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Aliases for HAGLR Gene

Subcategory (RNA class) for HAGLR Gene

non-coding RNA

Quality Score for this RNA gene is

3

Aliases for HAGLR Gene

  • HOXD Antisense Growth-Associated Long Non-Coding RNA 2 3 5
  • HOXD Cluster Antisense RNA 1 (Non-Protein Coding) 2 3
  • HOXD Cluster Antisense RNA 1 2
  • HOXD-AS1 3
  • Mdgt 3

External Ids for HAGLR Gene

Previous HGNC Symbols for HAGLR Gene

  • HOXD-AS1

Summaries for HAGLR Gene

GeneCards Summary for HAGLR Gene

HAGLR (HOXD Antisense Growth-Associated Long Non-Coding RNA) is an RNA Gene, and is affiliated with the non-coding RNA class.

No data available for Entrez Gene Summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for HAGLR Gene

Genomics for HAGLR Gene

Regulatory Elements for HAGLR Gene

Enhancers for HAGLR Gene
GeneHancer Identifier Score Enhancer Sources TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Other Gene Targets for Enhancer

Enhancers around HAGLR on UCSC Golden Path with GeneCards custom track

Genomic Location for HAGLR Gene

Chromosome:
2
Start:
176,173,189 bp from pter
End:
176,188,958 bp from pter
Size:
15,770 bases
Orientation:
Minus strand

Genomic View for HAGLR Gene

Genes around HAGLR on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
HAGLR Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for HAGLR Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for HAGLR Gene

Proteins for HAGLR Gene

Post-translational modifications for HAGLR Gene

No Post-translational modifications

No data available for DME Specific Peptides for HAGLR Gene

Domains & Families for HAGLR Gene

Gene Families for HAGLR Gene

Graphical View of Domain Structure for InterPro Entry

genes like me logo Genes that share domains with HAGLR: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for HAGLR Gene

Function for HAGLR Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for HAGLR Gene

Localization for HAGLR Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for HAGLR Gene

Pathways & Interactions for HAGLR Gene

SuperPathways for HAGLR Gene

No Data Available

Interacting Proteins for HAGLR Gene

Gene Ontology (GO) - Biological Process for HAGLR Gene

None

No data available for Pathways by source and SIGNOR curated interactions for HAGLR Gene

Drugs & Compounds for HAGLR Gene

No Compound Related Data Available

Transcripts for HAGLR Gene

mRNA/cDNA for HAGLR Gene

(12) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for HAGLR Gene

No ASD Table

Relevant External Links for HAGLR Gene

GeneLoc Exon Structure for
HAGLR
ECgene alternative splicing isoforms for
HAGLR

Expression for HAGLR Gene

mRNA expression in normal human tissues for HAGLR Gene

genes like me logo Genes that share expression patterns with HAGLR: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , mRNA Expression by UniProt/SwissProt and Protein tissue co-expression partners for HAGLR Gene

Orthologs for HAGLR Gene

Evolution for HAGLR Gene

ENSEMBL:
Gene Tree for HAGLR (if available)
TreeFam:
Gene Tree for HAGLR (if available)

No data available for Orthologs for HAGLR Gene

Paralogs for HAGLR Gene

No data available for Paralogs for HAGLR Gene

Variants for HAGLR Gene

Sequence variations from dbSNP and Humsavar for HAGLR Gene

SNP ID Clin Chr 02 pos Sequence Context AA Info Type
rs1549334 -- 176,174,469(-) CATTA(C/T)GTATT nc-transcript-variant
rs1562314 -- 176,180,832(-) TATTT(A/T)AAAAA intron-variant
rs1562315 -- 176,180,754(-) ACATT(A/T)CTGCA intron-variant
rs1124052 -- 176,175,356(-) CTTTG(C/T)CCTCC nc-transcript-variant
rs6752493 -- 176,181,147(+) gcaaa(A/G)gtgtg intron-variant

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Structural Variations from Database of Genomic Variants (DGV) , Variation tolerance and Relevant External Links for HAGLR Gene

Disorders for HAGLR Gene

Relevant External Links for HAGLR

Atlas of Genetics and Cytogenetics in Oncology and Haematology:
HAGLR

No disorders were found for HAGLR Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for HAGLR Gene

Publications for HAGLR Gene

  1. Role of genomic architecture in the expression dynamics of long noncoding RNAs during differentiation of human neuroblastoma cells. (PMID: 24555823) Batagov A.O. … Kurochkin I.V. (BMC Syst Biol 2013) 2 3 67
  2. Multiple knockout mouse models reveal lincRNAs are required for life and brain development. (PMID: 24381249) Sauvageau M. … Rinn J.L. (Elife 2013) 2 3
  3. HOXD-AS1 is a novel lncRNA encoded in HOXD cluster and a marker of neuroblastoma progression revealed via integrative analysis of noncoding transcriptome. (PMID: 25522241) Yarmishyn A.A. … Kurochkin I.V. (BMC Genomics 2014) 3
  4. GWAS meta-analysis and replication identifies three new susceptibility loci for ovarian cancer. (PMID: 23535730) Pharoah P.D. … Sellers T.A. (Nat. Genet. 2013) 3
  5. A genome-wide association study identifies susceptibility loci for ovarian cancer at 2q31 and 8q24. (PMID: 20852632) Goode E.L. … Pharoah P.D. (Nat. Genet. 2010) 3

Products for HAGLR Gene

Sources for HAGLR Gene

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