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Aliases & Descriptions for HACL1
(According to
1HGNC,
2Entrez Gene,
3UniProtKB/Swiss-Prot,
4UniProtKB/TrEMBL, 5OMIM, 6GeneLoc
, and/or 7Ensembl,
8miRBase) About This Section
|
| Aliases |
|---|
| 1600020H07Rik 2 | | 2-HPCL 1, 2, 3 | | EC 4.1.-.- 3 | | FLJ55041 2 | | HPCL 2, 3 | | HPCL2 2, 3 | | PHYH2 1, 2, 3 |
| | | Descriptions |
|---|
| 2-hydroxyacyl-CoA lyase 1 2 | | 2-hydroxyphytanol-CoA lyase 2 | | 2-hydroxyphytanoyl-CoA lyase 1, 2, 3 | | Phytanoyl-CoA 2-hydroxylase 2 2, 3 | | phytanoyl-CoA hydroxylase 2 2 |
|
| | Search outside databases for aliases for HACL1 gene |
Summaries for HACL1(According to Entrez Gene,
Wikipedia's
Gene Wiki,
UniProtKB/Swiss-Prot,
and/or
UniProtKB/TrEMBL)
About This Section
| UniProtKB/Swiss-Prot: HACL1_HUMAN, Q9UJ83Function: Catalyzes a carbon-carbon cleavage reaction; cleaves a 2-hydroxy-3-methylacyl-CoA into formyl-CoA and a 2-methyl-branched fatty aldehyde |
Genomic Location for HACL1
(According to
GeneLoc and/or
HGNC, and/or
Entrez Gene (NCBI build 36),
and/or miRBase,
Genomic Views according to
UCSC and
Ensembl,
Transcription factor binding sites according to
SABiosciences) About This Section
| Genomic View: UCSC Golden Path with GeneCards custom track
Transcription factor binding sites upstream to the HACL1 gene 
Entrez Gene cytogenetic band: 3p24.3 Ensembl cytogenetic band: 3p24.3 HGNC cytogenetic band: 3p24.3HACL1 Gene in genomic location: bands according to Ensembl, locations according to
(and/or Entrez Gene and/or Ensembl if different)
 GeneLoc gene densities for chromosome 3 GeneLoc Exon Structure GeneLoc location for GC03M015579:
(about GC identifiers)
Start:
|
15,577,243 bp from pter |
End:
|
15,618,134 bp from pter |
Size:
|
40,892 bases |
Orientation:
|
minus strand |
RefSeq DNA sequence:- NC_000003.10 NT_022517.17
| Proteins for HACL1
(According to
1UniProtKB,
and/or Ensembl,
Phosphorylation sites according to 2Phosphosite,
RefSeq according to NCBI,
PDB rendering according to OCA and/or Proteopedia,
Recombinant Proteins
from Invitrogen,
Millipore,
Sigma-Aldrich,
R&D Systems,
Enzo Life Sciences,
Abnova,
OriGene and/or,
Abcam,
Biochemical Assays by
Invitrogen,
Millipore,
R&D Systems,
Cell Signaling Technology, and/or
Enzo Life Sciences,
Ontologies according to Gene
Ontology Consortium 01 Apr 2009 and
Entrez Gene,
Antibodies by Invitrogen,
Millipore,
Sigma-Aldrich,
R&D Systems,
Cell Signaling Technology,
Abcam,
Abnova, and/or
Novus Biologicals)
About This Section
| UniProtKB/Swiss-Prot: HACL1_HUMAN, Q9UJ83 (See
protein sequence)Recommended Name: 2-hydroxyacyl-CoA lyase 1 Size: 578 amino acids; 63729 Da
Cofactor: Binds 1 magnesium ion per subunit
Cofactor: Binds 1 thiamine pyrophosphate per subunit
Subunit: Homotetramer
Subcellular location: Peroxisome
Secondary accessions: Q9BV42 Q9P0A2Post-translational modifications:
View phosphorylation sites using PhosphoSite2
REFSEQ proteins: NP_036392.2
ENSEMBL proteins: ENSP00000373289 ENSP00000323811
Human Recombinant Proteins Browse Origene for full length recombinant human proteins expressed in human HEK293 cells 
1 Gene Ontology (GO) cellular component term (links to tree view): About this table
Antibodies for HACL1: Assays for HACL1: | Protein
Domains/ Families for HACL1(According to InterPro, ProtoNet,
UniProtKB, and/or BLOCKS,
Sets of similar genes according to GeneDecks)
About This Section
| - Graphical View of Domain Structure for InterPro Entry Q9UJ83
ProtoNet protein and cluster: Q9UJ83 2 Blocks protein families: IPB000399 Pyruvate decarboxylase IPB011766 Thiamine pyrophosphate enzyme
UniProtKB/Swiss-Prot: HACL1_HUMAN, Q9UJ83Similarity: Belongs to the TPP enzyme family | Gene Function for HACL1
(According to MGI Jun 06 2009, UniProtKB,
IUBMB,and/or Genatlas,
shRNA from
OriGene,
Sigma-Aldrich, RNAi from
Sigma-Aldrich,
RNAi Products,
Clones, and
Q-PCR Products
from Invitrogen,
Millipore,
OriGene, and/or
Abnova,
siRNAs from
Applied Biosystems,
SYBR primers from OriGene,
Cell-based Assays from Millipore,
Ontologies according to Gene Ontology Consortium 01 Apr 2009 via
Entrez Gene.)
