Set Analyses:
Advanced Search

Advanced Search

 
Search By
Section (entire)
for


 



H3F3AP4 Gene

pseudogene   GIFtS: 16
GCID: GC02P175586

H3 Histone, Family 3A, Pseudogene 4

  Search for H3F3AP4
at  

(According to 1HGNC, 2Entrez Gene,
3UniProtKB/Swiss-Prot, 4UniProtKB/TrEMBL, 5OMIM, 6GeneLoc, 7Ensembl, 8DME, 9miRBase, 10fRNAdb, 12H-InvDB, 13NCBI, 14NONCODE, and/or 15RNAdb)
About This Section

TryGeneCards Plus

Aliases
H3 Histone, Family 3A, Pseudogene 41 2
p132

External Ids:    HGNC: 429801   Entrez Gene: 4409262   Ensembl: ENSG000002356557   

Export aliases for H3F3AP4 gene to outside databases


(According to Entrez Gene, GeneCards, Tocris Bioscience, Wikipedia's Gene Wiki, PharmGKB,
UniProtKB/Swiss-Prot, and/or UniProtKB/TrEMBL)
About This Section

TryGeneCards Plus

GeneCards Summary for H3F3AP4 Gene:
H3F3AP4 (H3 histone, family 3A, pseudogene 4) is a pseudogene.


(According to GeneLoc and/or HGNC, and/or
Entrez Gene (NCBI build 37),
and/or miRBase,
Genomic Views according to UCSC (hg19) and Ensembl (release 75), Regulatory elements and Epigenetics data according to QIAGEN, and/or SwitchGear Genomics)
About This Section

TryGeneCards Plus
Regulatory elements:
   Search for regulatory transcription factor binding sites for H3F3AP4
         Other transcription factors

Browse SwitchGear Promoter luciferase reporter plasmids
   Search Chromatin IP Primers for H3F3AP4

Epigenetics:
DNA Methylation CpG Assay Predesigned for Pyrosequencing in human, mouse, rat H3F3AP4


Genomic Location:
Genomic View: UCSC Golden Path with GeneCards custom track

Entrez Gene cytogenetic band: 2q31.1   Ensembl cytogenetic band:  2q31.1   HGNC cytogenetic band: 2q31.1

H3F3AP4 Gene in genomic location: bands according to Ensembl, locations according to (and/or Entrez Gene and/or Ensembl if different)
H3F3AP4 gene location

GeneLoc information about chromosome 2         GeneLoc Exon Structure

GeneLoc location for GC02P175586:  view genomic region     (about GC identifiers)

Start:
175,584,505 bp from pter      End:
175,585,586 bp from pter
Size:
1,082 bases      Orientation:
plus strand

(According to 1UniProtKB, HORDE, 2neXtProt, Ensembl, and/or Reactome, Modification sites according to PhosphoSitePlus, Specific Peptides from DME, RefSeq according to NCBI, PDB rendering according to OCA and/or Proteopedia, Recombinant Proteins from EMD Millipore, R&D Systems, GenScript, Enzo Life Sciences, OriGene, Novus Biologicals, Sino Biological, ProSpec, and/or Cloud-Clone Corp.,
Biochemical Assays by EMD Millipore, R&D Systems, OriGene, GenScript, Cell Signaling Technology, Enzo Life Sciences, and/or Cloud-Clone Corp., Antibodies by EMD Millipore, R&D Systems, Cell Signaling Technology, OriGene, Novus Biologicals, Thermo Fisher Scientific, LSBio, Abcam, Cloud-Clone Corp, and/or others.)
About This Section

TryGeneCards Plus

UniProtKB: --


(According to HGNC, IUPHAR, InterPro, ProtoNet, UniProtKB, and/or BLOCKS, Sets of similar genes according to GeneDecks)
About This Section

