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Aliases & Descriptions for HABP2
(According to
1HGNC,
2Entrez Gene,
3UniProtKB/Swiss-Prot,
4UniProtKB/TrEMBL, 5OMIM, 6GeneLoc
, and/or 7Ensembl,
8miRBase) About This Section
|
| Aliases |
|---|
| EC 3.4.21.- 3 | | FSAP 1, 2, 3, 5 | | HABP 1, 2 | | HGFAL 1, 2, 3, 5 | | OTTHUMP00000020505 2 | | PHBP 1, 2, 3, 5 |
| | | Descriptions |
|---|
| Factor VII-activating protease 3 | | Factor seven-activating protease 3 | | Hepatocyte growth factor activator-like protein 2, 3 | | Plasma hyaluronan-binding protein 3 | | factor VII activating protein 2 | | hyaluronan binding protein 2 2 | | hyaluronan-binding protein 2 1 | | hyaluronic acid binding protein 2 2 | | plasma hyaluronan binding protein 2 |
|
| | Search outside databases for aliases for HABP2 genePrevious GC identifers: GC10P114208 GC10P114546 GC10P115444 GC10P114977 |
Summaries for HABP2(According to Entrez Gene,
Wikipedia's
Gene Wiki,
UniProtKB/Swiss-Prot,
and/or
UniProtKB/TrEMBL)
About This Section
| EntrezGene summary for HABP2: The protein encoded by this gene is an extracellular serine protease that binds hyaluronic acid and is involved in cell adhesion. The encoded protein is synthesized as a single chain, but then undergoes an autoproteolytic event to form the functional heterodimer. Further autoproteolysis leads to smaller, inactive peptides. This protease is known to cleave urinary plasminogen activator, coagulation factor VII, and the alpha and beta chains of fibrinogen, but not prothrombin, plasminogen, or the gamma chain of fibrinogen. [provided by RefSeq] UniProtKB/Swiss-Prot: HABP2_HUMAN, Q14520Function: Cleaves the alpha-chain at multiple sites and the beta-chain between 'Lys-53' and 'Lys-54' but not the gamma-chain of fibrinogen and therefore does not initiate the formation of the fibrin clot and does not cause the fibrinolysis directly. It does not cleave (activate) prothrombin and plasminogen but converts the inactive single chain urinary plasminogen activator (pro-urokinase) to the active two chain form. Activates coagulation factor VIIGene Wiki entry for HABP2 |
Genomic Location for HABP2
(According to
GeneLoc and/or
HGNC, and/or
Entrez Gene (NCBI build 36),
and/or miRBase,
Genomic Views according to
UCSC and
Ensembl,
Transcription factor binding sites according to
SABiosciences) About This Section
| Genomic View: UCSC Golden Path with GeneCards custom track
Transcription factor binding sites upstream to the HABP2 gene 
Entrez Gene cytogenetic band: 10q25.3 Ensembl cytogenetic band: 10q25.3 HGNC cytogenetic band: 10q25.3HABP2 Gene in genomic location: bands according to Ensembl, locations according to
(and/or Entrez Gene and/or Ensembl if different)
 GeneLoc gene densities for chromosome 10 GeneLoc Exon Structure GeneLoc location for GC10P115302:
(about GC identifiers)
Start:
|
115,302,775 bp from pter |
End:
|
115,339,348 bp from pter |
Size:
|
36,574 bases |
Orientation:
|
plus strand |
RefSeq DNA sequence:- NC_000010.9 NT_030059.12
| Proteins for HABP2
(According to
1UniProtKB,
and/or Ensembl,
Phosphorylation sites according to 2Phosphosite,
RefSeq according to NCBI,
PDB rendering according to OCA and/or Proteopedia,
Recombinant Proteins
from Invitrogen,
Millipore,
Sigma-Aldrich,
R&D Systems,
Enzo Life Sciences,
Abnova,
OriGene and/or,
Abcam,
Biochemical Assays by
Invitrogen,
Millipore,
R&D Systems,
Cell Signaling Technology, and/or
Enzo Life Sciences,
Ontologies according to Gene
Ontology Consortium 01 Apr 2009 and
Entrez Gene,
Antibodies by Invitrogen,
Millipore,
Sigma-Aldrich,
R&D Systems,
Cell Signaling Technology,
Abcam,
Abnova, and/or
Novus Biologicals)
About This Section
| UniProtKB/Swiss-Prot: HABP2_HUMAN, Q14520 (See
protein sequence)Recommended Name: Hyaluronan-binding protein 2 precursor Size: 560 amino acids; 62672 Da
