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Aliases for HAO2-IT1 Gene

Subcategory (RNA class) for HAO2-IT1 Gene

non-coding RNA

Quality Score for this RNA gene is

3

Aliases for HAO2-IT1 Gene

  • HAO2 Intronic Transcript 1 2 3 5
  • HAO2 Intronic Transcript 1 (Non-Protein Coding) 2

External Ids for HAO2-IT1 Gene

Previous GeneCards Identifiers for HAO2-IT1 Gene

  • GC00U933444
  • GC01P119914

Summaries for HAO2-IT1 Gene

GeneCards Summary for HAO2-IT1 Gene

HAO2-IT1 (HAO2 Intronic Transcript 1) is an RNA Gene, and is affiliated with the non-coding RNA class.

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for HAO2-IT1 Gene

Genomics for HAO2-IT1 Gene

Regulatory Elements for HAO2-IT1 Gene

Enhancers for HAO2-IT1 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH01G119339 1 ENCODE 11.2 -27.8 -27763 2.8 FOXA2 ATF1 MLX ARID4B DMAP1 ZNF48 YY1 MIER2 PPARG KAT8 HAO2 HAO2-IT1 PIR50994 PIR56417
GH01G119327 1 ENCODE 10.9 -41.6 -41604 1.6 PKNOX1 ARNT ARID4B FEZF1 DMAP1 ZNF2 ZNF48 ZNF121 GLIS2 ZNF143 HAO2 HAO2-IT1 ENSG00000227712 LINC01780
GH01G119278 0.8 ENCODE 11.7 -89.1 -89055 1.9 GTF2F1 JUN MAX RFX5 TEAD3 HIC1 CTBP1 FOSL2 FOS TCF7L2 HAO2 HAO2-IT1 RNU1-75P WARS2 GC01P119270 ENSG00000227712
GH01G119428 0.8 ENCODE 10.3 +60.4 60385 2.4 INSM2 FEZF1 HIC1 ZNF316 ZNF366 SCRT2 ZNF169 ZSCAN5C MAFK SCRT1 HAO2 HAO2-IT1 GAPDHP74 HSD3B2
GH01G119285 0.6 ENCODE 12.1 -83.3 -83314 0.2 MAFF ZNF316 FOS EMSY PRDM4 MAFK HAO2-IT1 HAO2 LOC101929147 GC01P119270 ENSG00000227712
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around HAO2-IT1 on UCSC Golden Path with GeneCards custom track

Genomic Location for HAO2-IT1 Gene

Chromosome:
1
Start:
119,368,946 bp from pter
End:
119,370,331 bp from pter
Size:
1,386 bases
Orientation:
Plus strand

Genomic View for HAO2-IT1 Gene

Genes around HAO2-IT1 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
HAO2-IT1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for HAO2-IT1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for HAO2-IT1 Gene

Proteins for HAO2-IT1 Gene

Post-translational modifications for HAO2-IT1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for HAO2-IT1 Gene

Domains & Families for HAO2-IT1 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for HAO2-IT1 Gene

Function for HAO2-IT1 Gene

Animal Model Products

Clone Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for HAO2-IT1 Gene

Localization for HAO2-IT1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for HAO2-IT1 Gene

Pathways & Interactions for HAO2-IT1 Gene

SuperPathways for HAO2-IT1 Gene

No Data Available

Interacting Proteins for HAO2-IT1 Gene

Gene Ontology (GO) - Biological Process for HAO2-IT1 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for HAO2-IT1 Gene

Drugs & Compounds for HAO2-IT1 Gene

No Compound Related Data Available

Transcripts for HAO2-IT1 Gene

mRNA/cDNA for HAO2-IT1 Gene

(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for HAO2-IT1 Gene

No ASD Table

Relevant External Links for HAO2-IT1 Gene

GeneLoc Exon Structure for
HAO2-IT1
ECgene alternative splicing isoforms for
HAO2-IT1

Expression for HAO2-IT1 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for HAO2-IT1 Gene

mRNA differential expression in normal tissues according to GTEx for HAO2-IT1 Gene

This gene is overexpressed in Liver (x22.4), Adrenal Gland (x10.1), and Kidney - Cortex (x4.3).
genes like me logo Genes that share expression patterns with HAO2-IT1: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for HAO2-IT1 Gene

Orthologs for HAO2-IT1 Gene

Evolution for HAO2-IT1 Gene

ENSEMBL:
Gene Tree for HAO2-IT1 (if available)
TreeFam:
Gene Tree for HAO2-IT1 (if available)

No data available for Orthologs for HAO2-IT1 Gene

Paralogs for HAO2-IT1 Gene

No data available for Paralogs for HAO2-IT1 Gene

Variants for HAO2-IT1 Gene

Sequence variations from dbSNP and Humsavar for HAO2-IT1 Gene

SNP ID Clin Chr 01 pos Sequence Context AA Info Type
rs1000273054 -- 119,370,724(+) AGTTG(A/G)TCGGT intron-variant, downstream-variant-500B
rs1002718190 -- 119,369,219(+) AAAAC(A/C)TAAAA intron-variant
rs1003508832 -- 119,370,605(+) CCGTG(A/G)TGAGC intron-variant, downstream-variant-500B
rs1005822326 -- 119,370,323(+) CCTTC(C/T)TGGAT intron-variant, nc-transcript-variant
rs1006128573 -- 119,370,051(+) ATGGC(A/G)TTTTG intron-variant

Structural Variations from Database of Genomic Variants (DGV) for HAO2-IT1 Gene

Variant ID Type Subtype PubMed ID
esv2761649 CNV gain 21179565
esv34089 CNV loss 18971310
nsv1004662 CNV gain 25217958
nsv524681 CNV gain 19592680

Relevant External Links for HAO2-IT1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
HAO2-IT1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for HAO2-IT1 Gene

Disorders for HAO2-IT1 Gene

Relevant External Links for HAO2-IT1

Atlas of Genetics and Cytogenetics in Oncology and Haematology:
HAO2-IT1

No disorders were found for HAO2-IT1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for HAO2-IT1 Gene

Publications for HAO2-IT1 Gene

No publications were found for HAO2-IT1 Gene.

Products for HAO2-IT1 Gene

Sources for HAO2-IT1 Gene

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