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Aliases for HAGLR Gene

Subcategory (RNA class) for HAGLR Gene

non-coding RNA

Quality Score for this RNA gene is

3

Aliases for HAGLR Gene

  • HOXD Antisense Growth-Associated Long Non-Coding RNA 2 3
  • HOXD Cluster Antisense RNA 1 (Non-Protein Coding) 2 3
  • HOXD Cluster Antisense RNA 1 2
  • HOXD-AS1 3
  • Mdgt 3

External Ids for HAGLR Gene

Previous Symbols for HAGLR Gene

  • HOXD-AS1

Summaries for HAGLR Gene

GeneCards Summary for HAGLR Gene

HAGLR (HOXD Antisense Growth-Associated Long Non-Coding RNA) is a RNA Gene, and belongs to non-coding RNA RNA class.

No data available for Entrez Gene Summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for HAGLR Gene

Genomics for HAGLR Gene

Genomic Location for HAGLR Gene

Start:
176,173,195 bp from pter
End:
176,188,958 bp from pter
Size:
15,764 bases
Orientation:
Minus strand

Genomic View for HAGLR Gene

UCSC Golden Path with GeneCards custom track
Cytogenetic band:
Genomic Location for HAGLR Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for HAGLR Gene

No data available for Regulatory Elements for HAGLR Gene

Proteins for HAGLR Gene

Post-translational modifications for HAGLR Gene

No Post-translational modifications

No data available for DME Specific Peptides for HAGLR Gene

Domains for HAGLR Gene

No data available for Gene Families , Protein Domains and UniProtKB/Swiss-Prot for HAGLR Gene

Function for HAGLR Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Animal Models , miRNA , Transcription Factor Targeting and HOMER Transcription for HAGLR Gene

Localization for HAGLR Gene

No data available for Gene Ontology (GO) - Cellular Components for HAGLR Gene

Pathways for HAGLR Gene

SuperPathways for HAGLR Gene

No Data Available

Interacting Proteins for HAGLR Gene

Gene Ontology (GO) - Biological Process for HAGLR Gene

None

No data available for Pathways by source for HAGLR Gene

Transcripts for HAGLR Gene

mRNA/cDNA for HAGLR Gene

(13) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for HAGLR Gene

No ASD Table

Relevant External Links for HAGLR Gene

GeneLoc Exon Structure for
HAGLR
ECgene alternative splicing isoforms for
HAGLR

Expression for HAGLR Gene

mRNA expression in normal human tissues for HAGLR Gene

genes like me logo Genes that share expressions with HAGLR: view

Orthologs for HAGLR Gene

Evolution for HAGLR Gene

ENSEMBL:
Gene Tree for HAGLR (if available)
TreeFam:
Gene Tree for HAGLR (if available)

No data available for Orthologs for HAGLR Gene

Paralogs for HAGLR Gene

No data available for Paralogs for HAGLR Gene

Variants for HAGLR Gene

Sequence variations from dbSNP and Humsavar for HAGLR Gene

SNP ID Clin Chr 02 pos Sequence Context AA Info Type MAF
rs1124052 -- 176,175,356(-) CTTTG(C/T)CCTCC nc-transcript-variant
rs1446575 -- 176,183,073(-) AGCTA(A/C)ATCAA intron-variant
rs1475969 -- 176,174,122(+) GAGGG(C/G)ATATC nc-transcript-variant
rs1475970 -- 176,174,281(+) GAATT(C/T)CTAAT nc-transcript-variant
rs1549334 -- 176,174,469(-) CATTA(C/T)GTATT nc-transcript-variant

Relevant External Links for HAGLR Gene

HapMap Linkage Disequilibrium report
HAGLR

No data available for Structural Variations from Database of Genomic Variants (DGV) for HAGLR Gene

Disorders for HAGLR Gene

No disorders were found for HAGLR Gene.

No data available for UniProtKB/Swiss-Prot for HAGLR Gene

Publications for HAGLR Gene

  1. Multiple knockout mouse models reveal lincRNAs are required for life and brain development. (PMID: 24381249) Sauvageau M. … Rinn J.L. (Elife 2013) 2 3
  2. Role of genomic architecture in the expression dynamics of long noncoding RNAs during differentiation of human neuroblastoma cells. (PMID: 24555823) Batagov A.O. … Kurochkin I.V. (BMC Syst Biol 2013) 2 3
  3. HOXD-AS1 is a novel lncRNA encoded in HOXD cluster and a marker of neuroblastoma progression revealed via integrative analysis of noncoding transcriptome. (PMID: 25522241) Yarmishyn A.A. … Kurochkin I.V. (BMC Genomics 2014) 3
  4. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg R.L. … Marra M.A. (Proc. Natl. Acad. Sci. U.S.A. 2002) 3
  5. Identification of intrahepatic cholangiocarcinoma related genes by comparison with normal liver tissues using expressed sequence tags. (PMID: 16712791) Wang A.G. … Kim N.S. (Biochem. Biophys. Res. Commun. 2006) 3

Products for HAGLR Gene

Sources for HAGLR Gene

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