TryGeneCards Plus
  --

(According to 1UniProtKB, Genatlas, LifeMap Discovery™, IUBMB, and/or 2DME, Human phenotypes from GenomeRNAi, Animal models from MGI Mar 06 2013, inGenious Targeting Laboratory, genOway,
transcription factor targeting from QIAGEN and/or HOMER, miRNA Gene Targets from miRTarBase, shRNA from OriGene, siRNAs from OriGene, QIAGEN, microRNA from QIAGEN, SwitchGear Genomics, Gene Editing from DNA2.0, Clones from OriGene, GenScript, Sino Biological, DNA2.0, and Vector BioLabs, Cell Lines from GenScript, ESI BIO, In Situ Hybridization Assays from Advanced Cell Diagnostics, Ontologies according to Gene Ontology Consortium 01 Apr 2014 via Entrez Gene.)
About This Section

TryGeneCards Plus

Animal Models:
   inGenious Targeting Laboratory: Let us create your new Knockout/Knockin mouse model for H3F3AP4
   inGenious Targeting Laboratory: Contact us about creating complex and humanized mouse models for H3F3AP4

   genOway customized KO model: permanent, tissue-specific or time-controlled inactivation for H3F3AP4
   genOway customized Knockin model: humanization, point mutation, expression monitoring, etc. for H3F3AP4

miRNA
Products:
    
Block miRNA regulation of human, mouse, rat H3F3AP4 using miScript Target Protectors
Search for qRT-PCR Assays for microRNAs that regulate H3F3AP4
Browse SwitchGear 3'UTR luciferase reporter plasmids
Inhib. RNA
Products:
    
OriGene RNAi products in human, mouse, rat for H3F3AP4
Predesigned siRNA for gene silencing in human, mouse, rat H3F3AP4

Gene Editing
Products:
DNA2.0 Custom Protein Engineering Service for H3F3AP4

Clone
Products:
     
Browse OriGene untagged/tagged cDNA clones in CMV expression vector
OriGene custom cloning services - gene synthesis, subcloning, mutagenesis, variant library, vector shuttling
GenScript Custom all cDNA clones Services for H3F3AP4
Browse Sino Biological Human cDNA Clones
DNA2.0 Custom Codon Optimized Gene Synthesis Service for H3F3AP4
Search Vector BioLabs for ready-to-use adenovirus/AAV for human, mouse, rat H3F3AP4

Cell Line
Products:
     
GenScript Custom overexpressing Cell Line Services for H3F3AP4
Browse ESI BIO Cell Lines and PureStem Progenitors for H3F3AP4 
In Situ Assay
Products:
   

 
Advanced Cell Diagnostics RNAscope RNA in situ hybridization assays for H3F3AP4


(According to UniProtKB, COMPARTMENTS Subcellular localization database, Ontologies according to Gene Ontology Consortium 01 Apr 2014 via Entrez Gene.)
About This Section

TryGeneCards Plus
  --

(SuperPaths according to PathCards, Pathways according to R&D Systems, Cell Signaling Technology, KEGG, PharmGKB, BioSystems, Sino Biological, Reactome, Tocris Bioscience, GeneGo (Thomson Reuters), QIAGEN, and/or UniProtKB, Sets of similar genes according to GeneDecks, Interaction Networks according to QIAGEN, and/or STRING, Interactions according to 1UniProtKB, 2MINT, 3I2D, and/or 4STRING, with links to IntAct and Ensembl, Ontologies according to Gene Ontology Consortium 01 Apr 2014 via Entrez Gene).
About This Section

TryGeneCards Plus



    Custom Pathway & Disease-focused RT2 Profiler PCR Arrays for H3F3AP4
Interactions:

    Search GeneGlobe Interaction Network for H3F3AP4

(Chemical Compounds according to UniProtKB, Enzo Life Sciences, EMD Millipore, Tocris Bioscience, ApexBio, HMDB, BitterDB, and/or Novoseek, Ligands according to IUPHAR, and Drugs according to DrugBank, Enzo Life Sciences, and/or PharmGKB)
About This Section

TryGeneCards Plus
Browse Small Molecules at EMD Millipore
   Browse drugs & compounds from Enzo Life Sciences
  Browse compounds at ApexBio 

