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HABP2 Gene

protein-coding   GIFtS: 59

GC10P115302
hyaluronan binding protein 2
(Previous name: hyaluronan-binding protein 2 )
Symbol approved by the HUGO Gene Nomenclature Committee (HGNC) database
Services    
(According to 1HGNC, 2Entrez Gene,
3UniProtKB/Swiss-Prot, 4UniProtKB/TrEMBL, 5OMIM, 6GeneLoc , and/or 7Ensembl, 8miRBase)
About This Section

Aliases
EC 3.4.21.- 3
FSAP 1, 2, 3, 5
HABP 1, 2
HGFAL 1, 2, 3, 5
OTTHUMP00000020505 2
PHBP 1, 2, 3, 5
Descriptions
Factor VII-activating protease 3
Factor seven-activating protease 3
Hepatocyte growth factor activator-like protein 2, 3
Plasma hyaluronan-binding protein 3
factor VII activating protein 2
hyaluronan binding protein 2 2
hyaluronan-binding protein 2 1
hyaluronic acid binding protein 2 2
plasma hyaluronan binding protein 2
External Ids
HGNC: 47981
Entrez Gene: 30262
UniProtKB: Q145203
Ensembl: ENSG000001487027
Search outside databases for aliases for HABP2 gene

Previous GC identifers: GC10P114208 GC10P114546 GC10P115444 GC10P114977

(According to Entrez Gene, Wikipedia's Gene Wiki,
UniProtKB/Swiss-Prot, and/or UniProtKB/TrEMBL)
About This Section

EntrezGene summary for HABP2:
The protein encoded by this gene is an extracellular serine protease that binds hyaluronic acid and
is involved in cell adhesion. The encoded protein is synthesized as a single chain, but then
undergoes an autoproteolytic event to form the functional heterodimer. Further autoproteolysis
leads to smaller, inactive peptides. This protease is known to cleave urinary plasminogen
activator, coagulation factor VII, and the alpha and beta chains of fibrinogen, but not
prothrombin, plasminogen, or the gamma chain of fibrinogen. [provided by RefSeq]

UniProtKB/Swiss-Prot: HABP2_HUMAN, Q14520
Function: Cleaves the alpha-chain at multiple sites and the beta-chain between 'Lys-53' and
'Lys-54' but not the gamma-chain of fibrinogen and therefore does not initiate the formation of
the fibrin clot and does not cause the fibrinolysis directly. It does not cleave (activate)
prothrombin and plasminogen but converts the inactive single chain urinary plasminogen activator
(pro-urokinase) to the active two chain form. Activates coagulation factor VII

Gene Wiki entry for HABP2

(According to GeneLoc and/or HGNC, and/or
Entrez Gene (NCBI build 36),
and/or miRBase,
Genomic Views according to UCSC and Ensembl, Transcription factor binding sites according to SABiosciences)
About This Section

Genomic View:
UCSC Golden Path with GeneCards custom track

 Transcription factor binding sites upstream to the HABP2 gene  

Entrez Gene cytogenetic band: 10q25.3   Ensembl cytogenetic band:  10q25.3   HGNC cytogenetic band: 10q25.3

HABP2 Gene in genomic location: bands according to Ensembl, locations according to (and/or Entrez Gene and/or Ensembl if different)

GeneLoc gene densities for chromosome 10         GeneLoc Exon Structure

GeneLoc location for GC10P115302:     (about GC identifiers)

Start:
115,302,775 bp from pter
End:
115,339,348 bp from pter
Size:
36,574 bases
Orientation:
plus strand
RefSeq DNA sequence:
NC_000010.9  NT_030059.12  
(According to 1UniProtKB, and/or Ensembl, Phosphorylation sites according to 2Phosphosite, RefSeq according to NCBI, PDB rendering according to OCA and/or Proteopedia, Recombinant Proteins from Invitrogen, Millipore, Sigma-Aldrich, R&D Systems, Enzo Life Sciences, Abnova, OriGene and/or, Abcam,
Biochemical Assays by Invitrogen, Millipore, R&D Systems, Cell Signaling Technology, and/or Enzo Life Sciences, Ontologies according to Gene Ontology Consortium 01 Apr 2009 and Entrez Gene, Antibodies by Invitrogen, Millipore, Sigma-Aldrich, R&D Systems, Cell Signaling Technology, Abcam, Abnova, and/or Novus Biologicals)
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UniProtKB/Swiss-Prot: HABP2_HUMAN, Q14520 (See protein sequence)
Recommended Name: Hyaluronan-binding protein 2 precursor  
Size: 560 amino acids; 62672 Da
Subunit: Heterodimer; disulfide-linked. Heterodimer of a 50 kDa heavy and a 27 kDa light chain
linked by a disulfide bond (By similarity)
Subcellular location: Secreted. Note=Secreted as an inactive single-chain precursor and is then
activated to a heterodimeric form
Secondary accessions: O00663