About This Section
|               OriGene 29mer shRNA kit in GFP-retroviral vector: NM_012260
Applied Biosystems Silencer® siRNAs for HACL1
Sigma-Aldrich siRNA for HACL1  Sigma-Aldrich shRNA for HACL1  Explore Sigma-Aldrich super-pooled esiRNAs 
              OriGene GFP tagged cDNA clone in CMV expression vector: NM_012260                                  Myc/DDK tagged cDNA clone in CMV expression vector: NM_012260                                  untagged cDNA clone in CMV expression vector: NM_012260 
Primers: Browse
Quantitative PCR Central at Invitrogen for Q-PCR LUX™ Primers               OriGene genome-wide validated SYBR primer pairs: NM_012260
UniProtKB/Swiss-Prot: HACL1_HUMAN, Q9UJ83Function: Catalyzes a carbon-carbon cleavage reaction; cleaves a 2-hydroxy-3-methylacyl-CoA into formyl-CoA and a 2-methyl-branched fatty aldehydeCatalytic activity: 2-hydroxyphytanoyl-CoA = pristanal + formyl-CoAEnzyme Number (IUBMB): EC 4.1.-.- 4 Gene Ontology (GO) molecular function terms (links to tree view): About this table | Pathways & Interactions for HACL1
(Pathways according to Invitrogen
(maps by GeneGo),
Millipore,
Cell Signaling Technology,
Sigma-Aldrich,
KEGG
and/or UniProtKB,
Sets of similar genes according to GeneDecks,
Proteins Network according to
SABiosciences,
Interactions according to 1UniProtKB,
2MINT, and/or
3STRING,
with links to IntAct and
Ensembl,
Ontologies according to Gene Ontology Consortium 01 Apr 2009 via
Entrez Gene.)
About This Section
| UniProtKB/Swiss-Prot: HACL1_HUMAN, Q9UJ83Pathway: Lipid metabolism; fatty acid metabolism 2 Interacting proteins for HACL1 (Q9UJ831, 2) via UniProtKB, MINT, and/or STRINGAbout this table
2 Gene Ontology (GO) biological process terms (links to tree view): About this table
|
Drugs & Compounds for HACL1(Chemical Compounds according to UniProtKB, Enzo Life Sciences,
Sigma-Aldrich, Tocris Bioscience, and/or
Novoseek and Drugs according to
Enzo Life Sciences and/or
PharmGKB)
About This Section
|
Browse Tocris compounds for HACL1 3 Novoseek chemical compound relationships for HACL1 gene
About this table
|
Transcripts for HACL1(GenBank/EMBL/DDBJ Accessions according to
Unigene
(Build 219 Homo sapiens; Jun 2 2009) or GenBank, RefSeq according to Entrez Gene,
DOTS (version 10), and/or
AceView,
non coding RNAs according to
RNAdb,
ESTs according to GeneTide,
exon structure from GeneLoc,
alternative splicing isoforms according to ASD and/or
ECgene,
RNAi Products from Invitrogen,
Millipore, and/or
Abnova,
siRNAs from Applied Biosystems,
Sigma-Aldrich,
shRNA from
Sigma-Aldrich,
OriGene,
Tagged/untagged cDNA clones from
OriGene, Expression Assays from Applied Biosystems) About This Section
|               OriGene 29mer shRNA kit in GFP-retroviral vector: NM_012260
Sigma-Aldrich siRNA for HACL1  Sigma-Aldrich shRNA for HACL1  Explore Sigma-Aldrich super-pooled esiRNAs 
Applied Biosystems Silencer® siRNAs: NM_012260 REFSEQ mRNAs for HACL1 gene: NM_012260.2
Applied Biosystems TaqMan ® Gene Expression Assays: NM_012260               OriGene GFP tagged cDNA clone in CMV expression vector: NM_012260                                  Myc/DDK tagged cDNA clone in CMV expression vector: NM_012260                                  untagged cDNA clone in CMV expression vector: NM_012260  Additional cDNA sequence: AF161397.1 AJ131753.1 AK056977.1 AK301546.1 AK301990.1 AK302086.1 BC001627.1 BC007440.2 CR608246.1 CR609501.1 21 DOTS entries: DT.416311 DT.100804747 DT.92442759 DT.101974633 DT.120886761 DT.315966 DT.120886740 DT.416313 DT.100804752 DT.120886833 DT.40193790 DT.120886839 DT.100737498 DT.101962225 DT.100762559 DT.120886731 DT.120886743 DT.75192882 DT.91684326 DT.95130837 DT.97846094 24/264 AceView cDNA sequences (see all 264
):CN479599 BM694820 AA039835 CA441883 BM017121 AA564217 CF243126 BU527364 BF434073 AF161397 AA298294 BM670044 BU182873 AL043205 BM759883 CB145879 BM675556 BM126759 CR608246 AI636915 AV647242 BI820732 H10428 AI741764