Browse Tocris compounds for H3F3AP4



(Secondary structures according to fRNAdb,
GenBank/EMBL/DDBJ Accessions according to
Unigene (Build 236 Homo sapiens; Apr 25 2013) or GenBank,
RefSeq according to Entrez Gene,
DOTS (version 10), and/or AceView, transcript ids from Ensembl with links to UCSC,
exon structure from GeneLoc, alternative splicing isoforms according to ASD and/or ECgene,
siRNAs from OriGene, QIAGEN, shRNA from OriGene, microRNA from QIAGEN, SwitchGear Genomics,
Tagged/untagged cDNA clones from OriGene, GenScript, DNA2.0, Vector BioLabs, Primers from OriGene, and/or QIAGEN )
About This Section

TryGeneCards Plus

2 Ensembl transcripts including schematic representations, and UCSC links where relevant:
ENST00000369387 ENST00000316450
miRNA
Products:
     
Block miRNA regulation of human, mouse, rat H3F3AP4 using miScript Target Protectors
Search for qRT-PCR Assays for microRNAs that regulate H3F3AP4
Browse SwitchGear 3'UTR luciferase reporter plasmids
Inhib. RNA
Products:
     
OriGene RNAi products in human, mouse, rat for H3F3AP4
Predesigned siRNA for gene silencing in human, mouse, rat H3F3AP4
Clone
Products:
     
Browse OriGene untagged/tagged cDNA clones in CMV expression vector
OriGene custom cloning services - gene synthesis, subcloning, mutagenesis, variant library, vector shuttling
GenScript Custom all cDNA clones Services for H3F3AP4
DNA2.0 Custom Codon Optimized Gene Synthesis Service for H3F3AP4
Search Vector BioLabs for ready-to-use adenovirus/AAV for human, mouse, rat H3F3AP4
Primer
Products:
    
OriGene qSTAR qPCR primer pairs in human, mouse for H3F3AP4
Search Pre-validated RT2 qPCR Primer Assays in human, mouse, rat H3F3AP4
  QuantiTect SYBR Green Assays in human, mouse, rat H3F3AP4
  QuantiFast Probe-based Assays in human, mouse, rat H3F3AP4

Selected AceView cDNA sequences (see all 1153):

CR620119 BM887975 BE255869 AI760540 BM850727 AW166433 AI394474 D56631 
N22116 D55756 AI452956 BE900469 CR604105 AI075128 AW510498 F30313 
BM264265 H88525 BM974366 BM873647 CA395150 BQ416775 AI139939 CR625697 

GeneLoc Exon Structure


(RNA expression data according to H-InvDB, NONCODE, miRBase, and RNAdb, Expression images according to data from BioGPS, Illumina Human BodyMap, and CGAP SAGE, Sets of similar genes according to GeneDecks, in vivo and in vitro expression data from LifeMap Discovery™, Protein expression images according to data from SPIRE 1MOPED, 2PaxDb, and 3MaxQB, plus additional links to SOURCE, and/or BioGPS, and/or UniProtKB,
PCR Arrays from QIAGEN, Primers from OriGene, and/or QIAGEN, In Situ Hybridization Assays from Advanced Cell Diagnostics)
About This Section

TryGeneCards Plus

H3F3AP4 expression in normal human tissues (normalized intensities)
See probesets specificity/sensitivity at GeneAnnot
About this imageBioGPS <intensity>2/3
CGAP TAG: --
H3F3AP4 Expression
About this image

H3F3AP4 Protein expression data from MOPED1, PaxDb2 and MaxQB3 --
    Custom PCR Arrays for H3F3AP4
Primer
Products:
OriGene qSTAR qPCR primer pairs in human, mouse for H3F3AP4
Search Pre-validated RT2 qPCR Primer Assays in human, mouse, rat H3F3AP4
QuantiTect SYBR Green Assays in human, mouse, rat H3F3AP4
QuantiFast Probe-based Assays in human, mouse, rat H3F3AP4
In Situ
Assay Products:
 

 
Advanced Cell Diagnostics RNAscope RNA in situ hybridization assays for H3F3AP4

(Orthologs according to 1,2HomoloGene (2older version, for species not in 1newer version), 3euGenes, 4SGD , 5MGI Mar 06 2013, with possible further links to Flybase and/or WormBase, and/or 6Ensembl pan taxonomic compara , Gene Trees according to Ensembl and TreeFam)
About This Section

TryGeneCards Plus
  --

ENSEMBL Gene Tree for H3F3AP4 (if available)
TreeFam Gene Tree for H3F3AP4 (if available)