Post-translational modifications:

  • Proteolytic cleavage at Gly-23 or Met-27 can give rise to the 50 kDa heavy chain and cleavage at
    Arg-313 or Lys-319 can give rise to the 27 kDa light chain. The heavy chain can undergo further
    proteolytic cleavage at Lys-169 or Arg-170 to give rise to 2 inactive 26 kDa fragments and the
    light chain can undergo further proteolytic cleavage at Arg-480 to give rise to inactive 17 kDa
    and 8 kDa fragments (By similarity)1
  • View phosphorylation sites using PhosphoSite2


  • REFSEQ proteins: NP_004123.1  

    ENSEMBL proteins: 
    ENSP00000277903 


    Human Recombinant Proteins 
    Browse Drug Discovery Central at Invitrogen for human recombinant proteins
    Browse Purified and Recombinant Proteins at Millipore
    Browse Human Recombinant Proteins at Sigma-Aldrich  
    Browse R&D Systems for human recombinant proteins
    Browse recombinant and purified proteins available from Enzo Life Sciences
    Recombinant Proteins from Abcam (HABP2)
    Human Recombinant Proteins from Abnova (HABP2)
                    Browse Origene for full length recombinant human proteins expressed in human HEK293 cells 

    2 Gene Ontology (GO) cellular component terms (links to tree view):

    GO IDQualified GO termEvidencePubMed IDs
    GO:0005576 extracellular region NAS14718574
    GO:0005615 extracellular space TAS8827452
    About this table

    Antibodies for HABP2: 
    Browse Antibodies Central at Invitrogen
    Browse Millipore's Extensive Line of Mono- and Polyclonal Antibodies
    Sigma-Aldrich Antibodies for HABP2
    Browse R&D Systems for Antibodies
    Antibodies from Abcam (HABP2), each with their AbpromiseSM
    Monoclonal and Polyclonal Antibodies from Abnova (HABP2)
    Novus Biologicals Antibodies for HABP2

    Assays for HABP2: 
    Browse Invitrogen for biochemical assays
    Browse Kits and Assays available from Millipore
    Browse R&D Systems for biochemical assays
    Browse biochemical assays available from Enzo Life Sciences

    (According to InterPro, ProtoNet, UniProtKB, and/or BLOCKS, Sets of similar genes according to GeneDecks)
    About This Section

    5/10 InterPro domains/families (see all 10 ):
     IPR018059 Kringle_sub
     IPR000001 Kringle
     IPR001314 Peptidase_S1A
     IPR000742 EGF_3
     IPR013032 EGF-like_reg_CS


       GeneDecks  HABP2 for the domains selected above  
    About GeneDecksing

    Graphical View of Domain Structure for InterPro Entry Q14520

    ProtoNet protein and cluster: Q14520

    4 Blocks protein families:
    IPB000001 Kringle
    IPB001254 Serine protease
    IPB001314 Chymotrypsin serine protease family (S1) signature
    IPB006210 Type I EGF


    UniProtKB/Swiss-Prot: HABP2_HUMAN, Q14520
    Similarity: Belongs to the peptidase S1 family
    Similarity: Contains 3 EGF-like domains
    Similarity: Contains 1 kringle domain
    Similarity: Contains 1 peptidase S1 domain

