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Aliases for HABP4 Gene

Aliases for HABP4 Gene

  • Hyaluronan Binding Protein 4 2 3 5
  • Ki-1/57 Intracellular Antigen 3 4
  • IHABP-4 3 4
  • IHABP4 3 4
  • Chromodomain Helicase DNA Binding Protein 3 Interacting Protein 3
  • Intracellular Antigen Detected By Monoclonal Antibody Ki-1 3
  • Intracellular Hyaluronan-Binding Protein 4 3
  • Ki-1/57 3
  • SERBP1L 3

External Ids for HABP4 Gene

Previous GeneCards Identifiers for HABP4 Gene

  • GC09P090026
  • GC09P090956
  • GC09P092669
  • GC09P094592
  • GC09P096292
  • GC09P098252
  • GC09P099212
  • GC09P068823

Summaries for HABP4 Gene

GeneCards Summary for HABP4 Gene

HABP4 (Hyaluronan Binding Protein 4) is a Protein Coding gene. Among its related pathways are Response to elevated platelet cytosolic Ca2+. An important paralog of this gene is SERBP1.

UniProtKB/Swiss-Prot for HABP4 Gene

  • May be involved in nuclear functions such as the remodeling of chromatin and the regulation of transcription.

Gene Wiki entry for HABP4 Gene

No data available for Entrez Gene Summary , Tocris Summary , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for HABP4 Gene

Genomics for HABP4 Gene

Regulatory Elements for HABP4 Gene

Enhancers for HABP4 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH09F096449 1.3 FANTOM5 ENCODE 14.3 +0.5 459 2.3 ATF1 PKNOX1 ARID4B SIN3A DMAP1 ZNF48 GLIS2 ZNF143 FOS SP3 HABP4 ANKRD18CP CDC14B ZNF510 LOC105376163
GH09F096416 1.5 FANTOM5 ENCODE 10.2 -31.2 -31178 5.4 MLX ZFP64 DMAP1 YY1 SLC30A9 ZNF143 ZNF263 SP3 NFYC TBX21 EIF4BP3 LOC100421693 LINC00476 HABP4 CDC14B PIR44583 ZNF367
GH09F096485 1 Ensembl ENCODE 12.9 +36.7 36681 2.6 ATF1 NFIA TEAD1 SIN3A RAD21 ATF2 GABPA NR2F2 ZNF316 JUND HABP4 LOC105376163
GH09F096490 1 ENCODE 12.9 +41.9 41854 2.4 HDGF PKNOX1 ATF1 MLX ARID4B DMAP1 ZNF48 YY1 ZNF207 PAF1 HABP4 LOC105376163
GH09F096342 1.6 FANTOM5 Ensembl ENCODE 7.5 -105.8 -105781 4.1 HDGF PKNOX1 ARID4B SIN3A FEZF1 GLIS2 ZNF766 CBX5 ZNF143 ZNF207 HABP4 CDC14B HSD17B3 SLC35D2
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around HABP4 on UCSC Golden Path with GeneCards custom track

Promoters for HABP4 Gene
Ensembl Regulatory Elements (ENSRs) TSS Distance (bp) Size (bp) Binding Sites for Transcription Factors within promoters
ENSR00001309273 545 2201 ATF1 PKNOX1 ARID4B SIN3A ZNF48 GLIS2 ZNF143 FOS SP3 SP5

Genomic Location for HABP4 Gene

Chromosome:
9
Start:
96,450,155 bp from pter
End:
96,491,336 bp from pter
Size:
41,182 bases
Orientation:
Plus strand

Genomic View for HABP4 Gene

Genes around HABP4 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
HABP4 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for HABP4 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for HABP4 Gene

Proteins for HABP4 Gene

  • Protein details for HABP4 Gene (UniProtKB/Swiss-Prot)

    Protein Symbol:
    Q5JVS0-HABP4_HUMAN
    Recommended name:
    Intracellular hyaluronan-binding protein 4
    Protein Accession:
    Q5JVS0
    Secondary Accessions:
    • O75804
    • Q8WV33
    • Q9NYJ2

    Protein attributes for HABP4 Gene

    Size:
    413 amino acids
    Molecular mass:
    45785 Da
    Quaternary structure:
    • Interacts with SPIN1 (By similarity). Interacts with the C-terminus of CHD3. Interacts via its C-terminal region with RACK1. Interacts with p53/TP53.
    Miscellaneous:
    • Able to bind hyaluronan. However, its intracellular localization suggests that this interaction may not be relevant in vivo.
    • The interaction with RACK1 is abolished upon activation of L540 tumor cells with PMA, which results in phosphorylation and exit of HABP4 from the nucleus.