(Paralogs according to 1HomoloGene,
2Ensembl, and 3SIMAP, Pseudogenes according to 4Pseudogene.org Build 68)
About This Section

TryGeneCards Plus
  --

(SNPs/Variants according to the 1NCBI SNP Database, 2Ensembl, 3PupaSUITE, 4UniProtKB, and DNA2.0, Linkage Disequilibrium by HapMap, Structural Variations(CNVs/InDels/Inversions) from the Database of Genomic Variants, Mutations from the Human Gene Mutation Database (HGMD), the Human Cytochrome P450 Allele Nomenclature Database, and the Locus Specific Mutation Databases (LSDB), Blood group antigen gene mutations by BGMUT, Resequencing Primers, Cancer Mutation PCR Arrays and Assays, and Copy Number PCR Arrays from QIAGEN)
About This Section

TryGeneCards Plus

Selected SNPs for H3F3AP4 (see all 76)    About this table    
Genomic DataTranscription Related DataAllele Frequencies
SNP IDValidClinical
significance
Chr 2 posSequence#AA
Chg
TypeMore#Allele
freq
PopTotal
sample
More
----------
rs1427718701,2
--175582675(+) TTAAAA/CAACCT 1 -- us2k10--------
rs1899205381,2
--175582720(+) TATTAA/TCCCAC 1 -- us2k10--------
rs1813631261,2
--175582882(+) CCCACA/GTGGCC 1 -- us2k10--------
rs739733661,2
C,F--175582888(+) TGGCCG/ACAGGC 1 -- us2k12Minor allele frequency- A:0.04WA 120
rs1448329021,2
C--175582916(+) CACCAC/TCAGGG 1 -- us2k10--------
rs130323471,2
C,F,A--175582954(+) TCACAT/ACATGG 1 -- us2k14Minor allele frequency- A:0.19NA 126
rs130059581,2
C,F,A,H--175582978(+) ATGGAA/GTGAGT 1 -- us2k18Minor allele frequency- G:0.09NS EA NA 544
rs26461951,2
C,H--175583016(+) CTTCAG/AAAGCC 1 -- us2k117Minor allele frequency- A:0.01NS EA NA WA CSA 792
rs1856343011,2
--175583068(+) GTTCAA/GTGAGG 1 -- us2k10--------
rs359873511,2
C--175583158(+) ATATCC/ATGGCA 1 -- us2k14Minor allele frequency- A:0.20NA 126

HapMap Linkage Disequilibrium report for H3F3AP4 (175584505 - 175585586 bp)

Structural Variations
      Database of Genomic Variants (DGV) variations for H3F3AP4: --
Site Specific Mutation Identification with PCR Assays
Search QIAGEN SeqTarget long-range PCR primers for resequencing H3F3AP4
DNA2.0 Custom Variant and Variant Library Synthesis for H3F3AP4

(in which this Gene is Involved, According to MalaCards, OMIM, UniProtKB, the University of Copenhagen DISEASES database, Genatlas, GeneTests, GAD, HuGE Navigator, and/or TGDB.)
About This Section

TryGeneCards Plus
  --

(in PubMed. Associations of this gene to articles via 1Entrez Gene, 2UniProtKB/Swiss-Prot, 3HGNC, 4GAD, 5PharmGKB, 6HMDB, 7DrugBank, 8UniProtKB/TrEMBL, 9 Novoseek, and/or 10fRNAdb)
About This Section

TryGeneCards Plus

PubMed articles for H3F3AP4 gene integrated from 10 sources:
(articles sorted by number of sources associating them with H3F3AP4)
    Utopia: connect your pdf to the dynamic
world of online information

  1. The human histone H3 complement anno 2011. (PubMed id 21782046)1, 3 Ederveen T.H....Logie C. (Biochim. Biophys. Acta 2011)
  2. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PubMed id 12477932)1 Strausberg R.L....Marra M.A. (Proc. Natl. Acad. Sci. U.S.A. 2002)
  3. Unusual structure, evolutionary conservation of non-coding sequences and numerous pseudogenes characterize the human H3.3 histone multigene family. (PubMed id 3031613)1 Wells D.... Kedes L. (Nucleic Acids Res. 1987)

