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Aliases for HAO2-IT1 Gene

Subcategory (RNA class) for HAO2-IT1 Gene

non-coding RNA

Quality Score for this RNA gene is

3

Aliases for HAO2-IT1 Gene

  • HAO2 Intronic Transcript 1 2 3 5
  • HAO2 Intronic Transcript 1 (Non-Protein Coding) 2

External Ids for HAO2-IT1 Gene

Previous GeneCards Identifiers for HAO2-IT1 Gene

  • GC00U933444
  • GC01P119914

Summaries for HAO2-IT1 Gene

GeneCards Summary for HAO2-IT1 Gene

HAO2-IT1 (HAO2 Intronic Transcript 1) is an RNA Gene, and is affiliated with the non-coding RNA class.

Additional gene information for HAO2-IT1 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for HAO2-IT1 Gene

Genomics for HAO2-IT1 Gene

GeneHancer (GH) Regulatory Elements for HAO2-IT1 Gene

Promoters and enhancers for HAO2-IT1 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH01I119368 Promoter 0.9 EPDnew 550.8 -0.2 -156 0.1 RXRA MAFG RAD21 YY1 JUND ZNF316 MAFF HNF4A EMSY MAFK HAO2 HAO2-IT1 GC01P118983
GH01I119327 Promoter/Enhancer 1.4 Ensembl ENCODE 10.9 -41.6 -41604 1.6 PKNOX1 ARNT ARID4B FEZF1 DMAP1 ZNF2 ZNF48 ZNF121 GLIS2 ZNF213 ENSG00000227712 LINC01780 LOC101929147 HAO2 HAO2-IT1 GC01P118983
GH01I119339 Enhancer 0.9 ENCODE 11.2 -27.8 -27763 2.8 FOXA2 MLX ARID4B DMAP1 ZNF48 ETS1 YY1 ATF7 RXRA MIER2 HAO2 HAO2-IT1 PIR50994 LINC01780 PIR56417 GC01P118983
GH01I119278 Enhancer 0.7 ENCODE 11.7 -89.1 -89055 1.9 JUN MAX RFX5 TEAD3 HIC1 ZNF335 CTBP1 POLR2A FOSL2 FOS HAO2 HAO2-IT1 RNU1-75P WARS2 GC01P119270 ENSG00000227712 GC01P118983
GH01I119285 Enhancer 0.6 ENCODE 12.1 -83.3 -83313 0.2 BACH1 ZNF316 MAFF FOS EMSY MAFK PRDM4 ZBTB17 HAO2 HAO2-IT1 LOC101929147 GC01P119270 ENSG00000227712 GC01P118983
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data dump

GeneHancers around HAO2-IT1 on UCSC Golden Path with GeneCards custom track

Genomic Locations for HAO2-IT1 Gene

Genomic Locations for HAO2-IT1 Gene
chr1:119,368,946-119,370,331
(GRCh38/hg38)
Size:
1,386 bases
Orientation:
Plus strand
chr1:119,911,569-119,912,954
(GRCh37/hg19)

Genomic View for HAO2-IT1 Gene

Genes around HAO2-IT1 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
HAO2-IT1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for HAO2-IT1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for HAO2-IT1 Gene

Proteins for HAO2-IT1 Gene

Post-translational modifications for HAO2-IT1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for HAO2-IT1 Gene

Domains & Families for HAO2-IT1 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for HAO2-IT1 Gene

Function for HAO2-IT1 Gene

Animal Model Products

Clone Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for HAO2-IT1 Gene

Localization for HAO2-IT1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for HAO2-IT1 Gene

Pathways & Interactions for HAO2-IT1 Gene

SuperPathways for HAO2-IT1 Gene

No Data Available

Interacting Proteins for HAO2-IT1 Gene

Gene Ontology (GO) - Biological Process for HAO2-IT1 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for HAO2-IT1 Gene

Drugs & Compounds for HAO2-IT1 Gene

No Compound Related Data Available

Transcripts for HAO2-IT1 Gene

mRNA/cDNA for HAO2-IT1 Gene

(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Clone Products

Alternative Splicing Database (ASD) splice patterns (SP) for HAO2-IT1 Gene

No ASD Table

Relevant External Links for HAO2-IT1 Gene

GeneLoc Exon Structure for
HAO2-IT1
ECgene alternative splicing isoforms for
HAO2-IT1

Expression for HAO2-IT1 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for HAO2-IT1 Gene

mRNA differential expression in normal tissues according to GTEx for HAO2-IT1 Gene

This gene is overexpressed in Liver (x22.4), Adrenal Gland (x10.1), and Kidney - Cortex (x4.3).
genes like me logo Genes that share expression patterns with HAO2-IT1: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for HAO2-IT1 Gene

Orthologs for HAO2-IT1 Gene

Evolution for HAO2-IT1 Gene

ENSEMBL:
Gene Tree for HAO2-IT1 (if available)
TreeFam:
Gene Tree for HAO2-IT1 (if available)

No data available for Orthologs for HAO2-IT1 Gene

Paralogs for HAO2-IT1 Gene

No data available for Paralogs for HAO2-IT1 Gene

Variants for HAO2-IT1 Gene

Sequence variations from dbSNP and Humsavar for HAO2-IT1 Gene

SNP ID Clin Chr 01 pos Variation AA Info Type
rs1000273054 -- 119,370,724(+) A/G downstream_transcript_variant
rs1002718190 -- 119,369,219(+) C/A intron_variant
rs1003508832 -- 119,370,605(+) G/A downstream_transcript_variant
rs1005822326 -- 119,370,323(+) T/C non_coding_transcript_variant
rs1006128573 -- 119,370,051(+) G/A intron_variant

Structural Variations from Database of Genomic Variants (DGV) for HAO2-IT1 Gene

Variant ID Type Subtype PubMed ID
esv2761649 CNV gain 21179565
esv34089 CNV loss 18971310
nsv1004662 CNV gain 25217958
nsv524681 CNV gain 19592680

Additional Variant Information for HAO2-IT1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
HAO2-IT1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for HAO2-IT1 Gene

Disorders for HAO2-IT1 Gene

Additional Disease Information for HAO2-IT1

No disorders were found for HAO2-IT1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for HAO2-IT1 Gene

Publications for HAO2-IT1 Gene

No publications were found for HAO2-IT1 Gene.

Products for HAO2-IT1 Gene

Sources for HAO2-IT1 Gene

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