Subunit: Heterodimer; disulfide-linked. Heterodimer of a 50 kDa heavy and a 27 kDa light chain linked by a disulfide bond (By similarity)
Subcellular location: Secreted. Note=Secreted as an inactive single-chain precursor and is then activated to a heterodimeric form
Secondary accessions: O00663Post-translational modifications:
Proteolytic cleavage at Gly-23 or Met-27 can give rise to the 50 kDa heavy chain and cleavage at Arg-313 or Lys-319 can give rise to the 27 kDa light chain. The heavy chain can undergo further proteolytic cleavage at Lys-169 or Arg-170 to give rise to 2 inactive 26 kDa fragments and the light chain can undergo further proteolytic cleavage at Arg-480 to give rise to inactive 17 kDa and 8 kDa fragments (By similarity)1
View phosphorylation sites using PhosphoSite2
REFSEQ proteins: NP_004123.1
ENSEMBL proteins: ENSP00000277903
Human Recombinant Proteins Browse Origene for full length recombinant human proteins expressed in human HEK293 cells 
2 Gene Ontology (GO) cellular component terms (links to tree view): About this table
Antibodies for HABP2: Assays for HABP2: | Protein
Domains/ Families for HABP2(According to InterPro, ProtoNet,
UniProtKB, and/or BLOCKS,
Sets of similar genes according to GeneDecks)
About This Section
| - Graphical View of Domain Structure for InterPro Entry Q14520
ProtoNet protein and cluster: Q14520 4 Blocks protein families: IPB000001 Kringle IPB001254 Serine protease IPB001314 Chymotrypsin serine protease family (S1) signature IPB006210 Type I EGF
UniProtKB/Swiss-Prot: HABP2_HUMAN, Q14520Similarity: Belongs to the peptidase S1 familySimilarity: Contains 3 EGF-like domainsSimilarity: Contains 1 kringle domainSimilarity: Contains 1 peptidase S1 domain | Gene Function for HABP2
(According to MGI Jun 06 2009, UniProtKB,
IUBMB,and/or Genatlas,
shRNA from
OriGene,
Sigma-Aldrich, RNAi from
Sigma-Aldrich,
RNAi Products,
Clones, and
Q-PCR Products
from Invitrogen,
Millipore,
OriGene, and/or
Abnova,
siRNAs from
Applied Biosystems,
SYBR primers from OriGene,
Cell-based Assays from Millipore,
Ontologies according to Gene Ontology Consortium 01 Apr 2009 via
Entrez Gene.)
About This Section
|               OriGene 29mer shRNA kit in GFP-retroviral vector: NM_004132
Applied Biosystems Silencer® siRNAs for HABP2
Sigma-Aldrich siRNA and siRNA Panels for HABP2  Sigma-Aldrich shRNA Panels and shRNA for HABP2  Explore Sigma-Aldrich super-pooled esiRNAs 
              OriGene GFP tagged cDNA clone in CMV expression vector: NM_004132                                  Myc/DDK tagged cDNA clone in CMV expression vector: NM_004132                                  untagged cDNA clones in CMV expression vector (see all 2): NM_004132 
Primers: Browse
Quantitative PCR Central at Invitrogen for Q-PCR LUX™ Primers               OriGene genome-wide validated SYBR primer pairs: NM_004132
UniProtKB/Swiss-Prot: HABP2_HUMAN, Q14520Function: Cleaves the alpha-chain at multiple sites and the beta-chain between 'Lys-53' and 'Lys-54' but not the gamma-chain of fibrinogen and therefore does not initiate the formation of the fibrin clot and does not cause the fibrinolysis directly. It does not cleave (activate) prothrombin and plasminogen but converts the inactive single chain urinary plasminogen activator (pro-urokinase) to the active two chain form. Activates coagulation factor VIIEnzyme Number (IUBMB): EC 3.4.21.- 3 Gene Ontology (GO) molecular function terms (links to tree view): About this table | Pathways & Interactions for HABP2
(Pathways according to Invitrogen
(maps by GeneGo),
Millipore,
Cell Signaling Technology,
Sigma-Aldrich,
KEGG
and/or UniProtKB,
Sets of similar genes according to GeneDecks,
Proteins Network according to
SABiosciences,
Interactions according to 1UniProtKB,
2MINT, and/or
3STRING,
with links to IntAct and
Ensembl,
Ontologies according to Gene Ontology Consortium 01 Apr 2009 via
Entrez Gene.)
