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Aliases & Descriptions for HADHB
(According to
1 HGNC ,
2 Entrez Gene ,
3 UniProtKB/Swiss-Prot ,
4 UniProtKB/TrEMBL , 5 OMIM , 6 GeneLoc
, and/or 7 Ensembl ,
8 miRBase )About This Section
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Aliases ECHB 2 MGC87480 2 MSTP029 2 TP-BETA 2 TP-beta 3 beta-ketothiolase 2
Descriptions 2-enoyl-Coenzyme A (CoA) hydratase, beta subunit 2 3-ketoacyl-Coenzyme A (CoA) thiolase of mitochondrial trifunctional protein, beta subunit 2 acetyl-CoA acyltransferase 2 hydroxyacyl-Coenzyme A (CoA) dehydrogenase, beta subunit 2 hydroxyacyl-Coenzyme A dehydrogenase/3-ketoacyl-Coenzyme A thiolase/enoyl-Coenzyme A hydratase (trifunctional protein), beta subunit 2 mitochondrial trifunctional enzyme, beta subunit 2 mitochondrial trifunctional protein, beta subunit 2
Search outside databases for aliases for HADHB genePrevious GC identifers: GC02P026389 GC02P026560 GC02P026442
Summaries for HADHB (According to Entrez Gene ,
Wikipedia's
Gene Wiki ,
UniProtKB/Swiss-Prot ,
and/or
UniProtKB/TrEMBL )
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EntrezGene summary for HADHB : This gene encodes the beta subunit of the mitochondrial trifunctional protein, which catalyzes thelast three steps of mitochondrial beta-oxidation of long chain fatty acids. The mitochondrialmembrane-bound heterocomplex is composed of four alpha and four beta subunits, with the betasubunit catalyzing the 3-ketoacyl-CoA thiolase activity. Mutations in this gene result intrifunctional protein deficiency. The encoded protein can also bind RNA and decreases thestability of some mRNAs. The genes of the alpha and beta subunits of the mitochondrialtrifunctional protein are located adjacent to each other in the human genome in a head-to-headorientation. Alternatively spliced transcript variants have been found; however, their full-lengthnature is not known. [provided by RefSeq]
Genomic Location for HADHB
(According to
GeneLoc and/or
HGNC , and/or
Entrez Gene (NCBI build 36) ,
and/or miRBase ,
Genomic Views according to
UCSC and
Ensembl ,
Transcription factor binding sites according to
SABiosciences )About This Section
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Genomic View : UCSC Golden Path with GeneCards custom track Transcription factor binding sites upstream to the HADHB gene Entrez Gene cytogenetic band: 2p23 Ensembl cytogenetic band: 2p23.3 HGNC cytogenetic band: 2p23 HADHB Gene in genomic location: bands according to Ensembl, locations according to
(and/or Entrez Gene and/or Ensembl if different) GeneLoc gene densities for chromosome 2 GeneLoc Exon Structure
GeneLoc location for GC02P026379:
(about GC identifiers )
Start:
26,321,120 bp from pter
End:
26,366,837 bp from pter
Size:
45,718 bases
Orientation:
plus strand
RefSeq DNA sequence: NC_000002.10 NT_022184.14 Proteins for HADHB
(According to
1 UniProtKB ,
and/or Ensembl ,
Phosphorylation sites according to 2 Phosphosite ,
RefSeq according to NCBI ,
PDB rendering according to OCA and/or Proteopedia ,
Recombinant Proteins
from Invitrogen ,
Millipore ,
Sigma-Aldrich ,
R&D Systems ,
Enzo Life Sciences ,
Abnova ,
OriGene and/or,
Abcam ,
Biochemical Assays by
Invitrogen ,
Millipore ,
R&D Systems ,
Cell Signaling Technology , and/or
Enzo Life Sciences ,
Ontologies according to Gene
Ontology Consortium 01 Apr 2009 and
Entrez Gene ,
Antibodies by Invitrogen ,
Millipore ,
Sigma-Aldrich ,
R&D Systems ,