    (According to MGI Jun 06 2009, UniProtKB, IUBMB,and/or Genatlas,
    shRNA from OriGene, Sigma-Aldrich, RNAi from Sigma-Aldrich,
    RNAi Products, Clones, and Q-PCR Products from Invitrogen, Millipore, OriGene, and/or Abnova, siRNAs from Applied Biosystems, SYBR primers from OriGene, Cell-based Assays from Millipore, Ontologies according to Gene Ontology Consortium 01 Apr 2009 via Entrez Gene.)
    About This Section

    Inhib.
    RNA:
    Invitrogen RNAi Products for gene knock-down (HABP2)
    Browse for Gene Knock-down Tools from Millipore
    Abnova Chimera RNAi Products for Gene knock-down (HABP2)
                  OriGene 29mer shRNA kit in GFP-retroviral vector: NM_004132

                  Applied Biosystems Silencer® siRNAs for HABP2

                  Sigma-Aldrich siRNA and siRNA Panels for HABP2  
                         Sigma-Aldrich shRNA Panels and shRNA for HABP2  
                         Explore Sigma-Aldrich super-pooled esiRNAs  

    Clones:Invitrogen Clones for HABP2
    Browse Clones for the Expression of Recombinant Proteins Available from Millipore
                  OriGene GFP tagged cDNA clone in CMV expression vector: NM_004132
                                     Myc/DDK tagged cDNA clone in CMV expression vector: NM_004132
                                     untagged cDNA clones in CMV expression vector (see all 2): NM_004132 

    Primers: Browse Quantitative PCR Central at Invitrogen for Q-PCR LUX™ Primers
                  OriGene genome-wide validated SYBR primer pairs: NM_004132

    UniProtKB/Swiss-Prot: HABP2_HUMAN, Q14520
    Function: Cleaves the alpha-chain at multiple sites and the beta-chain between 'Lys-53' and
    'Lys-54' but not the gamma-chain of fibrinogen and therefore does not initiate the formation of
    the fibrin clot and does not cause the fibrinolysis directly. It does not cleave (activate)
    prothrombin and plasminogen but converts the inactive single chain urinary plasminogen activator
    (pro-urokinase) to the active two chain form. Activates coagulation factor VII
    Enzyme Number (IUBMB): EC 3.4.21.- 

    3 Gene Ontology (GO) molecular function terms (links to tree view):

    GO IDQualified GO termEvidencePubMed IDs
    GO:0004252 serine-type endopeptidase activity IEA--
    GO:0005539 glycosaminoglycan binding TAS8827452
    GO:0008233 peptidase activity IEA--
    About this table

    (Pathways according to Invitrogen (maps by GeneGo), Millipore, Cell Signaling Technology, Sigma-Aldrich, KEGG and/or UniProtKB,
    Sets of similar genes according to GeneDecks, Proteins Network according to SABiosciences, Interactions according to 1UniProtKB, 2MINT, and/or 3STRING, with links to IntAct and Ensembl, Ontologies according to Gene Ontology Consortium 01 Apr 2009 via Entrez Gene.)
    About This Section


    1 Sigma-Aldrich "Your Favorite Gene" Pathway for  HABP2  (Your Favorite Gene powered by Ingenuity) 
     Lysine Degradation

       GeneDecks  HABP2 for the pathways selected above  
    About GeneDecksing

     Gene Network CentralTM Interacting Genes and Proteins Network for  HABP2 

      --

    2 Gene Ontology (GO) biological process terms (links to tree view):

    GO IDQualified GO termEvidencePubMed IDs
    GO:0006508 proteolysis IEA--
    GO:0007155 cell adhesion TAS8827452
    About this table
    (Chemical Compounds according to UniProtKB, Enzo Life Sciences, Sigma-Aldrich, Tocris Bioscience, and/or Novoseek and Drugs according to Enzo Life Sciences and/or PharmGKB)
    About This Section

    Browse drugs & compounds from Enzo Life Sciences
    Browse Small Molecules at Sigma-Aldrich

    Browse Tocris compounds for HABP2
    4 Novoseek chemical compound relationships for HABP2 gene
    Compound   Score   Articles   PubMed IDs for Articles with Shared Sentences (# sentences)
    heparan sulfate 42.34 3 15035435 (1), 16972797 (1)
    fibrinogen 27.42 3 11217080 (2), 15320789 (1)
    phosphatidylethanolamine 20.80 1 15320789 (1)
    calcium 0.00 3 11432747 (1), 15654766 (1)
    About this table