    Alternative splice isoforms for HABP4 Gene

    UniProtKB/Swiss-Prot:

neXtProt entry for HABP4 Gene

Post-translational modifications for HABP4 Gene

  • Phosphorylated by phorbol 12-myristate 13-acetate (PMA)-activated PKC isoforms at Thr-354 and Thr-375.
  • Modification sites at PhosphoSitePlus
  • Modification sites at neXtProt

Other Protein References for HABP4 Gene

No data available for DME Specific Peptides for HABP4 Gene

Domains & Families for HABP4 Gene

Protein Domains for HABP4 Gene

InterPro:
ProtoNet:

Suggested Antigen Peptide Sequences for HABP4 Gene

GenScript: Design optimal peptide antigens:

Graphical View of Domain Structure for InterPro Entry

genes like me logo Genes that share domains with HABP4: view

No data available for Gene Families and UniProtKB/Swiss-Prot for HABP4 Gene

Function for HABP4 Gene

Molecular function for HABP4 Gene

UniProtKB/Swiss-Prot Function:
May be involved in nuclear functions such as the remodeling of chromatin and the regulation of transcription.

Gene Ontology (GO) - Molecular Function for HABP4 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0005515 protein binding IPI 16169070
genes like me logo Genes that share ontologies with HABP4: view

Phenotypes for HABP4 Gene

genes like me logo Genes that share phenotypes with HABP4: view

Animal Model Products

Inhibitory RNA Products

Flow Cytometry Products

No data available for Enzyme Numbers (IUBMB) , Human Phenotype Ontology , Animal Models , Transcription Factor Targets and HOMER Transcription for HABP4 Gene

Localization for HABP4 Gene

Subcellular locations from UniProtKB/Swiss-Prot for HABP4 Gene

Cytoplasm. Nucleus. Note=Transported into the nuclear compartment in activated leukocytes.

Subcellular locations from

COMPARTMENTS
Extracellular space Cytosol Plasma membrane Cytoskeleton Lysosome Endosome Peroxisome ER Golgi Apparatus Nucleus Mitochondrion 0 1 2 3 4 5 Confidence
COMPARTMENTS Subcellular localization image for HABP4 gene
Compartment Confidence
extracellular 5
nucleus 5
cytosol 5
plasma membrane 1
mitochondrion 1
peroxisome 1

Gene Ontology (GO) - Cellular Components for HABP4 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0005576 extracellular region TAS --
GO:0005634 nucleus ISS --
GO:0005654 nucleoplasm IDA --
GO:0005737 cytoplasm ISS,IDA --
GO:0005829 cytosol TAS --
genes like me logo Genes that share ontologies with HABP4: view

Pathways & Interactions for HABP4 Gene

genes like me logo Genes that share pathways with HABP4: view

Gene Ontology (GO) - Biological Process for HABP4 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0002576 platelet degranulation TAS --
GO:0006351 transcription, DNA-templated IEA --
GO:0006355 regulation of transcription, DNA-templated IEA --
GO:0043392 negative regulation of DNA binding IDA 15862299
GO:0071260 cellular response to mechanical stimulus IEA,ISS --
genes like me logo Genes that share ontologies with HABP4: view

No data available for SIGNOR curated interactions for HABP4 Gene

Drugs & Compounds for HABP4 Gene

(1) Drugs for HABP4 Gene - From: DrugBank

Name Status Disease Links Group Role Mechanism of Action Clinical Trials
Hyaluronic acid Approved, Vet_approved Pharma Target, binder 439
genes like me logo Genes that share compounds with HABP4: view

Transcripts for HABP4 Gene

Unigene Clusters for HABP4 Gene

Hyaluronan binding protein 4:
Representative Sequences:

Inhibitory RNA Products

Flow Cytometry Products

Alternative Splicing Database (ASD) splice patterns (SP) for HABP4 Gene

No ASD Table

Relevant External Links for HABP4 Gene

GeneLoc Exon Structure for
HABP4
ECgene alternative splicing isoforms for
HABP4

Expression for HABP4 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for HABP4 Gene

mRNA expression in embryonic tissues and stem cells from LifeMap Discovery

Protein differential expression in normal tissues from HIPED for HABP4 Gene

This gene is overexpressed in Amniocyte (23.0), Pancreatic juice (9.9), and Fetal Brain (6.8).

Integrated Proteomics: protein expression in normal tissues and cell lines from ProteomicsDB, PaxDb, MaxQB, and MOPED for HABP4 Gene



NURSA nuclear receptor signaling pathways regulating expression of HABP4 Gene:

HABP4

SOURCE GeneReport for Unigene cluster for HABP4 Gene:

Hs.494567

mRNA Expression by UniProt/SwissProt for HABP4 Gene:

Q5JVS0-HABP4_HUMAN
Tissue specificity: Highly expressed in brain, heart, and kidney, and moderately expressed in skeletal muscle. Also expressed in a variety of tumor cell lines and in activated but not resting leukocytes.
genes like me logo Genes that share expression patterns with HABP4: view

Primer Products

No data available for mRNA differential expression in normal tissues and Protein tissue co-expression partners for HABP4 Gene

Orthologs for HABP4 Gene

This gene was present in the common ancestor of animals.