Cell Signaling Technology ,
Abcam ,
Abnova , and/or
Novus Biologicals )
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UniProtKB/Swiss-Prot: ECHB_HUMAN, P55084 (See
protein sequence )Recommended Name: Trifunctional enzyme subunit beta, mitochondrial precursor Size : 474 amino acids; 51294 Da
Subunit : Octamer of 4 alpha (HADHA) and 4 beta (HADHB) subunits
Subcellular location : Mitochondrion
Sequence caution : Sequence=BAA22061.1; Type=Erroneous gene model prediction;
Secondary accessions : B2RB16 O14969 Q53TA6 Q96C77 Q9H3F5 Q9T2V8
Post-translational modifications:
View phosphorylation sites using PhosphoSite 2
REFSEQ proteins: NP_000174.1 ENSEMBL proteins: ENSP00000385411 ENSP00000325136 Human Recombinant Proteins Browse Origene for full length recombinant human proteins expressed in human HEK293 cells 4 Gene Ontology (GO) cellular component terms (links to tree view) :
About this table Antibodies for HADHB: Assays for HADHB:
Protein
Domains/ Families for HADHB(According to InterPro , ProtoNet ,
UniProtKB , and/or BLOCKS ,
Sets of similar genes according to GeneDecks )
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Graphical View of Domain Structure for InterPro Entry P55084 ProtoNet protein and cluster: P55084
2 Blocks protein families : IPB000408 Regulator of chromosome condensation IPB002155 Thiolase UniProtKB/Swiss-Prot: ECHB_HUMAN, P55084 Similarity : Belongs to the thiolase family
Gene Function for HADHB
(According to MGI Jun 06 2009, UniProtKB ,
IUBMB ,and/or Genatlas ,
shRNA from
OriGene ,
Sigma-Aldrich , RNAi from
Sigma-Aldrich ,
RNAi Products ,
Clones , and
Q-PCR Products
from Invitrogen ,
Millipore ,
OriGene , and/or
Abnova ,
siRNAs from
Applied Biosystems ,
SYBR primers from OriGene ,
Cell-based Assays from Millipore ,
Ontologies according to Gene Ontology Consortium 01 Apr 2009 via
Entrez Gene .)
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              OriGene 29mer shRNA kit in GFP-retroviral vector: NM_000183 Applied Biosystems Silencer ® siRNAs for HADHB Sigma-Aldrich siRNA and siRNA Panels for HADHB Sigma-Aldrich shRNA for HADHB Explore Sigma-Aldrich super-pooled esiRNAs               OriGene GFP tagged cDNA clone in CMV expression vector: NM_000183                                  Myc/DDK tagged cDNA clone in CMV expression vector: NM_000183                                  untagged cDNA clones in CMV expression vector (see all 2 ): NM_000183  Primers: Browse
Quantitative PCR Central at Invitrogen for Q-PCR LUX™ Primers               OriGene genome-wide validated SYBR primer pairs: NM_000183 UniProtKB/Swiss-Prot: ECHB_HUMAN, P55084 Catalytic activity : Acyl-CoA + acetyl-CoA = CoA + 3-oxoacyl-CoA
Genatlas biochemistry entry for HADHB :mitochondrial,membrane bound fatty acid beta-oxidation trifunctional enzyme,beta subunit,harboringthe long chain 3-oxoacyl-CoA thiolase
7 MGI mutant phenotypes (inferred from 1 allele ) (MGI details for Hadhb) :5 Gene Ontology (GO) molecular function terms (links to tree view) :
About this table
Pathways & Interactions for HADHB
(Pathways according to Invitrogen
(maps by GeneGo ),
Millipore ,
Cell Signaling Technology ,
Sigma-Aldrich ,
KEGG
and/or UniProtKB ,
Sets of similar genes according to GeneDecks ,
Proteins Network according to
SABiosciences ,
Interactions according to 1 UniProtKB ,
2 MINT , and/or
3 STRING ,
with links to IntAct and
Ensembl ,
Ontologies according to Gene Ontology Consortium 01 Apr 2009 via
Entrez Gene .)