(in PubMed, OMIM, and NCBI Bookshelf)
About This Section

TryGeneCards Plus
 ANDOR
Aliases
Free Text  

  Query String
PubMed
OMIM
NCBI Bookshelf
  (Note: In FireFox, select the above section and copy using Ctrl-C)

(According to Entrez Gene, HGNC, AceView, euGenes, Ensembl, miRBase, ECgene, Kegg, and/or H-InvDB)
About This Section

TryGeneCards Plus
Entrez Gene: 440926 HGNC: 42980 AceView: LOC440926 Ensembl:ENSG00000235655 euGenes: HUgn440926
ECgene: H3F3AP4 H-InvDB: H3F3AP4

(According to HUGE)
About This Section

TryGeneCards Plus
  --

(According to PharmGKB, ATLAS, HORDE, IMGT, LEIDEN, UniProtKB/Swiss-Prot, UniProtKB/TrEMBL, and/or others, e.g. Wikipedia and GeneReviews, via UniProtKB/Swiss-Prot)
About This Section

TryGeneCards Plus
  --

(Patent information from GeneIP,
Licensable technologies from WIS Yeda, Salk, Tufts,
IP news from LifeMap Sciences, Inc.)
About This Section

TryGeneCards Plus
Patent Information for H3F3AP4 gene:
Search GeneIP for patents involving H3F3AP4

GeneCards and IP:
Japan Patent Office Licenses GeneCards     European Patent Office Licenses GeneCards     Improving the IP Search



(Antibodies, recombinant proteins, and assays from EMD Millipore, R&D Systems, OriGene, QIAGEN, GenScript, Cell Signaling Technology, Novus Biologicals, Sino Biological, Enzo Life Sciences, Abcam, ProSpec, Cloud-Clone Corp., Thermo Fisher Scientific, LSBio, Gene Editing from DNA2.0. Clones from OriGene, GenScript, Sino Biological, DNA2.0, SwitchGear Genomics, Vector BioLabs, Cell lines from GenScript, and ESI BIO, PCR Arrays from QIAGEN, Drugs and/or compounds from EMD Millipore, Tocris Bioscience, Enzo Life Sciences, and/or ApexBio, In Situ Hybridization Assays from
Advanced Cell Diagnostics, Animal models from inGenious Targeting Laboratory, genOway)
About This Section

TryGeneCards Plus

 
 EMD Millipore genomic analysis products

  
 Browse Antibodies   Browse Cell Culture Products  
 Browse ELISAs   Browse Flow Cytometry Kits  
 Browse Primer Pairs   Browse Enzyme Activity Assays/Reagents  
 Browse ELISpot/FluoroSpot Kits/Development Modules   Browse TFB/Immunoprecipitation Assays  
 Browse Apoptosis Detection Kits/Reagents   Browse Ubiquitin Proteasome Pathway (UPP) Assay Kits/Reagents  
 Browse DNA Damage/Repair Kits/Reagents   Browse Luminex Assays  
 Browse Cell Selection/Detection Kits/Reagents   Browse Secondary Antibodies/Controls/Staining Reagents  
 Browse Recombinant/Natural Proteins   Browse Stem Cell Products  
 Browse cDNA Clones   Browse Proteome Profiler Antibody Arrays  
 Browse OriGene Antibodies   OriGene RNAi products in human, mouse, rat for H3F3AP4  
 Browse OriGene qPCR primer pairs and template standards   Browse OriGene Protein Over-expression Lysates  
 OriGene Custom Mass Spec   Browse OriGene clones  
 OriGene qSTAR qPCR primer pairs in human, mouse for H3F3AP4   Browse OriGene full length recombinant human proteins expressed in human HEK293 cells  
 Browse OriGene ORF clones   OriGene custom cloning services - gene synthesis, subcloning, mutagenesis, variant library, vector shuttling  
 OriGene Custom Antibody Services for H3F3AP4   OriGene Custom Protein Services for H3F3AP4  

 
 