    (GenBank/EMBL/DDBJ Accessions according to
    Unigene (Build 219 Homo sapiens; Jun 2 2009) or GenBank,
    RefSeq according to Entrez Gene,
    DOTS (version 10), and/or AceView,
    non coding RNAs according to RNAdb,
    ESTs according to GeneTide,
    exon structure from GeneLoc, alternative splicing isoforms according to ASD and/or ECgene,
    RNAi Products from Invitrogen, Millipore, and/or Abnova,
    siRNAs from Applied Biosystems, Sigma-Aldrich,
    shRNA from Sigma-Aldrich, OriGene,
    Tagged/untagged cDNA clones from OriGene,
    Expression Assays from Applied Biosystems)
    About This Section

    Inhib.
    RNA:
    Invitrogen RNAi Products for gene knock-down (HABP2)
    Browse for Gene Knock-down Tools from Millipore
    Abnova Chimera RNAi Products for Gene knock-down (HABP2)
                  OriGene 29mer shRNA kit in GFP-retroviral vector: NM_004132

                  Sigma-Aldrich siRNA and siRNA Panels for HABP2  
                         Sigma-Aldrich shRNA Panels and shRNA for HABP2  
                         Explore Sigma-Aldrich super-pooled esiRNAs  

    Applied Biosystems Silencer® siRNAs: 

    NM_004132  

    REFSEQ mRNAs for HABP2 gene: 

    NM_004132.3   

    Applied Biosystems TaqMan ® Gene Expression Assays: 

    NM_004132  

                  OriGene GFP tagged cDNA clone in CMV expression vector: NM_004132
                                     Myc/DDK tagged cDNA clone in CMV expression vector: NM_004132
                                     untagged cDNA clones in CMV expression vector (see all 2): NM_004132 

    Additional cDNA sequence: 

    AK290832.1 AK303759.1 AK303761.1 AK303948.1 BC031412.1 D49742.1 S83182.1 

    3 DOTS entries:

    DT.418518  DT.100789919  DT.99981377 

    24/81 AceView cDNA sequences (see all 81 ):

    AI521915 NM_004132 CB162144 AI056527 BX115262 AI373912 BI761782 CB164181 
    AW771531 BC031412 S83182 N58034 D49742 AW571745 H91171 AW271339 
    AI522105 N70728 H91225 BX325239 AI242870 BP340909 T68666 AI674836 

    highest scoring ESTs for HABP2:

    D49742 AA484932 AA492062 AA634751 AA677015 AI056527 AI242870 AI373912 AI521915 AI522105 

    Unigene Cluster for HABP2:

    Hyaluronan binding protein 2
    Hs.422542  [show with all ESTs]
    Unigene Representative Sequence: NM_004132


    GeneLoc Exon Structure

    1 Ensembl transcript including schematic representation:
    ENST00000351270  
    (Experimental results according to 1GeneNote and GNF BioGPS,
    probe sets-to-genes annotations according to 2GeneAnnot , 3GeneTide , Sets of similar genes according to GeneDecks, Electronic Northern calculations according to data from UniGene (Build 219 Homo sapiens), SAGE tags according to CGAP, plus additional links to SOURCE, and/or GNF BioGPS, and/or EXPOLDB, and/or UniProtKB,
    Expression Assays from Applied Biosystems )
    About This Section

    HABP2 expression in normal and diseased human tissues

     Applied Biosystems TaqMan ® Gene Expression Assays for HABP2

    1 / 2 / 3

    3 probe-sets matching HABP2 gene


    Affymetrix
    probe-set
    Array  GeneAnnot data GeneNote data GeneTide data
    # genes Sensitivity Specificity Correlation Length Gb_Accession Consensus Uniqueness Score Rank
    742_at2, 3 U95-A 1 1.00 1.00 1.00 1.00 D49742 1.00 1.00 1.00 1

    206010_at2, 3 U133-A 1 1.00 1.00 -- -- NM_004132 0.60 1.00 0.82 1

    206010_at2 U133Plus2 1 1.00 1.00 -- -- -- -- -- -- --
    GeneDecks  HABP2 for binary patterns associated with the probe-sets selected above  
    About GeneDecksing
    About this table    
    Data from (Publications) and GNF BioGPS
        About these images
    About these images

