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Aliases for H3F3AP4 Gene

Aliases for H3F3AP4 Gene

  • H3 Histone, Family 3A, Pseudogene 4 2 3 5
  • H3 Histone, Family 3A Pseudogene 3
  • P13 3

External Ids for H3F3AP4 Gene

Previous GeneCards Identifiers for H3F3AP4 Gene

  • GC02P175586

Summaries for H3F3AP4 Gene

GeneCards Summary for H3F3AP4 Gene

H3F3AP4 (H3 Histone, Family 3A, Pseudogene 4) is a Pseudogene.

No data available for Entrez Gene Summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for H3F3AP4 Gene

Genomics for H3F3AP4 Gene

Regulatory Elements for H3F3AP4 Gene

Enhancers for H3F3AP4 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH02F175580 0.5 Ensembl 4.7 +861.1 861101 0.2 H3F3AP4 GC02P175563 GC02P175686 PIR35160
GH02F174717 0.5 Ensembl 0.8 -2.3 -2300 0.6 CHRNA1 WIPF1 H3F3AP4
GH02F174729 0.9 Ensembl ENCODE 0.4 +10.4 10401 0.8 CTCF L3MBTL2 NRF1 NFYC KMT2B CBX8 RAD51 IKZF1 MBD1 KDM1A ENSG00000236449 CHRNA1 WIPF1 CHN1 H3F3AP4 LOC105373750
GH02F174748 0.5 ENCODE 0.3 +29.3 29278 0.2 CTCF ZNF654 HLF TEAD4 TRIM22 ZEB2 RAD21 JUND ZNF143 CREB1 CHN1 WIPF1 H3F3AP4 LOC105373750
GH02F174697 0.4 ENCODE 0.3 -22.4 -22403 0.1 CTCF ZNF654 TRIM22 REST RAD21 SMC3 ZNF143 FOXP2 CREM WIPF1 H3F3AP4
- Elite enhancer/Elite enhancer-gene association Download Table
Download GeneHancer data dump

Enhancers around H3F3AP4 on UCSC Golden Path with GeneCards custom track

Promoters for H3F3AP4 Gene
Ensembl Regulatory Elements (ENSRs) TSS Distance (bp) Size (bp) Binding Sites for Transcription Factors within promoters
ENSR00001829779 300 600 ZBTB33

Genomic Location for H3F3AP4 Gene

Chromosome:
2
Start:
174,719,800 bp from pter
End:
174,720,858 bp from pter
Size:
1,059 bases
Orientation:
Plus strand

Genomic View for H3F3AP4 Gene

Genes around H3F3AP4 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
H3F3AP4 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for H3F3AP4 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for H3F3AP4 Gene

Proteins for H3F3AP4 Gene

Post-translational modifications for H3F3AP4 Gene

No Post-translational modifications

No data available for DME Specific Peptides for H3F3AP4 Gene

Domains & Families for H3F3AP4 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for H3F3AP4 Gene

Function for H3F3AP4 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for H3F3AP4 Gene

Localization for H3F3AP4 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for H3F3AP4 Gene

Pathways & Interactions for H3F3AP4 Gene

SuperPathways for H3F3AP4 Gene

No Data Available

Interacting Proteins for H3F3AP4 Gene

Gene Ontology (GO) - Biological Process for H3F3AP4 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for H3F3AP4 Gene

Transcripts for H3F3AP4 Gene

mRNA/cDNA for H3F3AP4 Gene

Alternative Splicing Database (ASD) splice patterns (SP) for H3F3AP4 Gene

No ASD Table

Relevant External Links for H3F3AP4 Gene

GeneLoc Exon Structure for
H3F3AP4
ECgene alternative splicing isoforms for
H3F3AP4

Expression for H3F3AP4 Gene

mRNA expression in normal human tissues for H3F3AP4 Gene

mRNA differential expression in normal tissues according to GTEx for H3F3AP4 Gene

This gene is overexpressed in Whole Blood (x13.8).

NURSA nuclear receptor signaling pathways regulating expression of H3F3AP4 Gene:

H3F3AP4
genes like me logo Genes that share expression patterns with H3F3AP4: view

Primer Products

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners and mRNA Expression by UniProt/SwissProt for H3F3AP4 Gene

Orthologs for H3F3AP4 Gene

Evolution for H3F3AP4 Gene

ENSEMBL:
Gene Tree for H3F3AP4 (if available)
TreeFam:
Gene Tree for H3F3AP4 (if available)

No data available for Orthologs for H3F3AP4 Gene

Paralogs for H3F3AP4 Gene

No data available for Paralogs for H3F3AP4 Gene

Variants for H3F3AP4 Gene

Sequence variations from dbSNP and Humsavar for H3F3AP4 Gene

SNP ID Clin Chr 02 pos Sequence Context AA Info Type
rs10183636 -- 174,720,888(+) CATTT(G/T)TGTGT downstream-variant-500B
rs10930683 -- 174,719,251(+) CGATA(A/T)GTAAT upstream-variant-2KB
rs111651551 -- 174,720,886(+) CACAT(G/T)TGTGT downstream-variant-500B
rs112638177 -- 174,720,335(+) GATGG(A/G)AAACA nc-transcript-variant
rs112662182 -- 174,720,367(+) AAAAA(A/T)TTCTC nc-transcript-variant

Structural Variations from Database of Genomic Variants (DGV) for H3F3AP4 Gene

Variant ID Type Subtype PubMed ID
esv3575313 CNV gain 25503493
esv3589008 CNV gain 21293372
nsv1012645 CNV loss 25217958
nsv459948 CNV loss 19166990
nsv470500 CNV loss 18288195
nsv583668 CNV loss 21841781
nsv832747 CNV gain 17160897
nsv945330 CNV duplication 23825009
nsv952128 CNV duplication 24416366
nsv961910 CNV duplication 23825009

Relevant External Links for H3F3AP4 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
H3F3AP4

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for H3F3AP4 Gene

Disorders for H3F3AP4 Gene

Relevant External Links for H3F3AP4

Atlas of Genetics and Cytogenetics in Oncology and Haematology:
H3F3AP4

No disorders were found for H3F3AP4 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for H3F3AP4 Gene

Publications for H3F3AP4 Gene

  1. The human histone H3 complement anno 2011. (PMID: 21782046) Ederveen T.H. … Logie C. (Biochim. Biophys. Acta 2011) 2 3 64
  2. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg R.L. … Marra M.A. (Proc. Natl. Acad. Sci. U.S.A. 2002) 3 64
  3. Unusual structure, evolutionary conservation of non-coding sequences and numerous pseudogenes characterize the human H3.3 histone multigene family. (PMID: 3031613) Wells D. … Kedes L. (Nucleic Acids Res. 1987) 3 64

Products for H3F3AP4 Gene

Sources for H3F3AP4 Gene

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