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Aliases & Descriptions for HAPLN1
(According to
1HGNC,
2Entrez Gene,
3UniProtKB/Swiss-Prot,
4UniProtKB/TrEMBL, 5OMIM, 6GeneLoc
, and/or 7Ensembl,
8miRBase) About This Section
|
| Aliases |
|---|
| CRTL1 2, 3 | | LP 3 | | OTTHUMP00000147586 2 |
| | | Descriptions |
|---|
| Cartilage link protein 2, 3 | | Proteoglycan link protein 3 | | cartilage linking protein 1 1, 2 | | hyaluronan and proteoglycan link protein 1 2 |
|
| | Search outside databases for aliases for HAPLN1 genePrevious GC identifer: GC05M083020 |
Summaries for HAPLN1(According to Entrez Gene,
Wikipedia's
Gene Wiki,
UniProtKB/Swiss-Prot,
and/or
UniProtKB/TrEMBL)
About This Section
| UniProtKB/Swiss-Prot: HPLN1_HUMAN, P10915Function: Stabilizes the aggregates of proteoglycan monomers with hyaluronic acid in the extracellular cartilage matrixGene Wiki entry for HAPLN1 |
Genomic Location for HAPLN1
(According to
GeneLoc and/or
HGNC, and/or
Entrez Gene (NCBI build 36),
and/or miRBase,
Genomic Views according to
UCSC and
Ensembl,
Transcription factor binding sites according to
SABiosciences) About This Section
| Genomic View: UCSC Golden Path with GeneCards custom track
Transcription factor binding sites upstream to the HAPLN1 gene 
Entrez Gene cytogenetic band: 5q14.3 Ensembl cytogenetic band: 5q14.3 HGNC cytogenetic band: 5q14.3HAPLN1 Gene in genomic location: bands according to Ensembl, locations according to
(and/or Entrez Gene and/or Ensembl if different)
 GeneLoc gene densities for chromosome 5 GeneLoc Exon Structure GeneLoc location for GC05M082972:
(about GC identifiers)
Start:
|
82,972,493 bp from pter |
End:
|
83,052,454 bp from pter |
Size:
|
79,962 bases |
Orientation:
|
minus strand |
RefSeq DNA sequence:- NC_000005.8 NT_006713.14
| Proteins for HAPLN1
(According to
1UniProtKB,
and/or Ensembl,
Phosphorylation sites according to 2Phosphosite,
RefSeq according to NCBI,
PDB rendering according to OCA and/or Proteopedia,
Recombinant Proteins
from Invitrogen,
Millipore,
Sigma-Aldrich,
R&D Systems,
Enzo Life Sciences,
Abnova,
OriGene and/or,
Abcam,
Biochemical Assays by
Invitrogen,
Millipore,
R&D Systems,
Cell Signaling Technology, and/or
Enzo Life Sciences,
Ontologies according to Gene
Ontology Consortium 01 Apr 2009 and
Entrez Gene,
Antibodies by Invitrogen,
Millipore,
Sigma-Aldrich,
R&D Systems,
Cell Signaling Technology,
Abcam,
Abnova, and/or
Novus Biologicals)
About This Section
| UniProtKB/Swiss-Prot: HPLN1_HUMAN, P10915 (See
protein sequence)Recommended Name: Hyaluronan and proteoglycan link protein 1 precursor Size: 354 amino acids; 40166 Da
Subcellular location: Secreted, extracellular space, extracellular matrixPost-translational modifications:
View phosphorylation sites using PhosphoSite2
REFSEQ proteins: NP_001875.1
ENSEMBL proteins: ENSP00000274341 ENSP00000369486
Human Recombinant Proteins               OriGene Purified Recombinant Human Protein: HAPLN1 
2 Gene Ontology (GO) cellular component terms (links to tree view): About this table
Antibodies for HAPLN1: Assays for HAPLN1: | Protein
Domains/ Families for HAPLN1(According to InterPro, ProtoNet,
UniProtKB, and/or BLOCKS,
Sets of similar genes according to GeneDecks)
About This Section
| - Graphical View of Domain Structure for InterPro Entry P10915
ProtoNet protein and cluster: P10915 3 Blocks protein families: IPB000538 Link domain IPB003596 Immunoglobulin V-type IPB013106 Immunoglobulin V-set
UniProtKB/Swiss-Prot: HPLN1_HUMAN, P10915Similarity: Belongs to the HAPLN familySimilarity: Contains 1 Ig-like V-type (immunoglobulin-like) domainSimilarity: Contains 2 Link domains | Gene Function for HAPLN1
(According to MGI Jun 06 2009, UniProtKB,
IUBMB,and/or Genatlas,
shRNA from
OriGene,
Sigma-Aldrich, RNAi from
Sigma-Aldrich,
RNAi Products,
Clones, and
Q-PCR Products
from Invitrogen,
Millipore,
OriGene, and/or
Abnova,
siRNAs from
Applied Biosystems,
SYBR primers from OriGene,
Cell-based Assays from Millipore,
Ontologies according to Gene Ontology Consortium 01 Apr 2009 via
Entrez Gene.)