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5/11 Sigma-Aldrich "Your Favorite Gene" Pathways for HADHB (Your Favorite Gene powered by Ingenuity) (see all 11
) UniProtKB/Swiss-Prot: ECHB_HUMAN, P55084 Pathway : Lipid metabolism; fatty acid beta-oxidation
Gene Network CentralTM Interacting Genes and Proteins Network for HADHB 3 Interacting proteins for HADHB (P55084 2 ) via UniProtKB, MINT, and/or STRING About this table 4 Gene Ontology (GO) biological process terms (links to tree view) :
About this table
Drugs & Compounds for HADHB (Chemical Compounds according to UniProtKB , Enzo Life Sciences ,
Sigma-Aldrich , Tocris Bioscience , and/or
Novoseek and Drugs according to
Enzo Life Sciences and/or
PharmGKB )
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Browse Tocris compounds for HADHB 10/19 Novoseek chemical compound relationships for HADHB gene (see all 19
)
Compound
Score
Articles
PubMed IDs for Articles with Shared Sentences (# sentences)
3-ketopalmitoyl-coa
90.98
1
11356167 (1)
i-bop
87.16
3
11055976 (3)
thromboxane a2
83.57
24
17630727 (2), 11901221 (2), 15134434 (2), 10827090 (1) (see all 19 )
acyl-coa
79.56
20
9857175 (2), 1586963 (1), 7822275 (1), 16428307 (1) (see all 17 )
lignoceric acid
78.10
2
1680308 (1)
thromboxane
73.81
15
16499875 (1), 12726995 (1), 16156795 (1), 18502100 (1) (see all 6 )
acetoacetyl coa
64.81
2
18958860 (1), 7748356 (1)
fatty acid
64.21
13
2181395 (1), 1331693 (1), 9605857 (1), 18690865 (1) (see all 13 )
acetyl-coa
47.69
3
11988101 (2), 18958860 (1)
sterol
40.93
4
11734571 (1), 15060085 (1), 17343205 (1)
About this table
Transcripts for HADHB(GenBank/EMBL/DDBJ Accessions according to
Unigene
(Build 219 Homo sapiens; Jun 2 2009) or GenBank , RefSeq according to Entrez Gene ,
DOTS (version 10), and/or
AceView ,
non coding RNAs according to
RNAdb ,
ESTs according to GeneTide ,
exon structure from GeneLoc ,
alternative splicing isoforms according to ASD and/or
ECgene ,
RNAi Products from Invitrogen ,
Millipore , and/or
Abnova ,
siRNAs from Applied Biosystems ,
Sigma-Aldrich ,
shRNA from
Sigma-Aldrich ,
OriGene ,
Tagged/untagged cDNA clones from
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              OriGene 29mer shRNA kit in GFP-retroviral vector: NM_000183 Sigma-Aldrich siRNA and siRNA Panels for HADHB Sigma-Aldrich shRNA for HADHB Explore Sigma-Aldrich super-pooled esiRNAs
Applied Biosystems Silencer ® siRNAs: NM_000183
REFSEQ mRNAs for HADHB gene: NM_000183.2
Applied Biosystems TaqMan ® Gene Expression Assays: NM_000183
              OriGene GFP tagged cDNA clone in CMV expression vector: NM_000183                                  Myc/DDK tagged cDNA clone in CMV expression vector: NM_000183                                  untagged cDNA clones in CMV expression vector (see all 2 ): NM_000183  
Additional cDNA sequence: AF113209.1 AK095278.1 AK130072.1 AK293142.1 AK302322.1 AK304455.1 AK314455.1 BC014572.1 BC017564.2 BC030824.1 BC066963.1 CR596000.1 CR596672.1 CR597780.1 CR598353.1 CR599982.1 CR608278.1 CR609244.1 CR626668.1 D16481.1
24/38 DOTS entries (see all 38
): DT.101972334 DT.449472 DT.100877767 DT.120987071 DT.95353863 DT.95353875 DT.100877775 DT.120986800 DT.120986743 DT.97859955 DT.91765288 DT.95229045 DT.100877752 DT.120986801 DT.120986823 DT.120987088 DT.120987097 DT.120987083 DT.120987095 DT.86854232 DT.40116689 DT.422212 DT.100736320 DT.91765294
