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Aliases for HAGLR Gene

Subcategory (RNA class) for HAGLR Gene

non-coding RNA

Quality Score for this RNA gene is

3

Aliases for HAGLR Gene

  • HOXD Antisense Growth-Associated Long Non-Coding RNA 2 3 5
  • HOXD Cluster Antisense RNA 1 (Non-Protein Coding) 2 3
  • HOXD Cluster Antisense RNA 1 2
  • HOXD-AS1 3
  • Mdgt 3

External Ids for HAGLR Gene

Previous HGNC Symbols for HAGLR Gene

  • HOXD-AS1

Summaries for HAGLR Gene

GeneCards Summary for HAGLR Gene

HAGLR (HOXD Antisense Growth-Associated Long Non-Coding RNA) is an RNA Gene, and is affiliated with the non-coding RNA class.

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for HAGLR Gene

Genomics for HAGLR Gene

Regulatory Elements for HAGLR Gene

Enhancers for HAGLR Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH02G176128 1.6 Ensembl ENCODE dbSUPER 20.7 +54.2 54169 13.3 HDGF PKNOX1 FOXA2 CREB3L1 ARID4B SIN3A FEZF1 DMAP1 ZNF2 ZBTB7B HOXD1 HAGLR HAGLROS HOXD4 HOXD11 ENSG00000272729 HOXD8 HOXD9 HOXD-AS2 HOXD3
GH02G176159 0.8 ENCODE 27.3 +27.7 27745 3.0 ELF3 CTCF SUZ12 FEZF1 ZIC2 ZFHX2 EZH2 EGR2 RNF2 MTA2 HAGLROS HAGLR HOXD1 HOXD-AS2 HOXD9 HOXD3 HOXD8 HOXD10 HOXD11 HOXD13
GH02G176177 1.1 Ensembl ENCODE 15 +10.5 10541 2.2 PKNOX1 FEZF1 GLIS2 ZNF366 FOS EGR2 SP3 ZNF114 ZNF579 PRDM6 HAGLROS HAGLR HOXD1 HOXD4 HOXD3 HOXD-AS2 MIR10B HOXD11 HOXD12 HOXD10
GH02G176552 1.5 FANTOM5 Ensembl ENCODE 10.2 -364.7 -364733 3.0 ARNT FEZF1 ZNF2 ZBTB7B YY1 ZNF143 REST ZNF592 ATF4 SMARCA4 HOXD4 HOXD3 HOXD-AS2 MIR10B HOXD1 HAGLR HOXD13 ENSG00000236231 GC02P176590
GH02G176489 1.2 Ensembl ENCODE 10.9 -302.0 -302042 2.5 PKNOX1 FOXA2 SIN3A FEZF1 TCF12 FOS JUNB TBX21 SMARCA4 GLIS1 HAGLR HOXD1 HOXD3 ENSG00000229434 ENSG00000237260
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around HAGLR on UCSC Golden Path with GeneCards custom track

Genomic Location for HAGLR Gene

Chromosome:
2
Start:
176,173,189 bp from pter
End:
176,188,958 bp from pter
Size:
15,770 bases
Orientation:
Minus strand

Genomic View for HAGLR Gene

Genes around HAGLR on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
HAGLR Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for HAGLR Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for HAGLR Gene

Proteins for HAGLR Gene

Post-translational modifications for HAGLR Gene

No Post-translational modifications

No data available for DME Specific Peptides for HAGLR Gene

Domains & Families for HAGLR Gene

Gene Families for HAGLR Gene

Graphical View of Domain Structure for InterPro Entry

genes like me logo Genes that share domains with HAGLR: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for HAGLR Gene

Function for HAGLR Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for HAGLR Gene

Localization for HAGLR Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for HAGLR Gene

Pathways & Interactions for HAGLR Gene

SuperPathways for HAGLR Gene

No Data Available

Interacting Proteins for HAGLR Gene

Gene Ontology (GO) - Biological Process for HAGLR Gene

None

No data available for Pathways by source and SIGNOR curated interactions for HAGLR Gene

Transcripts for HAGLR Gene

mRNA/cDNA for HAGLR Gene

(12) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for HAGLR Gene

No ASD Table

Relevant External Links for HAGLR Gene

GeneLoc Exon Structure for
HAGLR
ECgene alternative splicing isoforms for
HAGLR

Expression for HAGLR Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for HAGLR Gene

NURSA nuclear receptor signaling pathways regulating expression of HAGLR Gene:

HAGLR
genes like me logo Genes that share expression patterns with HAGLR: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for HAGLR Gene

Orthologs for HAGLR Gene

Evolution for HAGLR Gene

ENSEMBL:
Gene Tree for HAGLR (if available)
TreeFam:
Gene Tree for HAGLR (if available)

No data available for Orthologs for HAGLR Gene

Paralogs for HAGLR Gene

No data available for Paralogs for HAGLR Gene

Variants for HAGLR Gene

Sequence variations from dbSNP and Humsavar for HAGLR Gene

SNP ID Clin Chr 02 pos Sequence Context AA Info Type
rs1000498648 -- 176,183,382(+) GGTAA(A/G)GAAGT intron-variant
rs1000552241 -- 176,182,995(+) AAGGT(A/G)GTTCC intron-variant
rs1000929407 -- 176,176,214(+) CCGAG(A/G)CTCAC nc-transcript-variant, upstream-variant-2KB
rs1000981774 -- 176,176,419(+) TTCAT(C/T)AGGGA nc-transcript-variant, upstream-variant-2KB
rs1001145882 -- 176,177,161(+) GGACG(A/G)TGAAT intron-variant, upstream-variant-2KB

Structural Variations from Database of Genomic Variants (DGV) for HAGLR Gene

Variant ID Type Subtype PubMed ID
dgv676n67 CNV gain 20364138
nsv1001933 CNV gain 25217958

Relevant External Links for HAGLR Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
HAGLR

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for HAGLR Gene

Disorders for HAGLR Gene

Relevant External Links for HAGLR

Atlas of Genetics and Cytogenetics in Oncology and Haematology:
HAGLR

No disorders were found for HAGLR Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for HAGLR Gene

Publications for HAGLR Gene

  1. Role of genomic architecture in the expression dynamics of long noncoding RNAs during differentiation of human neuroblastoma cells. (PMID: 24555823) Batagov A.O. … Kurochkin I.V. (BMC Syst Biol 2013) 2 3 64
  2. Multiple knockout mouse models reveal lincRNAs are required for life and brain development. (PMID: 24381249) Sauvageau M. … Rinn J.L. (Elife 2013) 2 3 64
  3. HOXD-AS1 is a novel lncRNA encoded in HOXD cluster and a marker of neuroblastoma progression revealed via integrative analysis of noncoding transcriptome. (PMID: 25522241) Yarmishyn A.A. … Kurochkin I.V. (BMC Genomics 2014) 3 64
  4. GWAS meta-analysis and replication identifies three new susceptibility loci for ovarian cancer. (PMID: 23535730) Pharoah P.D. … Sellers T.A. (Nat. Genet. 2013) 3 64
  5. A genome-wide association study identifies susceptibility loci for ovarian cancer at 2q31 and 8q24. (PMID: 20852632) Goode E.L. … Pharoah P.D. (Nat. Genet. 2010) 3 64

Products for HAGLR Gene

Sources for HAGLR Gene

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