About This Section
|               OriGene 29mer shRNA kit in GFP-retroviral vector: NM_001884
Applied Biosystems Silencer® siRNAs for HAPLN1
Sigma-Aldrich siRNA for HAPLN1  Sigma-Aldrich shRNA Panels and shRNA for HAPLN1  Explore Sigma-Aldrich super-pooled esiRNAs 
              OriGene GFP tagged cDNA clone in CMV expression vector: NM_001884                                  Myc/DDK tagged cDNA clone in CMV expression vector: NM_001884                                  untagged cDNA clone in CMV expression vector: NM_001884 
Primers: Browse
Quantitative PCR Central at Invitrogen for Q-PCR LUX™ Primers               OriGene genome-wide validated SYBR primer pairs: NM_001884
UniProtKB/Swiss-Prot: HPLN1_HUMAN, P10915Function: Stabilizes the aggregates of proteoglycan monomers with hyaluronic acid in the extracellular cartilage matrix6 MGI mutant phenotypes (inferred from 1 allele ) (MGI details for Hapln1):
2 Gene Ontology (GO) molecular function terms (links to tree view): | GO ID | Qualified GO term | Evidence | PubMed IDs |
|---|
| GO:0005488 | binding |
IEA | -- | | GO:0005540 | hyaluronic acid binding |
IEA | -- | About this table | Pathways & Interactions for HAPLN1
(Pathways according to Invitrogen
(maps by GeneGo),
Millipore,
Cell Signaling Technology,
Sigma-Aldrich,
KEGG
and/or UniProtKB,
Sets of similar genes according to GeneDecks,
Proteins Network according to
SABiosciences,
Interactions according to 1UniProtKB,
2MINT, and/or
3STRING,
with links to IntAct and
Ensembl,
Ontologies according to Gene Ontology Consortium 01 Apr 2009 via
Entrez Gene.)
About This Section
|
5/17 Interacting proteins for HAPLN1 (ENSP000002743413) via UniProtKB, MINT, and/or STRING (see all 17
)About this table
1 Gene Ontology (GO) biological process term (links to tree view): | GO ID | Qualified GO term | Evidence | PubMed IDs |
|---|
| GO:0007155 | cell adhesion |
IEA | -- | About this table
|
Drugs & Compounds for HAPLN1(Chemical Compounds according to UniProtKB, Enzo Life Sciences,
Sigma-Aldrich, Tocris Bioscience, and/or
Novoseek and Drugs according to
Enzo Life Sciences and/or
PharmGKB)
About This Section
|
Browse Tocris compounds for HAPLN1 5 Novoseek chemical compound relationships for HAPLN1 gene
About this table
|
Transcripts for HAPLN1(GenBank/EMBL/DDBJ Accessions according to
Unigene
(Build 219 Homo sapiens; Jun 2 2009) or GenBank, RefSeq according to Entrez Gene,
DOTS (version 10), and/or
AceView,
non coding RNAs according to
RNAdb,
ESTs according to GeneTide,
exon structure from GeneLoc,
alternative splicing isoforms according to ASD and/or
ECgene,
RNAi Products from Invitrogen,
Millipore, and/or
Abnova,
siRNAs from Applied Biosystems,
Sigma-Aldrich,
shRNA from
Sigma-Aldrich,
OriGene,
Tagged/untagged cDNA clones from
OriGene, Expression Assays from Applied Biosystems) About This Section
|               OriGene 29mer shRNA kit in GFP-retroviral vector: NM_001884
Sigma-Aldrich siRNA for HAPLN1  Sigma-Aldrich shRNA Panels and shRNA for HAPLN1  Explore Sigma-Aldrich super-pooled esiRNAs 
Applied Biosystems Silencer® siRNAs: NM_001884 REFSEQ mRNAs for HAPLN1 gene: NM_001884.3
Applied Biosystems TaqMan ® Gene Expression Assays: NM_001884               OriGene GFP tagged cDNA clone in CMV expression vector: NM_001884                                  Myc/DDK tagged cDNA clone in CMV expression vector: NM_001884                                  untagged cDNA clone in CMV expression vector: NM_001884  Additional cDNA sequence: AK313713.1 BC057808.1 CR597704.1 CR605965.1 M63579.1 U43328.1 X17405.1 X78075.1 X78076.1 5 DOTS entries: DT.117144 DT.95367165 DT.100019919 DT.100843660 DT.120797267 24/128 AceView cDNA sequences (see all 128