 Block miRNA regulation of human, mouse, rat H3F3AP4 using miScript Target Protectors SeqTarget long-range PCR primers for resequencing H3F3AP4
 DNA Methylation CpG Assay Predesigned for Pyrosequencing in human, mouse, rat H3F3AP4 Predesigned siRNA for gene silencing in human, mouse, rat H3F3AP4
 QuantiFast Probe-based Assays in human, mouse, rat H3F3AP4 QuantiTect SYBR Green Assays in human, mouse, rat H3F3AP4
 Custom PCR Arrays for H3F3AP4 Search Chromatin IP Primers for H3F3AP4
 Search Pre-validated RT2 qPCR Primer Assays in human, mouse, rat H3F3AP4 Search GeneGlobe Interaction Network for H3F3AP4
 Search Regulatory tfbs for H3F3AP4
 GenScript Custom Purified and Recombinant Proteins Services for H3F3AP4 GenScript Custom cDNA clones with any tag delivered in your preferred vector Services for H3F3AP4
 GenScript Custom Assay Services for H3F3AP4 GenScript Custom overexpressing Cell Line Services for H3F3AP4
 CloneReady with Over 120,000 Genes  Gene Synthesis: Any Gene in Any Vector
 Vector-based siRNA and miRNA, Ready for Transfection Gene Mutant Library, Variants up to 10^11
 Plasmid Preparation Custom Peptide Services
 Search for Antibodies & Assays

 Search Tocris compounds for H3F3AP4
 Browse Sino Biological Proteins
 Browse Sino Biological Cell Lysates
 Browse Sino Biological cDNA Clones
 4000+ Proteins
 Search Sino Biological for antibodies, proteins & pathways
 Protein Production Services
 Transfection Reagents
 Protein A/G/L resins
 Isotyping reagents
 Search www.enzolifesciences.com for proteins, assays, substrates, inhibitors & antibodies

 Novus Biologicals
 Novus Tissue Slides
 Search for Antibodies for H3F3AP4 at Abcam
 See all of Abcam's Antibodies, Kits and Proteins for H3F3AP4
 Custom Antibody / Protein Production Service
 Bulk Purchasing
 Advantages of Rabbit Monoclonal antibodies
 Abcam protocols and scientific support
 Browse ProSpec Recombinant Proteins
 Browse Proteins at Cloud-Clone Corp.
 Browse Antibodies at Cloud-Clone Corp.
 Browse ELISAs at Cloud-Clone Corp.
 Browse CLIAs at Cloud-Clone Corp.



 Browse ESI BIO Cell Lines and PureStem Progenitors for H3F3AP4
 Gene Synthesis
 Protein Engineering
 Variant Library Synthesis
 Codon Optimization
 Protein Production and Purification
 Advanced Cell Diagnostics RNAscope RNA in situ hybridization assays for H3F3AP4
 Browse SwitchGear 3'UTR luciferase reporter plasmids for H3F3AP4
 Browse SwitchGear Promoter luciferase reporter plasmids for H3F3AP4
 Search ThermoFisher Antibodies for H3F3AP4
 Search Vector BioLabs for ready-to-use adenovirus/AAV for human, mouse, rat H3F3AP4
 inGenious Targeting Laboratory: Let us create your new Knockout/Knockin mouse model for H3F3AP4
 inGenious Targeting Laboratory: Contact us about creating complex and humanized mouse models for H3F3AP4
 Search LSBio for Antibodies for H3F3AP4
Customized transgenic rodents for:
 Humanization
 Biomarker expression
 Off-target effect monitoring
 Translational medicine
 Tissue-specific gene expresssion
 Time-controlled gene expresssion
 Browse compounds at ApexBio
       
GeneCards Homepage - Last full update: 7 May 2014 - Incrementals: 9 May 2014 , 2 Jun 2014 , 26 Jun 2014 , 30 Jun 2014

View Random Gene

Category
(GIFtS: )
GIFtS Group
The GeneCards human gene database gene index: 1 3 5 A B C D E F G H I J K L M N O P Q R S T U V W X Y Z 


Developed at the Crown Human Genome Center, Department of Molecular Genetics, the Weizmann Institute of Science

Hot genes      Disease genes      H3F3AP4 gene at Home site.
Version: 3.12.166 28 Aug 2014
hostname: 356980-web2.xennexinc.com index build: 126 solr: 1.4