24/181 AceView cDNA sequences (see all 181
):CR608278 AL545228 D16481 CR596000 CB160660 CR596672 BM759489 BP340775 BX439508 AL557905 BU172467 AL531195 AL531387 BP377978 CB128235 BM473014 AU136373 AU140049 CR609244 CR598353 AI039905 AL583577 AU107199 BP379456
highest scoring ESTs for HADHB :AI150369 D16481 AA001261 AA002265 AA025469 AA026813 AA036645 AA040188 AA041355 AA043493
Unigene Cluster for HADHB: Hydroxyacyl-Coenzyme A dehydrogenase/3-ketoacyl-Coenzyme A thiolase/enoyl-Coenzyme A hydratase (trifunctional protein), beta subunit Hs.515848 [show with all ESTs ] Unigene Representative Sequence: AK095278 GeneLoc Exon Structure 5/8 Alternative Splicing Database (ASD) splice patterns (SP) for HADHB (see all 8
) ExUns: 1a · 1b · 1c ^ 2 ^ 3a · 3b ^ 4 ^ 5 ^ 6 ^ 7 ^ 8 ^ 9 ^ 10a · 10b ^ 11 ^ 12 ^ 13 ^ 14 ^ 15 ^ 16a · 16b ^ 17a · 17b SP1 :         -     -                                   SP2 :             -                                   SP3 :                                               SP4 :       -   -   -   -                                   SP5 :         -     -       -   -                          
About this scheme ECgene alternative splicing isoforms for HADHB 2 Ensembl transcripts including schematic representations : ENST00000405867
ENST00000317799
Expression for HADHB
(Experimental results according to
1 GeneNote
and GNF BioGPS ,
probe sets-to-genes annotations according to
2 GeneAnnot ,
3 GeneTide ,
Sets of similar genes according to GeneDecks ,
Electronic Northern calculations according to data from
UniGene (Build 219 Homo sapiens),
SAGE tags according to
CGAP ,
plus additional links to
SOURCE , and/or
GNF
BioGPS , and/or
EXPOLDB , and/or
UniProtKB ,
Expression Assays from
Applied Biosystems
)
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HADHB expression in normal and diseased human tissues Applied Biosystems TaqMan ® Gene Expression Assays for HADHB 1 / 2 / 3
4 probe-sets matching HADHB gene Data from
(Publications) and GNF BioGPS About these images About these images CGAP SAGE TAG: AGATGTGTGGSOURCE GeneReport for Unigene cluster: Hs.515848 Expression variation in blood from EXPOLDB for HADHB
Orthologs for HADHB
(Orthologs according to
1,2 HomoloGene (2 older version, for species not in 1 newer version),
3 euGenes ,
4 SGD
and/or
5 MGI Jun 06 2009,
with possible further links to
Flybase
and/or
WormBase ,
Gene Trees according to Ensembl )
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Orthologs for HADHB gene from 5/13 species (see all 13
)
About this table Species with no ortholog for HADHB ENSEMBL Gene Tree for HADHB Paralogs for HADHB (Paralogs according to 1 HomoloGene and 2 Ensembl , Pseudogenes according to 3 Pseudogene.org )About This Section
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Paralogs for HADHB gene ACAA1 2 Pseudogenes 1 related pseudogene
SNPs/Variants for HADHB (According to the
1 NCBI SNP Database ,
2 Ensembl ,
3 PupaSUITE , and
UniProtKB ,
Linkage Disequilibrium by HapMap ,
Genotyping Reagents from
Applied Biosystems )
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HapMap Linkage Disequilibrium images for HADHB (up to first 250kb)
Disorders & Mutations for HADHB
(in which this Gene is Involved, According to
OMIM, UniProtKB ,
Novoseek , PharmGKB ,
Genatlas , GeneTests ,
Blood group antigen gene mutations by BGMUT ,
HGMD, GAD ,
HuGE Navigator ,
BCGD ,
and/or TGDB .)
