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Aliases for H3F3AP6 Gene

Aliases for H3F3AP6 Gene

  • H3 Histone, Family 3A, Pseudogene 6 2 3 5
  • H3 Histone, Family 3A Pseudogene 3
  • H3 Histone Pseudogene 3
  • P21 3

External Ids for H3F3AP6 Gene

Previous GeneCards Identifiers for H3F3AP6 Gene

  • GC04M140620

Summaries for H3F3AP6 Gene

GeneCards Summary for H3F3AP6 Gene

H3F3AP6 (H3 Histone, Family 3A, Pseudogene 6) is a Pseudogene.

No data available for Entrez Gene Summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for H3F3AP6 Gene

Genomics for H3F3AP6 Gene

Regulatory Elements for H3F3AP6 Gene

Enhancers for H3F3AP6 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH04F139081 1.6 FANTOM5 ENCODE 5.9 +614.9 614889 4.4 HDGF PKNOX1 ARNT CREB3L1 ZFP64 ARID4B SIN3A FEZF1 DMAP1 ZNF2 NAA15 ELF2 NOCT ENSG00000273247 LOC105377448 MGARP RAB33B H3F3AP6 GC04P139099 RNU6-531P
GH04F139311 1.5 FANTOM5 Ensembl ENCODE 4.5 +384.1 384135 6.2 PKNOX1 RAD21 YY1 ZNF335 GLIS2 FOS CREM EGR2 ZNF202 ZNF263 NDUFC1 MGARP MAML3 RAB33B H3F3AP6 ELF2 GC04P139319
GH04F139451 1.1 ENCODE 4.5 +244.4 244374 5.0 HDGF PKNOX1 CREB3L1 ARNT ARID4B SIN3A DMAP1 ZNF2 YY1 ZNF143 RAB33B NDUFC1 MAML3 NAA15 MGARP H3F3AP6 LOC101927451 GC04P139503
GH04F139460 0.8 Ensembl ENCODE 4.5 +237.6 237559 1.0 USF1 RAD51 TEAD4 MAX NFYC USF2 RAB33B H3F3AP6 LOC101927451 GC04P139503
GH04F139357 0.5 FANTOM5 4.5 +340.6 340612 0.4 ZNF623 MGARP H3F3AP6 GC04P139370 RNU6-1214P
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around H3F3AP6 on UCSC Golden Path with GeneCards custom track

Promoters for H3F3AP6 Gene
Ensembl Regulatory Elements (ENSRs) TSS Distance (bp) Size (bp) Binding Sites for Transcription Factors within promoters
ENSR00001863749 35 400 CTCF ZBTB33 PRDM1

Genomic Location for H3F3AP6 Gene

Chromosome:
4
Start:
139,697,626 bp from pter
End:
139,698,635 bp from pter
Size:
1,010 bases
Orientation:
Minus strand

Genomic View for H3F3AP6 Gene

Genes around H3F3AP6 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
H3F3AP6 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for H3F3AP6 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for H3F3AP6 Gene

Proteins for H3F3AP6 Gene

Post-translational modifications for H3F3AP6 Gene

No Post-translational modifications

No data available for DME Specific Peptides for H3F3AP6 Gene

Domains & Families for H3F3AP6 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for H3F3AP6 Gene

Function for H3F3AP6 Gene

Animal Model Products

miRNA for H3F3AP6 Gene

miRTarBase miRNAs that target H3F3AP6

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , Transcription Factor Targets and HOMER Transcription for H3F3AP6 Gene

Localization for H3F3AP6 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for H3F3AP6 Gene

Pathways & Interactions for H3F3AP6 Gene

SuperPathways for H3F3AP6 Gene

No Data Available

Interacting Proteins for H3F3AP6 Gene

Gene Ontology (GO) - Biological Process for H3F3AP6 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for H3F3AP6 Gene

Transcripts for H3F3AP6 Gene

mRNA/cDNA for H3F3AP6 Gene

(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for H3F3AP6 Gene

No ASD Table

Relevant External Links for H3F3AP6 Gene

GeneLoc Exon Structure for
H3F3AP6
ECgene alternative splicing isoforms for
H3F3AP6

Expression for H3F3AP6 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for H3F3AP6 Gene

mRNA differential expression in normal tissues according to GTEx for H3F3AP6 Gene

This gene is overexpressed in Whole Blood (x15.5).

NURSA nuclear receptor signaling pathways regulating expression of H3F3AP6 Gene:

H3F3AP6
genes like me logo Genes that share expression patterns with H3F3AP6: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners and mRNA Expression by UniProt/SwissProt for H3F3AP6 Gene

Orthologs for H3F3AP6 Gene

Evolution for H3F3AP6 Gene

ENSEMBL:
Gene Tree for H3F3AP6 (if available)
TreeFam:
Gene Tree for H3F3AP6 (if available)

No data available for Orthologs for H3F3AP6 Gene

Paralogs for H3F3AP6 Gene

No data available for Paralogs for H3F3AP6 Gene

Variants for H3F3AP6 Gene

Relevant External Links for H3F3AP6 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
H3F3AP6

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations from dbSNP and Humsavar , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for H3F3AP6 Gene

Disorders for H3F3AP6 Gene

No disorders were found for H3F3AP6 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for H3F3AP6 Gene

Publications for H3F3AP6 Gene

  1. The human histone H3 complement anno 2011. (PMID: 21782046) Ederveen T.H. … Logie C. (Biochim. Biophys. Acta 2011) 2 3 64
  2. Proteomic analysis of I+4I^1 integrin adhesion complexes reveals I+-subunit-dependent protein recruitment. (PMID: 22623428) Byron A. … Humphries M.J. (Proteomics 2012) 3 64
  3. Poly(ADP-ribosyl)ation directs recruitment and activation of an ATP-dependent chromatin remodeler. (PMID: 19666485) Gottschalk A.J. … Conaway R.C. (Proc. Natl. Acad. Sci. U.S.A. 2009) 3 64

Products for H3F3AP6 Gene

Sources for H3F3AP6 Gene

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