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Aliases for HAR1B Gene

Subcategory (RNA class) for HAR1B Gene

lncRNA

Quality Score for this RNA gene is

3

Aliases for HAR1B Gene

  • Highly Accelerated Region 1B (Non-Protein Coding) 2 3
  • Highly Accelerated Region 1B (Non-Protein-Coding RNA) 2 3
  • Long Intergenic Non-Protein Coding RNA 65 2 3
  • HAR1R 3 6
  • Human Accelerated Region 1, Reverse 3
  • Human Accelerated Region 1 2
  • Non-Protein Coding RNA 65 2
  • NCRNA00065 3
  • LINC00065 3
  • Reverse 2

External Ids for HAR1B Gene

Summaries for HAR1B Gene

GeneCards Summary for HAR1B Gene

HAR1B (Highly Accelerated Region 1B (Non-Protein Coding)) is a RNA Gene, and belongs to lncRNA RNA class.

fRNAdb sequence ontologies for HAR1B Gene - the ORGUL cluster for this gene includes several descriptions:

  • antisense_RNA: Antisense RNA is RNA that is transcribed from the coding, rather than the template, strand of DNA. It is therefore complementary to mRNA.

  • ncRNA: An RNA transcript that does not encode for a protein rather the RNA molecule is the gene product.

No data available for Entrez Gene Summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary and piRNA Summary for HAR1B Gene

Genomics for HAR1B Gene

Genomic Location for HAR1B Gene

Start:
63,095,493 bp from pter
End:
63,102,319 bp from pter
Size:
6,827 bases
Orientation:
Minus strand

Genomic View for HAR1B Gene

UCSC Golden Path with GeneCards custom track
Cytogenetic band:
Genomic Location for HAR1B Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for HAR1B Gene

Regulatory Elements for HAR1B Gene

Proteins for HAR1B Gene

Post-translational modifications for HAR1B Gene

No Post-translational modifications

No data available for DME Specific Peptides for HAR1B Gene

Domains for HAR1B Gene

Gene Families for HAR1B Gene

HGNC:
  • LNCRNA :Long non-coding RNAs
genes like me logo Genes that share domains with HAR1B: view

No data available for Protein Domains and UniProtKB/Swiss-Prot for HAR1B Gene

Function for HAR1B Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Animal Models , miRNA , Transcription Factor Targeting and HOMER Transcription for HAR1B Gene

Localization for HAR1B Gene

No data available for Gene Ontology (GO) - Cellular Components for HAR1B Gene

Pathways for HAR1B Gene

SuperPathways for HAR1B Gene

No Data Available

Interacting Proteins for HAR1B Gene

Gene Ontology (GO) - Biological Process for HAR1B Gene

None

No data available for Pathways by source for HAR1B Gene

Transcripts for HAR1B Gene

mRNA/cDNA for HAR1B Gene

(3) Additional mRNA sequences :
(4) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Unigene Clusters for HAR1B Gene

Highly accelerated region 1B (non-protein coding):
Representative Sequences:

Alternative Splicing Database (ASD) splice patterns (SP) for HAR1B Gene

No ASD Table

Relevant External Links for HAR1B Gene

GeneLoc Exon Structure for
HAR1B
ECgene alternative splicing isoforms for
HAR1B

Expression for HAR1B Gene

mRNA expression in normal human tissues for HAR1B Gene

mRNA differential expression in normal tissues according to GTEx for HAR1B Gene

This gene is overexpressed in Testis (5.3), Brain - Nucleus accumbens (basal ganglia) (4.9), Brain - Cortex (4.8), Brain - Frontal Cortex (BA9) (4.2), Brain - Putamen (basal ganglia) (4.0), and Brain - Anterior cingulate cortex (BA24) (4.0).

SOURCE GeneReport for Unigene cluster for HAR1B Gene Hs.635159

genes like me logo Genes that share expressions with HAR1B: view

Orthologs for HAR1B Gene

Evolution for HAR1B Gene

ENSEMBL:
Gene Tree for HAR1B (if available)
TreeFam:
Gene Tree for HAR1B (if available)

No data available for Orthologs for HAR1B Gene

Paralogs for HAR1B Gene

No data available for Paralogs for HAR1B Gene

Variants for HAR1B Gene

Sequence variations from dbSNP and Humsavar for HAR1B Gene

SNP ID Clin Chr 20 pos Sequence Context AA Info Type MAF
rs2427494 -- 63,097,157(+) GGGAA(C/G)CCCAA intron-variant
rs3810461 -- 63,097,499(+) CGGAA(A/C/T)GTCGA intron-variant
rs3810462 -- 63,097,674(+) GCGGG(G/T)CCGGC intron-variant
rs4809276 -- 63,097,846(+) TGAAG(A/G)CCAGG intron-variant
rs6010842 -- 63,097,554(+) TCCCC(A/C)ACACG intron-variant

Structural Variations from Database of Genomic Variants (DGV) for HAR1B Gene

Variant ID Type Subtype PubMed ID
nsv913073 CNV Loss 21882294
nsv9825 CNV Gain 18304495
dgv4618n71 CNV Loss 21882294
dgv4623n71 CNV Loss 21882294
nsv834028 CNV Loss 17160897
dgv4625n71 CNV Loss 21882294
nsv913160 CNV Loss 21882294
nsv913161 CNV Loss 21882294
nsv509783 CNV Insertion 20534489
nsv913162 CNV Loss 21882294
dgv68n68 CNV Loss 17160897
nsv913163 CNV Loss 21882294
nsv3444 CNV Insertion 18451855
esv1000562 CNV Insertion 20482838
nsv513560 CNV Insertion 21212237
esv2537683 CNV Loss 19546169

Relevant External Links for HAR1B Gene

HapMap Linkage Disequilibrium report
HAR1B

Disorders for HAR1B Gene

No disorders were found for HAR1B Gene.

No data available for UniProtKB/Swiss-Prot for HAR1B Gene

Publications for HAR1B Gene

  1. An RNA gene expressed during cortical development evolved rapidly in humans. (PMID: 16915236) Pollard K.S. … Haussler D. (Nature 2006) 2 3

Products for HAR1B Gene

  • QIAGEN qRT-PCR Assays for microRNAs that regulate HAR1B
    • QuantiTect SYBR Green Assays in human,mouse,rat
    • Pre-validated RT² qPCR Primer Assay in human,mouse,rat
    • QuantiFast Probe-based Assays in human,mouse,rat
    • Predesigned siRNA for gene silencing in human,mouse,rat for HAR1B
    • Block miRNA regulation of HAR1B using miScript Target Protectors

    Sources for HAR1B Gene

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