About This Section
| 1 Sigma-Aldrich "Your Favorite Gene" Pathway for HABP2 (Your Favorite Gene powered by Ingenuity) 
Gene Network CentralTM Interacting Genes and Proteins Network for HABP2 
--2 Gene Ontology (GO) biological process terms (links to tree view): About this table
|
Drugs & Compounds for HABP2(Chemical Compounds according to UniProtKB, Enzo Life Sciences,
Sigma-Aldrich, Tocris Bioscience, and/or
Novoseek and Drugs according to
Enzo Life Sciences and/or
PharmGKB)
About This Section
|
Browse Tocris compounds for HABP2 4 Novoseek chemical compound relationships for HABP2 gene
About this table
|
Transcripts for HABP2(GenBank/EMBL/DDBJ Accessions according to
Unigene
(Build 219 Homo sapiens; Jun 2 2009) or GenBank, RefSeq according to Entrez Gene,
DOTS (version 10), and/or
AceView,
non coding RNAs according to
RNAdb,
ESTs according to GeneTide,
exon structure from GeneLoc,
alternative splicing isoforms according to ASD and/or
ECgene,
RNAi Products from Invitrogen,
Millipore, and/or
Abnova,
siRNAs from Applied Biosystems,
Sigma-Aldrich,
shRNA from
Sigma-Aldrich,
OriGene,
Tagged/untagged cDNA clones from
OriGene, Expression Assays from Applied Biosystems) About This Section
|               OriGene 29mer shRNA kit in GFP-retroviral vector: NM_004132
Sigma-Aldrich siRNA and siRNA Panels for HABP2  Sigma-Aldrich shRNA Panels and shRNA for HABP2  Explore Sigma-Aldrich super-pooled esiRNAs 
Applied Biosystems Silencer® siRNAs: NM_004132 REFSEQ mRNAs for HABP2 gene: NM_004132.3
Applied Biosystems TaqMan ® Gene Expression Assays: NM_004132               OriGene GFP tagged cDNA clone in CMV expression vector: NM_004132                                  Myc/DDK tagged cDNA clone in CMV expression vector: NM_004132                                  untagged cDNA clones in CMV expression vector (see all 2): NM_004132  Additional cDNA sequence: AK290832.1 AK303759.1 AK303761.1 AK303948.1 BC031412.1 D49742.1 S83182.1 3 DOTS entries: DT.418518 DT.100789919 DT.99981377 24/81 AceView cDNA sequences (see all 81
):AI521915 NM_004132 CB162144 AI056527 BX115262 AI373912 BI761782 CB164181 AW771531 BC031412 S83182 N58034 D49742 AW571745 H91171 AW271339 AI522105 N70728 H91225 BX325239 AI242870 BP340909 T68666 AI674836
highest scoring ESTs for HABP2:D49742 AA484932 AA492062 AA634751 AA677015 AI056527 AI242870 AI373912 AI521915 AI522105 Unigene Cluster for HABP2: Hyaluronan binding protein 2 Hs.422542 [show with all ESTs]Unigene Representative Sequence: NM_004132
GeneLoc Exon Structure
1 Ensembl transcript including schematic representation: ENST00000351270
|
Expression for HABP2
(Experimental results according to
1GeneNote
and GNF BioGPS,
probe sets-to-genes annotations according to
2GeneAnnot ,
3GeneTide ,
Sets of similar genes according to GeneDecks,
Electronic Northern calculations according to data from
UniGene (Build 219 Homo sapiens),
SAGE tags according to
CGAP,
plus additional links to
SOURCE, and/or
GNF
BioGPS, and/or
EXPOLDB, and/or
UniProtKB,
Expression Assays from
Applied Biosystems
)
About This Section
| HABP2 expression in normal and diseased human tissues
Applied Biosystems TaqMan ® Gene Expression Assays for HABP2
1 / 2 / 3 3 probe-sets matching HABP2 gene Data from
(Publications) and GNF BioGPS About these images About these images
CGAP SAGE TAG: GCTCACAACA
SOURCE GeneReport for Unigene cluster: Hs.422542
Expression variation in blood from EXPOLDB for HABP2 UniProtKB/Swiss-Prot: HABP2_HUMAN, Q14520Tissue specificity: Ubiquitously expressed |
Orthologs for HABP2
(Orthologs according to
1,2HomoloGene (2older version, for species not in 1newer version),
3euGenes,
4SGD
and/or
5MGI Jun 06 2009,
with possible further links to
Flybase
and/or
WormBase,
Gene Trees according to Ensembl)
About This Section
|
Orthologs for HABP2 gene from 5/8 species (see all 8
)
About this table Species with no ortholog for HABP2
ENSEMBL Gene Tree for HABP2 | Paralogs for HABP2(Paralogs according to 1HomoloGene and 2Ensembl, Pseudogenes according to 3Pseudogene.org) About This Section
| Paralogs for HABP2 gene
- PLAU2 F122 PLAT2 HGFAC2
|
SNPs/Variants for HABP2(According to the
1NCBI SNP Database,
2Ensembl,
3PupaSUITE, and
UniProtKB,
Linkage Disequilibrium by HapMap,
Genotyping Reagents from
Applied Biosystems)
About This Section
|
HapMap Linkage Disequilibrium images for HABP2 (up to first 250kb)
|
Disorders & Mutations for HABP2
(in which this Gene is Involved, According to
OMIM, UniProtKB,
Novoseek, PharmGKB,
Genatlas, GeneTests,
Blood group antigen gene mutations by BGMUT,
HGMD, GAD,
HuGE Navigator,
BCGD,
and/or TGDB.)