    CGAP SAGE TAG: GCTCACAACA

    SOURCE GeneReport for Unigene cluster: Hs.422542

    Expression variation in blood from EXPOLDB for HABP2

    UniProtKB/Swiss-Prot: HABP2_HUMAN, Q14520
    Tissue specificity: Ubiquitously expressed

    (Orthologs according to 1,2HomoloGene (2older version, for species not in 1newer version), 3euGenes, 4SGD and/or 5MGI Jun 06 2009, with possible further links to Flybase and/or WormBase, Gene Trees according to Ensembl)
    About This Section


    Orthologs for HABP2 gene from 5/8 species (see all 8 )
    Organism Gene Locus Description Human
    Similarity
    NCBI accessions
    dog
    (Canis familiaris)
    HABP21   -- hyaluronan binding protein 2 85.5(n)
    82.49(a)
    477822  XM_535016.2  XP_535016.2 
    chimpanzee
    (Pan troglodytes)
    HABP21   -- hyaluronan binding protein 2 99.05(n)
    98.75(a)
    450744  XM_508042.2  XP_508042.2 
    cow
    (Bos taurus)
    HABP21   -- hyaluronan binding protein 2 85.24(n)
    81(a)
    507993  NM_001014868.1  NP_001014868.1 
    rat
    (Rattus norvegicus)
    Habp21   -- hyaluronan binding protein 2 81.02(n)
    79.01(a)
    292126  NM_001001505.1  NP_001001505.1 
    mouse
    (Mus musculus)
    Habp21, 5 195
    hyaluronic acid binding protein 21, 5 81.93(n)1
    80.82(a)1
    2262431  NM_146101.11  NP_666213.11 
     AA1082295  AA1082305  (see all 13)
    About this table        Species with no ortholog for HABP2

    ENSEMBL Gene Tree for HABP2
    (Paralogs according to 1HomoloGene
    and 2Ensembl, Pseudogenes according to 3Pseudogene.org)
    About This Section

    Paralogs for HABP2 gene
    PLAU2  F122  PLAT2  HGFAC2  

    (According to the 1NCBI SNP Database, 2Ensembl, 3PupaSUITE, and UniProtKB, Linkage Disequilibrium by HapMap, Genotyping Reagents from Applied Biosystems)
    About This Section


    10/405 NCBI SNPs in HABP2 are shown (see all 405 )
    (Click for Applied Biosystems TaqMan ® Genotyping Assay)  (see all 281)
    ABGenomic DataTranscription DataAllele Frequencies
    SNP IDValidChr 10 posSequenceRecsAA
    Chg
    TypeMoreRecsAllele
    freq
    PopTotal
    sample
    More
    ------------
    rs22408791,2
    A,C,F,H,O115302801(-) GGGGGA/GAAAAT 1 -- ut51 trp322Minor allele frequency- G:0.26EA NS NA EU WA 3356
    rs43872891,2
    A,C,F,H115301876(+) AGTCCG/ACGTGC 1 -- ng51 tfbs312Minor allele frequency- A:0.03NS EU EA WA 1156
    rs115756881,2
    C,F,H115333047(+) GGGTGG/CAGAAG 1 Q/E mis1 ese310Minor allele frequency- C:0.01NS EU EA WA 918
    rs37813911,2
    A,C,F115301664(-) GCCATC/AAACTC 1 -- ng511Minor allele frequency- A:0.45EA 1446
    rs70805361,2
    C,F,H115338036(+) GTGTGG/AGAAGA 1 E/G mis19Minor allele frequency- A:0.02NS EA WA EU 812
    rs42443081,2
    C,F,H115301726(+) GAAGTT/CATTTA 1 -- ng514Minor allele frequency- C:0.03EU EA WA 418
    rs115757501,2
    C,F,H115325690(+) GCCTCG/ATCCAT 1 I/V mis1 ese310Minor allele frequency- A:0.01NS EU EA WA 926
    rs22408801,2
    C,F,H115302596(-) CCTGGC/TTCCAC 1 -- ng5121Minor allele frequency- T:0.07EA NS EU WA 3478
    rs37585891,2
    C,F,H115301037(-) ATTGCT/GATTTC 1 -- ng518Minor allele frequency- G:0.11EU EA WA 836
    rs115756211,2
    F,H115302458(+) TCTATT/AAACAT 1 -- ng516Minor allele frequency- A:0.01NS EU EA WA 504
    About this table