highest scoring ESTs for HACL1:AA071233 AF161397 AJ131753 AK056977 AL043205 AL600281 AL601151 BC001627 BC007440 BE249896 Unigene Cluster for HACL1: 2-hydroxyacyl-CoA lyase 1 Hs.63290 [show with all ESTs]Unigene Representative Sequence: NM_012260
GeneLoc Exon Structure
5/20 Alternative Splicing Database (ASD) splice patterns (SP) for HACL1 (see all 20
)
| ExUns: | 1a | · | 1b | · | 1c | · | 1d | ^ | 2a | · | 2b | · | 2c | · | 2d | ^ | 3a | · | 3b | ^ | 4 | ^ | 5 | ^ | 6 | ^ | 7 | ^ | 8a | · | 8b | ^ | 9a | · | 9b | ^ | 10 | ^ | 11a | · | 11b | ^ | 12 | ^ | 13a | · | 13b | ^ | 14a | · | 14b | ^ | |
| SP1: | |   | |   | |   | |   | - |   | - |   | |   | - |   | |   | - |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | - |   | |   | - |   | |   | |
| SP2: | |   | |   | |   | |   | - |   | - |   | |   | - |   | |   | - |   | |   | - |   | |   | |   | |   | |   | |   | |   | - |   | |   | |   | |   | - |   | |   | - |   | |   | |
| SP3: | |   | |   | |   | |   | - |   | - |   | |   | - |   | - |   | - |   | - |   | - |   | - |   | - |   | - |   | - |   | - |   | - |   | - |   | |   | |   | |   | - |   | |   | - |   | |   | |
| SP4: | |   | |   | |   | |   | - |   | - |   | |   | - |   | |   | - |   | |   | |   | - |   | - |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |
| SP5: | |   | |   | |   | |   | - |   | - |   | |   | - |   | |   | - |   | |   | |   | - |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   |
| ExUns: | 15a | · | 15b | ^ | 16a | · | 16b | ^ | 17 | ^ | 18a | · | 18b | · | 18c | |
| SP1: | |   | |   | |   | |   | - |   | |   | |   | |   | |
| SP2: | |   | |   | |   | |   | - |   | |   | |   | |   | |
| SP3: | |   | |   | |   | |   | - |   | |   | |   | |   | |
| SP4: | |   | |   | |   | |   | |   | |   | |   | |   | |
| SP5: | |   | |   | |   | |   | |   | |   | |   | |   |
About this scheme
ECgene alternative splicing isoforms for HACL1
2 Ensembl transcripts including schematic representations: ENST00000383779
ENST00000321169
|
Expression for HACL1
(Experimental results according to
1GeneNote
and GNF BioGPS,
probe sets-to-genes annotations according to
2GeneAnnot ,
3GeneTide ,
Sets of similar genes according to GeneDecks,
Electronic Northern calculations according to data from
UniGene (Build 219 Homo sapiens),
SAGE tags according to
CGAP,
plus additional links to
SOURCE, and/or
GNF
BioGPS, and/or
EXPOLDB, and/or
UniProtKB,
Expression Assays from
Applied Biosystems
)
About This Section
| HACL1 expression in normal and diseased human tissues
Applied Biosystems TaqMan ® Gene Expression Assays for HACL1
1 / 2 / 3 3 probe-sets matching HACL1 gene Data from
(Publications) and GNF BioGPS About these images About these images
CGAP SAGE TAG: ATTGAGCCAC
SOURCE GeneReport for Unigene cluster: Hs.63290 UniProtKB/Swiss-Prot: HACL1_HUMAN, Q9UJ83Tissue specificity: Expressed in high levels in liver, also expressed in kidney, heart and skeletal muscle |
Orthologs for HACL1
(Orthologs according to
1,2HomoloGene (2older version, for species not in 1newer version),
3euGenes,
4SGD
and/or
5MGI Jun 06 2009,
with possible further links to
Flybase
and/or
WormBase,
Gene Trees according to Ensembl)
About This Section
|
Orthologs for HACL1 gene from 5/18 species (see all 18
)
About this table Species with no ortholog for HACL1
ENSEMBL Gene Tree for HACL1 | Paralogs for HACL1(Paralogs according to 1HomoloGene and 2Ensembl, Pseudogenes according to 3Pseudogene.org) About This Section
| Paralogs for HACL1 gene
- ILVBL2
|
SNPs/Variants for HACL1(According to the
1NCBI SNP Database,
2Ensembl,
3PupaSUITE, and
UniProtKB,
Linkage Disequilibrium by HapMap,
Genotyping Reagents from
Applied Biosystems)
About This Section
|
HapMap Linkage Disequilibrium images for HACL1 (up to first 250kb)
|
Disorders & Mutations for HACL1
(in which this Gene is Involved, According to
OMIM, UniProtKB,
PharmGKB,
Genatlas, GeneTests,
Blood group antigen gene mutations by BGMUT,
HGMD, GAD,
HuGE Navigator,
BCGD,
and/or TGDB.)
