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Aliases for HAGLR Gene

Subcategory (RNA class) for HAGLR Gene

non-coding RNA

Quality Score for this RNA gene is


Aliases for HAGLR Gene

  • HOXD Antisense Growth-Associated Long Non-Coding RNA 2 3
  • HOXD Cluster Antisense RNA 1 (Non-Protein Coding) 2 3
  • HOXD Cluster Antisense RNA 1 2
  • HOXD-AS1 3
  • Mdgt 3

External Ids for HAGLR Gene

Previous HGNC Symbols for HAGLR Gene

  • HOXD-AS1

Summaries for HAGLR Gene

GeneCards Summary for HAGLR Gene

HAGLR (HOXD Antisense Growth-Associated Long Non-Coding RNA) is an RNA Gene, and is affiliated with the non-coding RNA class.

No data available for Entrez Gene Summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for HAGLR Gene

Genomics for HAGLR Gene

Genomic Location for HAGLR Gene

176,173,195 bp from pter
176,188,958 bp from pter
15,764 bases
Minus strand

Genomic View for HAGLR Gene

UCSC Golden Path with GeneCards custom track
Cytogenetic band:
Genomic Location for HAGLR Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for HAGLR Gene

No data available for Regulatory Elements for HAGLR Gene

Proteins for HAGLR Gene

Post-translational modifications for HAGLR Gene

No Post-translational modifications

No data available for DME Specific Peptides for HAGLR Gene

Domains for HAGLR Gene

Gene Families for HAGLR Gene

Graphical View of Domain Structure for InterPro Entry

genes like me logo Genes that share domains with HAGLR: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for HAGLR Gene

Function for HAGLR Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for HAGLR Gene

Localization for HAGLR Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for HAGLR Gene

Pathways for HAGLR Gene

SuperPathways for HAGLR Gene

No Data Available

Interacting Proteins for HAGLR Gene

Gene Ontology (GO) - Biological Process for HAGLR Gene


No data available for Pathways by source for HAGLR Gene

Transcripts for HAGLR Gene

mRNA/cDNA for HAGLR Gene

(13) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for HAGLR Gene

No ASD Table

Relevant External Links for HAGLR Gene

GeneLoc Exon Structure for
ECgene alternative splicing isoforms for

Expression for HAGLR Gene

mRNA expression in normal human tissues for HAGLR Gene

genes like me logo Genes that share expressions with HAGLR: view

Primer Products

In Situ Assay Products

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , mRNA Expression by UniProt/SwissProt and Expression partners for HAGLR Gene

Orthologs for HAGLR Gene

Evolution for HAGLR Gene

Gene Tree for HAGLR (if available)
Gene Tree for HAGLR (if available)

No data available for Orthologs for HAGLR Gene

Paralogs for HAGLR Gene

No data available for Paralogs for HAGLR Gene

Variants for HAGLR Gene

Sequence variations from dbSNP and Humsavar for HAGLR Gene

SNP ID Clin Chr 02 pos Sequence Context AA Info Type MAF
rs1475970 -- 176,174,281(+) GAATT(C/T)CTAAT nc-transcript-variant
rs13413322 -- 176,175,928(+) GGAAG(C/T)GGCAG nc-transcript-variant
rs35563571 -- 176,179,731(+) TCTAA(G/T)AAAAA intron-variant, upstream-variant-2KB
rs58189787 -- 176,181,849(+) ACACA(-/CA)TATAT intron-variant
rs72916126 -- 176,184,015(+) ACAAT(A/C)TAAAG intron-variant

Relevant External Links for HAGLR Gene

HapMap Linkage Disequilibrium report

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Structural Variations from Database of Genomic Variants (DGV) for HAGLR Gene

Disorders for HAGLR Gene

No disorders were found for HAGLR Gene.

No data available for MalaCards , OMIM , UniProtKB/Swiss-Prot , University of Copenhagen DISEASES , Novoseek inferred disease relationships , Genatlas and External Links for HAGLR Gene

Publications for HAGLR Gene

  1. Multiple knockout mouse models reveal lincRNAs are required for life and brain development. (PMID: 24381249) Sauvageau M. … Rinn J.L. (Elife 2013) 2 3
  2. Role of genomic architecture in the expression dynamics of long noncoding RNAs during differentiation of human neuroblastoma cells. (PMID: 24555823) Batagov A.O. … Kurochkin I.V. (BMC Syst Biol 2013) 2 3
  3. GWAS meta-analysis and replication identifies three new susceptibility loci for ovarian cancer. (PMID: 23535730) Pharoah P.D. … Sellers T.A. (Nat. Genet. 2013) 3
  4. HOXD-AS1 is a novel lncRNA encoded in HOXD cluster and a marker of neuroblastoma progression revealed via integrative analysis of noncoding transcriptome. (PMID: 25522241) Yarmishyn A.A. … Kurochkin I.V. (BMC Genomics 2014) 3
  5. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg R.L. … Marra M.A. (Proc. Natl. Acad. Sci. U.S.A. 2002) 3

Products for HAGLR Gene

Sources for HAGLR Gene

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