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Aliases for HAR1B Gene

Subcategory (RNA class) for HAR1B Gene

non-coding RNA

Quality Score for this RNA gene is


Aliases for HAR1B Gene

  • Highly Accelerated Region 1B (Non-Protein Coding) 2 3 5
  • Highly Accelerated Region 1B (Non-Protein-Coding RNA) 2 3
  • Long Intergenic Non-Protein Coding RNA 65 2 3
  • Human Accelerated Region 1, Reverse 2 3
  • Non-Protein Coding RNA 65 2
  • NCRNA00065 3
  • LINC00065 3
  • HAR1R 3

External Ids for HAR1B Gene

Previous GeneCards Identifiers for HAR1B Gene

  • GC20U900287
  • GC20M061197
  • GC20M061726
  • GC20M058445

Summaries for HAR1B Gene

GeneCards Summary for HAR1B Gene

HAR1B (Highly Accelerated Region 1B (Non-Protein Coding)) is an RNA Gene, and is affiliated with the non-coding RNA class.

No data available for Entrez Gene Summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for HAR1B Gene

Genomics for HAR1B Gene

Regulatory Elements for HAR1B Gene

Enhancers for HAR1B Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH20F063101 0.9 ENCODE 16.7 -0.1 -116 1.7 PKNOX1 NFXL1 ZNF48 GLIS2 ZNF366 CREM ZEB2 ZFP69B ZNF341 GLIS1 HAR1B HAR1A MIR4758 SOX18 LOC105372719
GH20F064068 1.1 Ensembl ENCODE 5.6 -967.3 -967282 1.6 HDGF ARID4B ZNF48 RAD21 RARA SLC30A9 GLIS2 SCRT2 ZNF143 ZNF207 RGS19 HAR1B LINC00176 PRPF6 MIR6813 ENSG00000237371
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around HAR1B on UCSC Golden Path with GeneCards custom track

Promoters for HAR1B Gene
Ensembl Regulatory Elements (ENSRs) TSS Distance (bp) Size (bp) Binding Sites for Transcription Factors within promoters
ENSR00000404281 -181 1401 PKNOX1 NFXL1 ZNF48 GLIS2 ZNF366 CREM ZEB2 ZFP69B ZNF341 GLIS1

Genomic Location for HAR1B Gene

63,095,493 bp from pter
63,102,319 bp from pter
6,827 bases
Minus strand

Genomic View for HAR1B Gene

Genes around HAR1B on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
HAR1B Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for HAR1B Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for HAR1B Gene

Proteins for HAR1B Gene

Post-translational modifications for HAR1B Gene

No Post-translational modifications

No data available for DME Specific Peptides for HAR1B Gene

Domains & Families for HAR1B Gene

Gene Families for HAR1B Gene

Graphical View of Domain Structure for InterPro Entry

genes like me logo Genes that share domains with HAR1B: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for HAR1B Gene

Function for HAR1B Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for HAR1B Gene

Localization for HAR1B Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for HAR1B Gene

Pathways & Interactions for HAR1B Gene

SuperPathways for HAR1B Gene

No Data Available

Interacting Proteins for HAR1B Gene

Gene Ontology (GO) - Biological Process for HAR1B Gene


No data available for Pathways by source and SIGNOR curated interactions for HAR1B Gene

Transcripts for HAR1B Gene

mRNA/cDNA for HAR1B Gene

(3) Additional mRNA sequences :
(2) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Unigene Clusters for HAR1B Gene

Highly accelerated region 1B (non-protein coding):
Representative Sequences:

Alternative Splicing Database (ASD) splice patterns (SP) for HAR1B Gene

No ASD Table

Relevant External Links for HAR1B Gene

GeneLoc Exon Structure for
ECgene alternative splicing isoforms for

Expression for HAR1B Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for HAR1B Gene

mRNA differential expression in normal tissues according to GTEx for HAR1B Gene

This gene is overexpressed in Testis (x5.3), Brain - Nucleus accumbens (basal ganglia) (x4.9), Brain - Cortex (x4.8), Brain - Frontal Cortex (BA9) (x4.2), Brain - Putamen (basal ganglia) (x4.0), and Brain - Anterior cingulate cortex (BA24) (x4.0).

NURSA nuclear receptor signaling pathways regulating expression of HAR1B Gene:


SOURCE GeneReport for Unigene cluster for HAR1B Gene:

genes like me logo Genes that share expression patterns with HAR1B: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners and mRNA Expression by UniProt/SwissProt for HAR1B Gene

Orthologs for HAR1B Gene

Evolution for HAR1B Gene

Gene Tree for HAR1B (if available)
Gene Tree for HAR1B (if available)

No data available for Orthologs for HAR1B Gene

Paralogs for HAR1B Gene

No data available for Paralogs for HAR1B Gene

Variants for HAR1B Gene

Sequence variations from dbSNP and Humsavar for HAR1B Gene

SNP ID Clin Chr 20 pos Sequence Context AA Info Type
rs111284114 -- 63,097,356(+) TTGTT(C/T)GGCCA intron-variant
rs111308366 -- 63,101,714(+) CTCCC(C/T)CTCTC intron-variant, nc-transcript-variant
rs111317876 -- 63,102,272(+) CGAAT(C/G)CCGTT nc-transcript-variant
rs111339348 -- 63,101,425(+) CAGGG(C/T)AGCCC intron-variant, nc-transcript-variant
rs111435192 -- 63,102,838(+) CTCAC(A/G)CTGCA nc-transcript-variant, upstream-variant-2KB

Structural Variations from Database of Genomic Variants (DGV) for HAR1B Gene

Variant ID Type Subtype PubMed ID
dgv68n68 CNV loss 17160897
esv1000562 CNV insertion 20482838
esv2537683 CNV loss 19546169
esv3433872 CNV duplication 20981092
esv3442438 CNV insertion 20981092
esv3893358 CNV loss 25118596
nsv3444 CNV insertion 18451855
nsv509783 CNV insertion 20534489
nsv513560 CNV insertion 21212237
nsv586535 CNV gain 21841781
nsv586537 CNV gain 21841781
nsv834028 CNV loss 17160897
nsv953305 CNV deletion 24416366
nsv9825 CNV gain 18304495

Relevant External Links for HAR1B Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for HAR1B Gene

Disorders for HAR1B Gene

Relevant External Links for HAR1B

Atlas of Genetics and Cytogenetics in Oncology and Haematology:

No disorders were found for HAR1B Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for HAR1B Gene

Publications for HAR1B Gene

  1. An RNA gene expressed during cortical development evolved rapidly in humans. (PMID: 16915236) Pollard K.S. … Haussler D. (Nature 2006) 2 3 64
  2. lncRNAdb: a reference database for long noncoding RNAs. (PMID: 21112873) Amaral P.P. … Mattick J.S. (Nucleic Acids Res. 2011) 3 64

Products for HAR1B Gene

Sources for HAR1B Gene

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