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Aliases for H3F3AP6 Gene

Aliases for H3F3AP6 Gene

  • H3 Histone, Family 3A, Pseudogene 6 2 3 5
  • H3 Histone, Family 3A Pseudogene 3
  • H3 Histone Pseudogene 3
  • P21 3

External Ids for H3F3AP6 Gene

Previous GeneCards Identifiers for H3F3AP6 Gene

  • GC04M140620

Summaries for H3F3AP6 Gene

GeneCards Summary for H3F3AP6 Gene

H3F3AP6 (H3 Histone, Family 3A, Pseudogene 6) is a Pseudogene.

Additional gene information for H3F3AP6 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for H3F3AP6 Gene

Genomics for H3F3AP6 Gene

GeneHancer (GH) Regulatory Elements for H3F3AP6 Gene

Promoters and enhancers for H3F3AP6 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH04I139081 Promoter/Enhancer 2.4 EPDnew FANTOM5 Ensembl ENCODE 5.9 +614.9 614888 4.4 ZFP64 FEZF1 DMAP1 YY1 ZNF213 E2F8 ZNF143 ZNF548 SP3 NFYC ELF2 NAA15 NOCT ENSG00000273247 LOC105377448 MGARP RAB33B H3F3AP6 GC04P139099 RNU6-531P
GH04I139451 Promoter/Enhancer 2.1 EPDnew Ensembl ENCODE 4.5 +244.4 244374 5 HDGF PKNOX1 ARID4B SIN3A DMAP1 ZNF2 YY1 POLR2B ZNF213 E2F8 RAB33B LOC101927451 ENSG00000273247 NDUFC1 MGARP H3F3AP6 GC04P139503
GH04I139312 Enhancer 1.4 FANTOM5 Ensembl ENCODE dbSUPER 4.5 +383.8 383809 4.8 HDAC1 PKNOX1 LEF1 BACH1 ZMYM3 PAX8 CHAMP1 CC2D1A GATA3 ZNF316 NDUFC1 MGARP RAB33B H3F3AP6 ELF2 GC04P139319 NAA15
GH04I139460 Enhancer 0.5 ENCODE 4.5 +237.6 237559 1 USF1 MAX NFYC USF2 RAB33B H3F3AP6 LOC101927451 GC04P139503
GH04I139323 Enhancer 0.5 Ensembl 4.5 +374.8 374834 0.8 NFIC PRDM6 MZF1 PRDM4 RAB33B NAA15 NDUFC1 MGARP H3F3AP6 RNU6-1214P GC04P139370
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data dump

GeneHancers around H3F3AP6 on UCSC Golden Path with GeneCards custom track

Genomic Locations for H3F3AP6 Gene

Genomic Locations for H3F3AP6 Gene
chr4:139,697,626-139,698,635
(GRCh38/hg38)
Size:
1,010 bases
Orientation:
Minus strand
chr4:140,618,780-140,619,789
(GRCh37/hg19)

Genomic View for H3F3AP6 Gene

Genes around H3F3AP6 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
H3F3AP6 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for H3F3AP6 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for H3F3AP6 Gene

Proteins for H3F3AP6 Gene

  • Protein details for H3F3AP6 Gene (UniProtKB/TrEMBL)

    Protein Symbol:
    A0A1X8XL64
    Recommended name:
    Histone H3
    Protein Accession:
    A0A1X8XL64

    Protein attributes for H3F3AP6 Gene

    Size:
    139 amino acids
    Molecular mass:
    15507 Da
    Quaternary structure:
    • The nucleosome is a histone octamer containing two molecules each of H2A, H2B, H3 and H4 assembled in one H3-H4 heterotetramer and two H2A-H2B heterodimers. The octamer wraps approximately 147 bp of DNA.

    Three dimensional structures from OCA and Proteopedia for H3F3AP6 Gene

neXtProt entry for H3F3AP6 Gene

Post-translational modifications for H3F3AP6 Gene

No Post-translational modifications

No data available for DME Specific Peptides for H3F3AP6 Gene

Domains & Families for H3F3AP6 Gene

Protein Domains for H3F3AP6 Gene

Graphical View of Domain Structure for InterPro Entry

genes like me logo Genes that share domains with H3F3AP6: view

No data available for Gene Families , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for H3F3AP6 Gene

Function for H3F3AP6 Gene

Animal Model Products

miRNA for H3F3AP6 Gene

miRTarBase miRNAs that target H3F3AP6

Clone Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , Transcription Factor Targets and HOMER Transcription for H3F3AP6 Gene

Localization for H3F3AP6 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for H3F3AP6 Gene

Pathways & Interactions for H3F3AP6 Gene

SuperPathways for H3F3AP6 Gene

No Data Available

Interacting Proteins for H3F3AP6 Gene

Gene Ontology (GO) - Biological Process for H3F3AP6 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for H3F3AP6 Gene

Drugs & Compounds for H3F3AP6 Gene

No Compound Related Data Available

Transcripts for H3F3AP6 Gene

mRNA/cDNA for H3F3AP6 Gene

(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Clone Products

Alternative Splicing Database (ASD) splice patterns (SP) for H3F3AP6 Gene

No ASD Table

Relevant External Links for H3F3AP6 Gene

GeneLoc Exon Structure for
H3F3AP6
ECgene alternative splicing isoforms for
H3F3AP6

Expression for H3F3AP6 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for H3F3AP6 Gene

mRNA differential expression in normal tissues according to GTEx for H3F3AP6 Gene

This gene is overexpressed in Whole Blood (x15.5).

NURSA nuclear receptor signaling pathways regulating expression of H3F3AP6 Gene:

H3F3AP6
genes like me logo Genes that share expression patterns with H3F3AP6: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for H3F3AP6 Gene

Orthologs for H3F3AP6 Gene

Evolution for H3F3AP6 Gene

ENSEMBL:
Gene Tree for H3F3AP6 (if available)
TreeFam:
Gene Tree for H3F3AP6 (if available)

No data available for Orthologs for H3F3AP6 Gene

Paralogs for H3F3AP6 Gene

No data available for Paralogs for H3F3AP6 Gene

Variants for H3F3AP6 Gene

Additional Variant Information for H3F3AP6 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
H3F3AP6

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations from dbSNP and Humsavar , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for H3F3AP6 Gene

Disorders for H3F3AP6 Gene

No disorders were found for H3F3AP6 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for H3F3AP6 Gene

Publications for H3F3AP6 Gene

  1. The human histone H3 complement anno 2011. (PMID: 21782046) Ederveen TH … Logie C (Biochimica et biophysica acta 2011) 2 3 58
  2. Proteomic analysis of α4β1 integrin adhesion complexes reveals α-subunit-dependent protein recruitment. (PMID: 22623428) Byron A … Humphries MJ (Proteomics 2012) 3 58
  3. Poly(ADP-ribosyl)ation directs recruitment and activation of an ATP-dependent chromatin remodeler. (PMID: 19666485) Gottschalk AJ … Conaway RC (Proceedings of the National Academy of Sciences of the United States of America 2009) 3 58

Products for H3F3AP6 Gene

Sources for H3F3AP6 Gene

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