):M63579 BQ183835 BU735930 BX396679 BF589298 CB157941 CN485077 AU117138 CR605965 BX282759 CB132999 AI052715 BQ573708 BI493085 CA412730 BI493084 AU117728 CA413596 CA412005 AI494580 CR597704 CA414697 AA664475 BQ573867
highest scoring ESTs for HAPLN1:U43328 AA115901 AU117138 AU117728 AU119529 AU279695 BG283479 BX282759 CB143656 CB146759 Unigene Cluster for HAPLN1: Hyaluronan and proteoglycan link protein 1 Hs.2799 [show with all ESTs]Unigene Representative Sequence: NM_001884
GeneLoc Exon Structure
5/6 Alternative Splicing Database (ASD) splice patterns (SP) for HAPLN1 (see all 6
)
| ExUns: | 1 | ^ | 2 | ^ | 3 | ^ | 4 | ^ | 5a | · | 5b | · | 5c | ^ | 6a | · | 6b | · | 6c | ^ | 7a | · | 7b | · | 7c | ^ | 8a | · | 8b | |
| SP1: | |   | - |   | - |   | - |   | - |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |
| SP2: | |   | |   | |   | |   | - |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |
| SP3: | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |
| SP4: | |   | |   | - |   | - |   | - |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |
| SP5: | |   | |   | |   | - |   | - |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   |
About this scheme
ECgene alternative splicing isoforms for HAPLN1
2 Ensembl transcripts including schematic representations: ENST00000274341
ENST00000380141
|
Expression for HAPLN1
(Experimental results according to
1GeneNote
and GNF BioGPS,
probe sets-to-genes annotations according to
2GeneAnnot ,
3GeneTide ,
Sets of similar genes according to GeneDecks,
Electronic Northern calculations according to data from
UniGene (Build 219 Homo sapiens),
SAGE tags according to
CGAP,
plus additional links to
SOURCE, and/or
GNF
BioGPS, and/or
EXPOLDB, and/or
UniProtKB,
Expression Assays from
Applied Biosystems
)
About This Section
| HAPLN1 expression in normal and diseased human tissues
Applied Biosystems TaqMan ® Gene Expression Assays for HAPLN1
1 / 2 / 3 11 probe-sets matching HAPLN1 gene Data from
(Publications) and GNF BioGPS About these images About these images
CGAP SAGE TAG: --
SOURCE GeneReport for Unigene cluster: Hs.2799
Expression variation in blood from EXPOLDB for HAPLN1 UniProtKB/Swiss-Prot: HPLN1_HUMAN, P10915Tissue specificity: Widely expressed. Weakly expressed in the brain |
Orthologs for HAPLN1
(Orthologs according to
1,2HomoloGene (2older version, for species not in 1newer version),
3euGenes,
4SGD
and/or
5MGI Jun 06 2009,
with possible further links to
Flybase
and/or
WormBase,
Gene Trees according to Ensembl)
About This Section
|
Orthologs for HAPLN1 gene from 5/7 species (see all 7
)
About this table Species with no ortholog for HAPLN1
ENSEMBL Gene Tree for HAPLN1 | Paralogs for HAPLN1(Paralogs according to 1HomoloGene and 2Ensembl, Pseudogenes according to 3Pseudogene.org) About This Section
| Paralogs for HAPLN1 gene
- HAPLN42 HAPLN32 NCAN2 HAPLN22
|
SNPs/Variants for HAPLN1(According to the
1NCBI SNP Database,
2Ensembl,
3PupaSUITE, and
UniProtKB,
Linkage Disequilibrium by HapMap,
Genotyping Reagents from
Applied Biosystems)
About This Section
|
HapMap Linkage Disequilibrium images for HAPLN1 (up to first 250kb)
|
Disorders & Mutations for HAPLN1
(in which this Gene is Involved, According to
OMIM, UniProtKB,
Novoseek, PharmGKB,
Genatlas, GeneTests,
Blood group antigen gene mutations by BGMUT,
HGMD, GAD,
HuGE Navigator,
BCGD,
and/or TGDB.)
