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Aliases for HAO2-IT1 Gene

Subcategory (RNA class) for HAO2-IT1 Gene

non-coding RNA

Quality Score for this RNA gene is


Aliases for HAO2-IT1 Gene

  • HAO2 Intronic Transcript 1 2 3 5
  • HAO2 Intronic Transcript 1 (Non-Protein Coding) 2

External Ids for HAO2-IT1 Gene

Previous GeneCards Identifiers for HAO2-IT1 Gene

  • GC00U933444
  • GC01P119914

Summaries for HAO2-IT1 Gene

GeneCards Summary for HAO2-IT1 Gene

HAO2-IT1 (HAO2 Intronic Transcript 1) is an RNA Gene, and is affiliated with the non-coding RNA class.

No data available for Entrez Gene Summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for HAO2-IT1 Gene

Genomics for HAO2-IT1 Gene

Regulatory Elements for HAO2-IT1 Gene

Enhancers for HAO2-IT1 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH01F119278 1 Ensembl ENCODE 11.7 -89.1 -89055 1.9 GTF2F1 JUN MAX RFX5 TEAD3 HIC1 FOSL2 FOS DEK TCF7L2 HAO2 HAO2-IT1 RNU1-75P WARS2 GC01P119270 ENSG00000227712
GH01F119339 1 ENCODE 11.2 -27.8 -27763 2.8 ATF1 MLX ARID4B DMAP1 ZNF48 YY1 MIER2 PPARG KAT8 MIER3 HAO2 HAO2-IT1 PIR50994 PIR56417
GH01F119327 1 ENCODE 10.9 -41.6 -41604 1.6 PKNOX1 ARID4B FEZF1 DMAP1 ZNF48 ZNF2 ZNF121 GLIS2 KLF7 TSHZ1 HAO2 HAO2-IT1 ENSG00000227712 LINC01780
GH01F119285 0.6 ENCODE 12.1 -83.3 -83314 0.2 ZNF316 MAFF FOS EMSY MAFK HAO2 HAO2-IT1 LOC101929147 GC01P119270 ENSG00000227712
GH01F119428 0.7 ENCODE 10.3 +60.4 60385 2.4 INSM2 FEZF1 HIC1 ZNF316 ZNF366 ZNF169 SCRT2 MAFK SCRT1 MAZ HAO2 HAO2-IT1 GAPDHP74 HSD3B2
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around HAO2-IT1 on UCSC Golden Path with GeneCards custom track

Genomic Location for HAO2-IT1 Gene

119,368,946 bp from pter
119,370,331 bp from pter
1,386 bases
Plus strand

Genomic View for HAO2-IT1 Gene

Genes around HAO2-IT1 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
HAO2-IT1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for HAO2-IT1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for HAO2-IT1 Gene

Proteins for HAO2-IT1 Gene

Post-translational modifications for HAO2-IT1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for HAO2-IT1 Gene

Domains & Families for HAO2-IT1 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for HAO2-IT1 Gene

Function for HAO2-IT1 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for HAO2-IT1 Gene

Localization for HAO2-IT1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for HAO2-IT1 Gene

Pathways & Interactions for HAO2-IT1 Gene

SuperPathways for HAO2-IT1 Gene

No Data Available

Interacting Proteins for HAO2-IT1 Gene

Gene Ontology (GO) - Biological Process for HAO2-IT1 Gene


No data available for Pathways by source and SIGNOR curated interactions for HAO2-IT1 Gene

Transcripts for HAO2-IT1 Gene

mRNA/cDNA for HAO2-IT1 Gene

(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for HAO2-IT1 Gene

No ASD Table

Relevant External Links for HAO2-IT1 Gene

GeneLoc Exon Structure for
ECgene alternative splicing isoforms for

Expression for HAO2-IT1 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for HAO2-IT1 Gene

mRNA differential expression in normal tissues according to GTEx for HAO2-IT1 Gene

This gene is overexpressed in Liver (x22.4), Adrenal Gland (x10.1), and Kidney - Cortex (x4.3).
genes like me logo Genes that share expression patterns with HAO2-IT1: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners and mRNA Expression by UniProt/SwissProt for HAO2-IT1 Gene

Orthologs for HAO2-IT1 Gene

Evolution for HAO2-IT1 Gene

Gene Tree for HAO2-IT1 (if available)
Gene Tree for HAO2-IT1 (if available)

No data available for Orthologs for HAO2-IT1 Gene

Paralogs for HAO2-IT1 Gene

No data available for Paralogs for HAO2-IT1 Gene

Variants for HAO2-IT1 Gene

Sequence variations from dbSNP and Humsavar for HAO2-IT1 Gene

SNP ID Clin Chr 01 pos Sequence Context AA Info Type
rs10802090 -- 119,370,216(+) AGAAC(G/T)AGTCA intron-variant, nc-transcript-variant
rs10923802 -- 119,370,421(+) TCAGA(C/T)GAAAT intron-variant, downstream-variant-500B
rs111838997 -- 119,369,276(+) CTTCC(C/T)GGCCA intron-variant
rs112466439 -- 119,368,047(+) TGGCA(C/G)GTCGT intron-variant, upstream-variant-2KB
rs113277499 -- 119,368,417(+) GCCCA(A/T)GGGCT intron-variant, upstream-variant-2KB

Structural Variations from Database of Genomic Variants (DGV) for HAO2-IT1 Gene

Variant ID Type Subtype PubMed ID
nsv524681 CNV gain 19592680
nsv1004662 CNV gain 25217958
esv34089 CNV loss 18971310
esv2761649 CNV gain 21179565

Relevant External Links for HAO2-IT1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for HAO2-IT1 Gene

Disorders for HAO2-IT1 Gene

Relevant External Links for HAO2-IT1

Atlas of Genetics and Cytogenetics in Oncology and Haematology:

No disorders were found for HAO2-IT1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for HAO2-IT1 Gene

Publications for HAO2-IT1 Gene

No publications were found for HAO2-IT1 Gene.

Products for HAO2-IT1 Gene

Sources for HAO2-IT1 Gene

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