    HapMap Linkage Disequilibrium images for HABP2 (up to first 250kb)

    (in which this Gene is Involved, According to OMIM, UniProtKB, Novoseek, PharmGKB, Genatlas, GeneTests, Blood group antigen gene mutations by BGMUT, HGMD, GAD, HuGE Navigator, BCGD, and/or TGDB.)
    About This Section

    OMIM: 603924

    10 Novoseek disease relationships for HABP2 gene

    Disease   Score   Articles   PubMed IDs for Articles with Shared Sentences (# sentences)
    thromboembolism 51.48 17 16543963 (2), 15486068 (2), 18278202 (1), 16676090 (1) (see all 8)
    carotid stenosis 49.91 13 12578864 (2), 18605956 (1), 14977886 (1), 15486068 (1)
    pathological processes 16.06 1 15035435 (1)
    nsclc 2.11 1 17016581 (1)
    breast carcinoma 2.04 1 15690337 (1)
    inflammation 0.00 4 1856461 (1), 17483138 (1), 18394684 (1)
    tumors 0.00 3 15035435 (1), 16401353 (1)
    adenocarcinoma 0.00 2 12386823 (1)
    atherosclerosis 0.00 3 18278176 (1)
    carcinoma squamous cell 0.00 1 12386823 (1)
    About this table

    Human Gene Mutation Database: HABP2
    Genetic Association Database: HABP2
    Human Genome Epidemiology Navigator: HABP2 (5 documents)

    (Possibly Related Articles in Doctor's Guide)
    About This Section

      --

    (in PubMed. Associations of this gene to articles via 1Novoseek, 2HGNC, 3Entrez Gene, 4UniProtKB/Swiss-Prot, 5UniProtKB/TrEMBL, 6GAD, and/or 7PharmGKB)
    About This Section

    10/91 PubMed articles for HABP2 gene (see all 91 ):
    (in PubMed, OMIM, and NCBI Bookshelf)
    About This Section

     ANDOR
    Aliases
    Free Text  

      Query String
    PubMed
    OMIM
    NCBI Bookshelf
      (Note: In FireFox, select the above section and copy using Ctrl-C)
    (According to Entrez Gene, HGNC, AceView, euGenes, Ensembl, miRBase, ECgene, and/or H-InvDB)
    About This Section

    Entrez Gene: 3026 HGNC: 4798 AceView: HABP2 Ensembl:ENSG00000148702 euGenes: HUgn3026
    ECgene: HABP2 H-InvDB: HABP2
    (According to HUGE)
    About This Section

      --
    (According to ATLAS, HORDE, IMGT, MTDB, LEIDEN, UniProtKB/Swiss-Prot, and/or UniProtKB/TrEMBL,
    Wikipedia and/or GeneReviews via UniProtKB/Swiss-Prot)
    About This Section

    NameDescription
    SeattleSNPshttp://pga.gs.washington.edu/data/habp2/
    (Available from WIS Yeda, Salk, Tufts)
    About This Section

      --
    (Reagents available from Applied Biosystems, Antibodies and assays by Cell Signaling Technology, Abcam, Novus Biologicals,
    Sigma-Aldrich, R&D Systems, Millipore, Abnova, and/or Invitrogen, Clones available from OriGene,and/or Invitrogen, Drugs and/or compounds by Sigma-Aldrich,
    Enzo Life Sciences, and/or Tocris Bioscience)
    About This Section



    Products for HABP2:
     TaqMan ® Gene Expression Assays
     TaqMan ® Genotyping Assays
      Free SNP selection tool



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     Predesigned and custom siRNAs for HABP2 Antibodies for HABP2
     Explore super-pooled esiRNAs Browse proteins at Sigma-Aldrich
     Lentivirus-delivered shRNAs for HABP2 Browse small molecules at Sigma-Aldrich
     "Your Favorite Gene" Pathwaysfeedback


      
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     Antibodies for HABP2

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