA for HARS  
                         Sigma-Aldrich shRNA for HARS  
                         Explore Sigma-Aldrich super-pooled esiRNAs  

    Applied Biosystems Silencer® siRNAs: 

    NM_002109  

    REFSEQ mRNAs for HARS gene: 

    NM_002109.3   

    Applied Biosystems TaqMan ® Gene Expression Assays: 

    NM_002109  

                  OriGene GFP tagged cDNA clone in CMV expression vector: NM_002109
                                     Myc/DDK tagged cDNA clone in CMV expression vector: NM_002109
                                     untagged cDNA clone in CMV expression vector: NM_002109 

    Additional cDNA sequence: 

    AK000498.1 AK094406.1 AK225776.1 AK293154.1 AK293531.1 AK295219.1 AK302295.1 AK303778.1 
    AK307669.1 AY995220.1 BC011807.2 BC080514.1 CR595110.1 CR596101.1 CR607453.1 CR608398.1 
    CR609422.1 

    23 DOTS entries:

    DT.452906  DT.97864368  DT.100813105  DT.95171401  DT.100783763  DT.91764618  DT.435033  DT.101966816 
    DT.100030876  DT.120887671  DT.120887591  DT.120887651  DT.120887685  DT.100030880  DT.120887619  DT.120887647 
    DT.120887550  DT.91719427  DT.95171385  DT.95171393  DT.100814557  DT.115301  DT.95258995 

    24/386 AceView cDNA sequences (see all 386 ):

    CR609422 CA503336 BG177786 CR608398 BM756043 BM707376 CF132667 BI259343 
    BX402935 BM704203 AA586865 AU122594 AI685554 CD364439 CB215608 BF477780 
    BQ064046 BM825920 BU687381 Z40900 BQ063564 BM843887 CF134797 BC080514 

    highest scoring ESTs for HARS:

    AA323719 AA334715 AA341345 AA374007 AA375856 AK000498 AU120966 AU122521 AU122594 AU126371 

    Unigene Cluster for HARS:

    Histidyl-tRNA synthetase
    Hs.528050  [show with all ESTs]
    Unigene Representative Sequence: AK000498


    GeneLoc Exon Structure

    5/12 Alternative Splicing Database (ASD) splice patterns (SP) for HARS (see all 12 )

    ExUns: 1a · 1b · 1c · 1d · 1e · 1f ^ 2 ^ 3a · 3b ^ 4a · 4b ^ 5a · 5b · 5c · 5d ^ 6a · 6b · 6c · 6d ^ 7 ^ 8a · 8b · 8c ^ 9 ^ 10 ^ 11a ·
    SP1:                                                  -           -                 -     -                                                                 -   
    SP2:                                                  -     -     -     -     -     -     -                                                                     
    SP3:                                                  -           -           -     -     -                                                                     
    SP4:                                            -     -           -                 -     -                                                                     
    SP5:                                                  -     -     -     -     -     -     -     -     -     -     -                                             

    ExUns: 11b · 11c ^ 12 ^ 13a · 13b
    SP1:  -                           
    SP2:                              
    SP3:                              
    SP4:                              
    SP5:                              

    About this scheme

    ECgene alternative splicing isoforms for HARS

    1 Ensembl transcript including schematic representation:
    ENST00000307633  
    (Experimental results according to 1GeneNote and GNF BioGPS,
    probe sets-to-genes annotations according to 2GeneAnnot , 3GeneTide , Sets of similar genes according to GeneDecks, Electronic Northern calculations according to data from UniGene (Build 219 Homo sapiens), SAGE tags according to CGAP, plus additional links to SOURCE, and/or GNF BioGPS, and/or EXPOLDB, and/or UniProtKB,
    Expression Assays from Applied Biosystems )
    About This Section

    HARS expression in normal and diseased human tissues

     Applied Biosystems TaqMan ® Gene Expression Assays for HARS

    1 / 2 / 3

    5 probe-sets matching HARS gene


    Affymetrix
    probe-set
    Array  GeneAnnot data GeneNote data GeneTide data
    # genes Sensitivity Specificity Correlation Length Gb_Accession Consensus Uniqueness Score Rank

