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Aliases for H3.X Gene

Subcategory (RNA class) for H3.X Gene


Aliases for H3.X Gene

  • Histone Cluster 2, H3d Pseudogene 3
  • RP11-321E2.13 5

External Ids for H3.X Gene

ORGUL Members for H3.X Gene

Summaries for H3.X Gene

GeneCards Summary for H3.X Gene

H3.X (Histone Cluster 2, H3d Pseudogene) is a Pseudogene, and is affiliated with the lncRNA class.

No data available for Entrez Gene Summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for H3.X Gene

Genomics for H3.X Gene

Regulatory Elements for H3.X Gene

Enhancers for H3.X Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH05F017301 1.7 FANTOM5 Ensembl ENCODE 16.2 +187.1 187056 5.6 PKNOX1 SIN3A FEZF1 ZNF2 YY1 ZNF302 ZNF416 FOS DEK SP3 LINC02111 ENSG00000248223 ENSG00000249199 ENSG00000250667 H3.X LOC391744 BASP1 LOC646012 RNU6-1003P
GH05F017398 1.5 FANTOM5 Ensembl ENCODE 16.3 +91.2 91166 5.2 ATF1 FEZF1 RAD21 ZNF335 ZNF766 SCRT2 FOS CREM ZNF362 CEBPB LINC02111 ENSG00000249199 ENSG00000248223 H3.X ENSG00000250667 LOC391744 LOC101929544 BASP1
GH05F016883 1.3 Ensembl ENCODE 16.2 +604.2 604232 8.3 GLI4 FEZF1 YBX1 ZNF2 ZNF121 KLF7 FOS DEK ZNF263 SP3 ENSG00000249199 ENSG00000248223 LINC02111 H3.X ENSG00000250667 LOC391744 NACAP6 GC05P016901 RNA5SP179
GH05F016930 1.1 ENCODE 16.2 +557.6 557551 6.9 PKNOX1 SIN3A FEZF1 GLI4 BRCA1 ZNF2 ZNF121 GLIS2 ZNF143 KLF7 LINC02111 ENSG00000248223 ENSG00000249199 H3.X LOC391744 ENSG00000250667 NACAP6 MYO10 GC05P016917 GC05P016918
GH05F016733 1.4 FANTOM5 ENCODE 6.6 +755.5 755521 6.0 PKNOX1 ATF1 MLX ZNF133 ARID4B FEZF1 DMAP1 ZNF48 YY1 ZNF766 H3.X GC05M016744 PIR50692 GC05P016661
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around H3.X on UCSC Golden Path with GeneCards custom track

Genomic Location for H3.X Gene

17,491,361 bp from pter
17,491,769 bp from pter
409 bases
Minus strand

Genomic View for H3.X Gene

Genes around H3.X on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
H3.X Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for H3.X Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for H3.X Gene

Proteins for H3.X Gene

Post-translational modifications for H3.X Gene

No Post-translational modifications

No data available for DME Specific Peptides for H3.X Gene

Domains & Families for H3.X Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for H3.X Gene

Function for H3.X Gene

Phenotypes for H3.X Gene

genes like me logo Genes that share phenotypes with H3.X: view

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for H3.X Gene

Localization for H3.X Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for H3.X Gene

Pathways & Interactions for H3.X Gene

No Data Available

Interacting Proteins for H3.X Gene

Gene Ontology (GO) - Biological Process for H3.X Gene


No data available for Pathways by source and SIGNOR curated interactions for H3.X Gene

Transcripts for H3.X Gene

mRNA/cDNA for H3.X Gene

(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for H3.X Gene

No ASD Table

Relevant External Links for H3.X Gene

GeneLoc Exon Structure for

Expression for H3.X Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for H3.X Gene

mRNA differential expression in normal tissues according to GTEx for H3.X Gene

This gene is overexpressed in Testis (x33.1) and Whole Blood (x12.9).
genes like me logo Genes that share expression patterns with H3.X: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners and mRNA Expression by UniProt/SwissProt for H3.X Gene

Orthologs for H3.X Gene

Evolution for H3.X Gene

Gene Tree for H3.X (if available)
Gene Tree for H3.X (if available)

No data available for Orthologs for H3.X Gene

Paralogs for H3.X Gene

No data available for Paralogs for H3.X Gene

Variants for H3.X Gene

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations from dbSNP and Humsavar , Structural Variations from Database of Genomic Variants (DGV) , Variation tolerance and Relevant External Links for H3.X Gene

Disorders for H3.X Gene

No disorders were found for H3.X Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for H3.X Gene

Publications for H3.X Gene

  1. A comprehensive view of the epigenetic landscape part I: DNA methylation, passive and active DNA demethylation pathways and histone variants. (PMID: 25362550) Sadakierska-Chudy A. … Filip M. (Neurotox Res 2015) 3 64
  2. The double face of the histone variant H3.3. (PMID: 21263457) Szenker E. … Almouzni G. (Cell Res. 2011) 3 64
  3. Identification and characterization of two novel primate-specific histone H3 variants, H3.X and H3.Y. (PMID: 20819935) Wiedemann S.M. … Hake S.B. (J. Cell Biol. 2010) 3 64

Products for H3.X Gene

Sources for H3.X Gene

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