About This Section
|
OMIM: 115435
6 Novoseek disease relationships for HAPLN1 gene
About this table
|
Medical News for HAPLN1(Possibly Related Articles in
Doctor's Guide)
About This Section
| -- |
Publications for HAPLN1 (in
PubMed.
Associations of this gene to articles via
1Novoseek,
2HGNC,
3Entrez Gene,
4UniProtKB/Swiss-Prot,
5UniProtKB/TrEMBL,
6GAD, and/or
7PharmGKB)
About This Section
| 10/78 PubMed articles for HAPLN1 gene (see all 78
):- Complete amino acid sequence of human cartilage link protein (CRTL1) deduced from cDNA clones and chromosomal assignment of the gene. (PubMed id 2286376)1, 2, 3, 4 Osborne-Lawrence S.L.... Duby A.D. (1990)
- The primary structure of human cartilage link protein. (PubMed id 2320422)2, 3, 4 Dudhia J. and Hardingham T.E. (1990)
- A hyaluronan binding link protein gene family whose members are physically linked adjacent to chondroitin sulfate proteoglycan core protein genes: the missing links. (PubMed id 12663660)1, 3, 4 Spicer A.P.... Bowling R.A. Jr. (2003)
- The brain link protein-1 (BRAL1): cDNA cloning, genomic structure, and characterization as a novel link protein expressed in adult brain. (PubMed id 11027579)1, 3, 4 Hirakawa S....Ninomiya Y. (2000)
- The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC). (PubMed id 15489334)3, 4 Gerhard D.S....Malek J. (2004)
- Characterization of the promoter for the rat and human link protein gene. (PubMed id 2030970)3, 4 Rhodes C....Yamada Y. (1991)
- The primary structure of human cartilage link protein. (PubMed id 2336413)3, 4 Dudhia J. and Hardingham T.E. (1990)
- Production of cartilage link protein by human granulosa-lutein cells. (PubMed id 12429048)1, 3 Sun G.W....Terao T. (2002)
- SOX9-dependent and -independent transcriptional regulation of human cartilage link protein. (PubMed id 15456769)1, 3 Kou I. and Ikegawa S. (2004)
- Distinct interaction of versican/PG-M with hyaluronan and link protein. (PubMed id 12888576)1, 3 Matsumoto K....Watanabe H. (2003)
|
Search for HAPLN1
(in PubMed,
OMIM, and NCBI Bookshelf) About This Section
|
|
Genome Databases showing HAPLN1
(According to
Entrez Gene,
HGNC,
AceView,
euGenes,
Ensembl,
miRBase,
ECgene,
and/or
H-InvDB)
About This Section
|
| Other Databases showing HAPLN1
(According to HUGE)
About This Section
| -- |
Specialized Databases showing HAPLN1(According to ATLAS, HORDE, IMGT, MTDB, LEIDEN, UniProtKB/Swiss-Prot, and/or UniProtKB/TrEMBL, Wikipedia and/or GeneReviews via UniProtKB/Swiss-Prot) About This Section
|
| About This Section
| --
| Services for HAPLN1(Reagents available from Applied Biosystems, Antibodies and assays by Cell
Signaling Technology, Abcam, Novus Biologicals, Sigma-Aldrich, R&D Systems, Millipore, Abnova, and/or Invitrogen, Clones available from OriGene,and/or Invitrogen, Drugs and/or compounds by Sigma-Aldrich, Enzo Life Sciences, and/or Tocris Bioscience) About This Section
| 
 Products for HAPLN1:

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Incremental update: 13 Oct 2009
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