    72022_r_at2, 3 U95-E 1 1.00 1.00 0.90 0.50 AA904602 0.60 1.00 0.82 1

    74823_f_at2, 3 U95-D 1 1.00 1.00 0.67 1.65 AW022495 0.60 1.00 0.82 1

    34744_at2, 3 U95-A 1 0.50 1.00 0.28 0.91 M96646 0.20 1.00 0.72 1

    202042_at2, 3 U133-A 1 1.00 1.00 -- -- NM_002109 0.60 1.00 0.82 1

    202042_at2 U133Plus2 1 1.00 1.00 -- -- -- -- -- -- --
    About this table
    Data from (Publications) and GNF BioGPS
        About these images
    About these images

    CGAP SAGE TAG: TGTGGGGCTC

    SOURCE GeneReport for Unigene cluster: Hs.528050

    Expression variation in blood from EXPOLDB for HARS

    UniProtKB/Swiss-Prot: SYHC_HUMAN, P12081
    Tissue specificity: Brain, heart, liver and kidney

    (Orthologs according to 1,2HomoloGene (2older version, for species not in 1newer version), 3euGenes, 4SGD and/or 5MGI Jun 06 2009, with possible further links to Flybase and/or WormBase, Gene Trees according to Ensembl)
    About This Section


    Orthologs for HARS gene from 5/23 species (see all 23 )
    Organism Gene Locus Description Human
    Similarity
    NCBI accessions
    dog
    (Canis familiaris)
    HARS1   -- histidyl-tRNA synthetase 90.7(n)
    95.87(a)
    478034  XM_535213.2  XP_535213.2 
    cow
    (Bos taurus)
    HARS1   -- histidyl-tRNA synthetase 90.83(n)
    96.07(a)
    510937  NM_001046066.1  NP_001039531.1 
    rat
    (Rattus norvegicus)
    Hars1   -- histidyl-tRNA synthetase 88.93(n)
    95.06(a)
    307492  NM_001025414.1  NP_001020585.1 
    mouse
    (Mus musculus)
    Hars1, 5 185
    histidyl-tRNA synthetase1, 5 88.15(n)1
    94.5(a)1
    151151  NM_008214.31  NP_032240.21 
     AK0116855  AK0142535  (see all 19)
    chicken
    (Gallus gallus)
    HARS1   -- histidyl-tRNA synthetase 77.15(n)
    83.77(a)
    416132  NM_001006144.1  NP_001006144.1 
    About this table        Species with no ortholog for HARS

    ENSEMBL Gene Tree for HARS
    (Paralogs according to 1HomoloGene
    and 2Ensembl, Pseudogenes according to 3Pseudogene.org)
    About This Section

    Paralogs for HARS gene
    ENSG000001128552  

    (According to the 1NCBI SNP Database, 2Ensembl, 3PupaSUITE, and UniProtKB, Linkage Disequilibrium by HapMap, Genotyping Reagents from Applied Biosystems)
    About This Section


    10/80 NCBI SNPs in HARS are shown (see all 80 )
    (Click for Applied Biosystems TaqMan ® Genotyping Assay)  (see all 64)
    ABGenomic DataTranscription DataAllele Frequencies
    SNP IDValidChr 5 posSequenceRecsAA
    Chg
    TypeMoreRecsAllele
    freq
    PopTotal
    sample
    More
    ------------
    --
    rs10502501,2
    H140037486(-) TTGCTA/GTCTGT 1 I/V mis1 ese35Minor allele frequency- G:0.00MN EU EA WA 590
    rs22303611,2
    C,F,O140037719(-) ATGTGC/TGAGAT 1 C/C syn19Minor allele frequency- T:0.04MN NA EU EA WA 674
    rs20735121,2
    C,F,H,O140039077(+) GAAGGC/TTCAAA 1 -- int19Minor allele frequency- N:0.00EA EU WA NA 1936
    rs8113821,2
    A,C,F,H140037400(-) GACTTC/TTTTTC 1 -- int1 trp35Minor allele frequency- T:0.21MN EU EA WA 602
    rs8011851,2
    A,C,F,H140049053(-) ggtatT/Ccacat 1 -- int14Minor allele frequency- C:0.46EU EA WA 418
    rs25302391,2
    A,C,F,H140042731(-) AGAAGA/GGGGAC 1 -- int1 trp34Minor allele frequency- G:0.46EU EA WA 412
    --
    rs8011861,2
    C,F,H140047962(-) AcaagA/Gctctt 1 -- int18Minor allele frequency- G:0.18EU EA WA 838
    rs119545141,2
    C,F,H140036959(+) CCTGGA/CCTCTA 1 -- int111Minor allele frequency- C:0.05NA EU EA WA 978
    rs7023961,2
    C,F,H140048292(-) tgttaG/Cttttg 1 -- int111Minor allele frequency- C:0.18EU EA WA NA 966
    --
    rs117453721,2
    A,C140046454(+) aacctC/Ttgctt 1 -- int10--------
    About this table