About This Section
|
OMIM: 603924 10 Novoseek disease relationships for HABP2 gene
About this table
Human Gene Mutation Database: HABP2 Genetic Association Database: HABP2 Human Genome Epidemiology Navigator: HABP2 (5 documents)
|
Medical News for HABP2(Possibly Related Articles in
Doctor's Guide)
About This Section
| -- |
Publications for HABP2 (in
PubMed.
Associations of this gene to articles via
1Novoseek,
2HGNC,
3Entrez Gene,
4UniProtKB/Swiss-Prot,
5UniProtKB/TrEMBL,
6GAD, and/or
7PharmGKB)
About This Section
| 10/91 PubMed articles for HABP2 gene (see all 91
):- Purification and characterization of a novel hyaluronan-binding protein (PHBP) from human plasma: it has three EGF, a kringle and a serine protease domain, similar to hepatocyte growth factor activator. (PubMed id 8827452)1, 2, 3, 4 Choi-Miura N.-H....Tomita M. (1996)
- Factor VII activating protease (FSAP): a novel protease in hemostasis. (PubMed id 12437095)1, 2, 3 Romisch J. (2002)
- Marburg I polymorphism of factor VII-activating protease is associated with idiopathic venous thromboembolism. (PubMed id 15486068)1, 3, 6 Hoppe B....Salama A. (2005)
- Marburg I polymorphism of factor VII-activating protease: a prominent risk predictor of carotid stenosis. (PubMed id 12578864)1, 3, 4 Willeit J....Roemisch J. (2003)
- Identification of the substrates for plasma hyaluronan binding protein. (PubMed id 11217080)1, 3, 4 Choi-Miura N.H.... Tomita M. (2001)
- The factor VII activating protease G511E (Marburg) variant and cardiovascular risk. (PubMed id 15543324)1, 3, 6 Ireland H....Humphries S.E. (2004)
- The DNA sequence and comparative analysis of human chromosome 10. (PubMed id 15164054)3, 4 Deloukas P.... Rogers J. (2004)
- The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC). (PubMed id 15489334)3, 4 Gerhard D.S....Malek J. (2004)
- Factor VII-activating protease in patients with acute deep venous thrombosis. (PubMed id 18394684)1, 3 Sidelmann J.J....Jespersen J. (2008)
- Extracellular RNA is a natural cofactor for the (auto-)activation of Factor VII-activating protease (FSAP). (PubMed id 15654766)1, 3 Nakazawa F....Preissner K.T. (2005)
|
Search for HABP2
(in PubMed,
OMIM, and NCBI Bookshelf) About This Section
|
|
Genome Databases showing HABP2
(According to
Entrez Gene,
HGNC,
AceView,
euGenes,
Ensembl,
miRBase,
ECgene,
and/or
H-InvDB)
About This Section
|
| Other Databases showing HABP2
(According to HUGE)
About This Section
| -- |
Specialized Databases showing HABP2(According to ATLAS, HORDE, IMGT, MTDB, LEIDEN, UniProtKB/Swiss-Prot, and/or UniProtKB/TrEMBL, Wikipedia and/or GeneReviews via UniProtKB/Swiss-Prot) About This Section
|
| Name | Description |
| SeattleSNPs | http://pga.gs.washington.edu/data/habp2/ |
|
| | | About This Section
| --
| Services for HABP2(Reagents available from Applied Biosystems, Antibodies and assays by Cell
Signaling Technology, Abcam, Novus Biologicals, Sigma-Aldrich, R&D Systems, Millipore, Abnova, and/or Invitrogen, Clones available from OriGene,and/or Invitrogen, Drugs and/or compounds by Sigma-Aldrich, Enzo Life Sciences, and/or Tocris Bioscience) About This Section
| 
 Products for HABP2:

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Incremental update: 13 Oct 2009
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