Orthologs for HABP4 Gene

Organism Taxonomy Gene Similarity Type Details
chimpanzee
(Pan troglodytes)
Mammalia HABP4 34 35
  • 99.6 (n)
cow
(Bos Taurus)
Mammalia HABP4 34 35
  • 88.7 (n)
dog
(Canis familiaris)
Mammalia HABP4 34 35
  • 88.51 (n)
rat
(Rattus norvegicus)
Mammalia Habp4 34
  • 85.24 (n)
mouse
(Mus musculus)
Mammalia Habp4 34 16 35
  • 85 (n)
oppossum
(Monodelphis domestica)
Mammalia HABP4 35
  • 60 (a)
OneToOne
chicken
(Gallus gallus)
Aves HABP4 34 35
  • 63.56 (n)
lizard
(Anolis carolinensis)
Reptilia HABP4 35
  • 60 (a)
OneToOne
tropical clawed frog
(Silurana tropicalis)
Amphibia habp4 34
  • 55.59 (n)
zebrafish
(Danio rerio)
Actinopterygii zgc:103482 34
  • 59.97 (n)
HABP4 35
  • 47 (a)
OneToOne
rainbow trout
(Oncorhynchus mykiss)
Actinopterygii Omy.8747 34
fruit fly
(Drosophila melanogaster)
Insecta CG41503 35
  • 23 (a)
ManyToMany
vig2 35
  • 21 (a)
ManyToMany
vig 35
  • 20 (a)
ManyToMany
Species where no ortholog for HABP4 was found in the sources mined by GeneCards:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • platypus (Ornithorhynchus anatinus)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea squirt (Ciona intestinalis)
  • sea squirt (Ciona savignyi)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)

Evolution for HABP4 Gene

ENSEMBL:
Gene Tree for HABP4 (if available)
TreeFam:
Gene Tree for HABP4 (if available)

Paralogs for HABP4 Gene

Paralogs for HABP4 Gene

(2) SIMAP similar genes for HABP4 Gene using alignment to 1 proteins:

genes like me logo Genes that share paralogs with HABP4: view

Variants for HABP4 Gene

Sequence variations from dbSNP and Humsavar for HABP4 Gene

SNP ID Clin Chr 09 pos Sequence Context AA Info Type
rs10119357 -- 96,449,342(+) ACCAA(C/G)TCTTT upstream-variant-2KB
rs1045771 -- 96,490,767(+) CCAAT(C/T)AAATG nc-transcript-variant, utr-variant-3-prime
rs10512239 -- 96,484,730(-) AACTA(C/T)TAATG intron-variant
rs1057687 -- 96,490,182(+) GGCTG(A/G)GCTGT nc-transcript-variant, utr-variant-3-prime
rs10761022 -- 96,462,464(+) AAAAA(A/T)TTGCC intron-variant

Structural Variations from Database of Genomic Variants (DGV) for HABP4 Gene

Variant ID Type Subtype PubMed ID
nsv950906 CNV deletion 24416366
nsv824998 CNV gain 20364138
nsv614933 CNV loss 21841781
nsv614930 CNV loss 21841781
nsv614924 CNV loss 21841781
nsv472681 CNV novel sequence insertion 20440878
nsv1147999 OTHER inversion 26484159
esv3621165 CNV loss 21293372
esv3545168 CNV deletion 23714750
esv2669547 CNV deletion 23128226
esv22781 CNV loss 19812545
dgv12804n54 CNV loss 21841781
dgv12803n54 CNV loss 21841781

Variation tolerance for HABP4 Gene

Residual Variation Intolerance Score: 55% of all genes are more intolerant (likely to be disease-causing)
Gene Damage Index Score: 0.58; 12.43% of all genes are more intolerant (likely to be disease-causing)

Relevant External Links for HABP4 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
HABP4

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot for HABP4 Gene

Disorders for HABP4 Gene

Relevant External Links for HABP4

Genetic Association Database (GAD)
HABP4
Human Genome Epidemiology (HuGE) Navigator
HABP4
Atlas of Genetics and Cytogenetics in Oncology and Haematology:
HABP4

No disorders were found for HABP4 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for HABP4 Gene

Publications for HABP4 Gene

  1. Molecular characterization of a novel intracellular hyaluronan- binding protein. (PMID: 10887182) Huang L. … Toole B.P. (J. Biol. Chem. 2000) 2 3 4 22 64
  2. Ki-1/57 interacts with RACK1 and is a substrate for the phosphorylation by phorbol 12-myristate 13-acetate-activated protein kinase C. (PMID: 14699138) Nery F.C. … Kobarg J. (J. Biol. Chem. 2004) 3 4 22 64
  3. Characterization, mapping and partial cDNA sequence of the 57-kD intracellular Ki-1 antigen. (PMID: 9523163) Kobarg J. … Hansen H.P. (Exp. Clin. Immunogenet. 1997) 2 3 4 64
  4. Confirmation of linkage to and localization of familial colon cancer risk haplotype on chromosome 9q22. (PMID: 20551049) Gray-McGuire C. … Wiesner G.L. (Cancer Res. 2010) 3 46 64
  5. Evidence for the interaction of the regulatory protein Ki-1/57 with p53 and its interacting proteins. (PMID: 16455055) Nery F.C. … Kobarg J. (Biochem. Biophys. Res. Commun. 2006) 3 4 64

Products for HABP4 Gene

Sources for HABP4 Gene

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