    HapMap Linkage Disequilibrium images for HARS (up to first 250kb)

    (in which this Gene is Involved, According to OMIM, UniProtKB, Novoseek, PharmGKB, Genatlas, GeneTests, Blood group antigen gene mutations by BGMUT, HGMD, GAD, HuGE Navigator, BCGD, and/or TGDB.)
    About This Section

    OMIM: 142810

    2 Novoseek disease relationships for HARS gene

    Disease   Score   Articles   PubMed IDs for Articles with Shared Sentences (# sentences)
    myositis 78.71 11 9287147 (4), 1688885 (2), 17665459 (1)
    polymyositis 66.33 1 12235211 (1)
    About this table

    Human Gene Mutation Database: HARS

    (Possibly Related Articles in Doctor's Guide)
    About This Section

    (in PubMed. Associations of this gene to articles via 1Novoseek, 2HGNC, 3Entrez Gene, 4UniProtKB/Swiss-Prot, 5UniProtKB/TrEMBL, 6GAD, and/or 7PharmGKB)
    About This Section

    10/28 PubMed articles for HARS gene (see all 28 ):
    (in PubMed, OMIM, and NCBI Bookshelf)
    About This Section

     ANDOR
    Aliases
    Free Text  

      Query String
    PubMed
    OMIM
    NCBI Bookshelf
      (Note: In FireFox, select the above section and copy using Ctrl-C)
    (According to Entrez Gene, HGNC, AceView, euGenes, Ensembl, miRBase, ECgene, and/or H-InvDB)
    About This Section

    Entrez Gene: 3035 HGNC: 4816 AceView: HARS Ensembl:ENSG00000170445 euGenes: HUgn3035
    ECgene: HARS H-InvDB: HARS
    (According to HUGE)
    About This Section

      --
    (According to ATLAS, HORDE, IMGT, MTDB, LEIDEN, UniProtKB/Swiss-Prot, and/or UniProtKB/TrEMBL,
    Wikipedia and/or GeneReviews via UniProtKB/Swiss-Prot)
    About This Section

      --
    (Available from WIS Yeda, Salk, Tufts)
    About This Section

      --
    (Reagents available from Applied Biosystems, Antibodies and assays by Cell Signaling Technology, Abcam, Novus Biologicals,
    Sigma-Aldrich, R&D Systems, Millipore, Abnova, and/or Invitrogen, Clones available from OriGene,and/or Invitrogen, Drugs and/or compounds by Sigma-Aldrich,
    Enzo Life Sciences, and/or Tocris Bioscience)
    About This Section



    Products for HARS:
     TaqMan ® Gene Expression Assays
     TaqMan ® Genotyping Assays
      Free SNP selection tool



      Invitrogen iPath Pathways  Invitrogen BLOCK-iT™ RNAi
      Invitrogen Antibodies  Invitrogen Assays
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     Predesigned and custom siRNAs for HARS Antibodies for HARS
     Explore super-pooled esiRNAs Proteins for HARS
     Lentivirus-delivered shRNAs for HARS Browse small molecules at Sigma-Aldrich
     "Your Favorite Gene" Pathwaysfeedback


      
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     Antibodies for HARS

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