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OMIM: 143450 disorders : 609015 UniProtKB/Swiss-Prot: ECHB_HUMAN, P55084
Defects in HADHB are a cause of trifunctional protein deficiency (TFP deficiency)[MIM:609015]. The clinical manifestations are very variable and include hypoglycemia,cardiomyopathy and sudden death. Phenotypes with mainly hepatic and neuromyopathic involvement canalso be distinguished. Biochemically, TFP deficiency is defined by the loss of all three enzymeactivities of the TFP complex
10/11 Novoseek disease relationships for HADHB gene (see all 11
)
About this table Human Gene Mutation Database : HADHB
Medical News for HADHB (Possibly Related Articles in
Doctor's Guide )
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--
Publications for HADHB (in
PubMed .
Associations of this gene to articles via
1 Novoseek ,
2 HGNC ,
3 Entrez Gene ,
4 UniProtKB/Swiss-Prot ,
5 UniProtKB/TrEMBL ,
6 GAD , and/or
7 PharmGKB )
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10/128 PubMed articles for HADHB gene (see all 128
): Fluorescence in situ hybridization mapping of the alpha and beta subunits (HADHA and HADHB) of human mitochondrial fatty acid beta-oxidation multienzyme complex to 2p23 and their evolution. (PubMed id 9605857) 1, 2, 3 Aoyama T....Fukushima Y. (1997) Genomic and mutational analysis of the mitochondrial trifunctional protein beta-subunit (HADHB) gene in patients with trifunctional protein deficiency. (PubMed id 9259266) 1, 3, 4 Orii K.E.... Hashimoto T. (1997) Mitochondrial trifunctional protein deficiency. Catalytic heterogeneity of the mutant enzyme in two patients. (PubMed id 8163672) 1, 3, 4 Kamijo T....Hashimoto T. (1994) Molecular characterization of mitochondrial trifunctional protein deficiency: formation of the enzyme complex is important for stabilization of both alpha- and beta-subunits. (PubMed id 8651282) 1, 3, 4 Ushikubo S.... Hashimoto T. (1996) Generation and annotation of the DNA sequences of human chromosomes 2 and 4. (PubMed id 15815621) 3, 4 Hillier L.W....Wilson R.K. (2005) Complete sequencing and characterization of 21,243 full-length human cDNAs. (PubMed id 14702039) 3, 4 Ota T....Sugano S. (2004) Vectorial proteomics reveal targeting, phosphorylation and specific fragmentation of polymerase I and transcript release factor (PTRF) at the surface of caveolae in human adipocytes. (PubMed id 15242332) 3, 4 Aboulaich N.... Vener A.V. (2004) The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC). (PubMed id 15489334) 3, 4 Gerhard D.S....Malek J. (2004) Molecular and phenotypic heterogeneity in mitochondrial trifunctional protein deficiency due to beta-subunit mutations. (PubMed id 12754706) 3, 4 Spiekerkoetter U.... Strauss A.W. (2003) Exploring proteomes and analyzing protein processing by mass spectrometric identification of sorted N-terminal peptides. (PubMed id 12665801) 3, 4 Gevaert K.... Vandekerckhove J. (2003)
Search for HADHB
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Genome Databases showing HADHB
(According to
Entrez Gene ,
HGNC ,
AceView ,
euGenes ,
Ensembl ,
miRBase ,
ECgene ,
and/or
H-InvDB )
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Other Databases showing HADHB
(According to HUGE )
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Specialized Databases showing HADHB (According to ATLAS , HORDE , IMGT , MTDB, LEIDEN , UniProtKB/Swiss-Prot , and/or UniProtKB/TrEMBL ,Wikipedia and/or GeneReviews via UniProtKB/Swiss-Prot )About This Section
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Name Description
GeneReviews http://www.genetests.org/query?gene=HADHB
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-- Services for HADHB (Reagents available from Applied Biosystems , Antibodies and assays by Cell
Signaling Technology , Abcam , Novus Biologicals ,Sigma-Aldrich , R&D Systems , Millipore , Abnova , and/or Invitrogen , Clones available from OriGene ,and/or Invitrogen , Drugs and/or compounds by Sigma-Aldrich , Enzo Life Sciences , and/or Tocris Bioscience )About This Section
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Products for HADHB:
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