About This Section
|
OMIM: 604300
|
Medical News for HACL1(Possibly Related Articles in
Doctor's Guide)
About This Section
| -- |
Publications for HACL1 (in
PubMed.
Associations of this gene to articles via
1Novoseek,
2HGNC,
3Entrez Gene,
4UniProtKB/Swiss-Prot,
5UniProtKB/TrEMBL,
6GAD, and/or
7PharmGKB)
About This Section
| 10/17 PubMed articles for HACL1 gene (see all 17
):- Purification, molecular cloning, and expression of 2-hydroxphytanoyl- CoA lyase, a peroxisomal thiamine hydrophosphate-dependent enzyme that catalyzes the carbon-carbon bond cleavage during alpha-oxidation of 3- methyl-branched fatty acids. (PubMed id 10468558)1, 2, 3, 4 Foulon V.... Casteels M. (1999)
- Breakdown of 2-hydroxylated straight chain fatty acids via peroxisomal 2-hydroxyphytanoyl-CoA lyase: a revised pathway for the alpha-oxidation of straight chain fatty acids. (PubMed id 15644336)2, 3 Foulon V....Casteels M. (2005)
- The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC). (PubMed id 15489334)3, 4 Gerhard D.S....Malek J. (2004)
- Cloning and functional analysis of cDNAs with open reading frames for 300 previously undefined genes expressed in CD34+ hematopoietic stem/progenitor cells. (PubMed id 11042152)3, 4 Zhang Q.H....Chen Z. (2000)
- Diversification of transcriptional modulation: large-scale identification and characterization of putative alternative promoters of human genes. (PubMed id 16344560)3 Kimura K.... Sugano S. (2006)
- Towards a proteome-scale map of the human protein-protein interaction network. (PubMed id 16189514)3 Rual J.F....Vidal M. (2005)
- Proteomic analysis of rat liver peroxisome: presence of peroxisome- specific isozyme of Lon protease. (PubMed id 14561759)3 Kikuchi M....Taniguchi H. (2004)
- Complete sequencing and characterization of 21,243 full-length human cDNAs. (PubMed id 14702039)3 Ota T....Sugano S. (2004)
- Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PubMed id 12477932)3 Strausberg R.L....Marra M.A. (2002)
- Phytanic acid alpha-oxidation: identification of 2-hydroxyphytanoyl-CoA lyase in rat liver and its localisation in peroxisomes. (PubMed id 10521701)1 Jansen G.A....Wanders R.J. (1999)
|
Search for HACL1
(in PubMed,
OMIM, and NCBI Bookshelf) About This Section
|
|
Genome Databases showing HACL1
(According to
Entrez Gene,
HGNC,
AceView,
euGenes,
Ensembl,
miRBase,
ECgene,
and/or
H-InvDB)
About This Section
|
| Other Databases showing HACL1
(According to HUGE)
About This Section
| -- |
Specialized Databases showing HACL1(According to ATLAS, HORDE, IMGT, MTDB, LEIDEN, UniProtKB/Swiss-Prot, and/or UniProtKB/TrEMBL, Wikipedia and/or GeneReviews via UniProtKB/Swiss-Prot) About This Section
|
| About This Section
| --
| Services for HACL1(Reagents available from Applied Biosystems, Antibodies and assays by Cell
Signaling Technology, Abcam, Novus Biologicals, Sigma-Aldrich, R&D Systems, Millipore, Abnova, and/or Invitrogen, Clones available from OriGene,and/or Invitrogen, Drugs and/or compounds by Sigma-Aldrich, Enzo Life Sciences, and/or Tocris Bioscience) About This Section
| 
 Products for HACL1:

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Incremental update: 13 Oct 2009
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