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Aliases for H3.X Gene

Subcategory (RNA class) for H3.X Gene

lncRNA

Aliases for H3.X Gene

  • Histone Cluster 2, H3d Pseudogene 3
  • AC106774.4 5

External Ids for H3.X Gene

ORGUL Members for H3.X Gene

Summaries for H3.X Gene

GeneCards Summary for H3.X Gene

H3.X (Histone Cluster 2, H3d Pseudogene) is a Pseudogene, and is affiliated with the lncRNA class.

Additional gene information for H3.X Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for H3.X Gene

Genomics for H3.X Gene

GeneHancer (GH) Regulatory Elements for H3.X Gene

Promoters and enhancers for H3.X Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH05I016733 Enhancer 1.6 FANTOM5 Ensembl ENCODE dbSUPER 6.7 +755.5 755520 6 FOXA2 ZNF133 ARID4B SIN3A FEZF1 DMAP1 ZNF48 ETS1 YY1 ZNF766 H3.X GC05M016744 PIR50692 GC05M016667 GC05P016661 MYO10
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data dump

GeneHancers around H3.X on UCSC Golden Path with GeneCards custom track

Genomic Locations for H3.X Gene

Genomic Locations for H3.X Gene
chr5:17,491,361-17,491,769
(GRCh38/hg38)
Size:
409 bases
Orientation:
Minus strand
chr5:17,491,467-17,491,878
(GRCh37/hg19)

Genomic View for H3.X Gene

Genes around H3.X on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
H3.X Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for H3.X Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for H3.X Gene

Proteins for H3.X Gene

Post-translational modifications for H3.X Gene

No Post-translational modifications

No data available for DME Specific Peptides for H3.X Gene

Domains & Families for H3.X Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for H3.X Gene

Function for H3.X Gene

Phenotypes for H3.X Gene

genes like me logo Genes that share phenotypes with H3.X: view

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for H3.X Gene

Localization for H3.X Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for H3.X Gene

Pathways & Interactions for H3.X Gene

No Data Available

Interacting Proteins for H3.X Gene

Gene Ontology (GO) - Biological Process for H3.X Gene

None

No data available for Pathways by source and SIGNOR curated interactions for H3.X Gene

Drugs & Compounds for H3.X Gene

No Compound Related Data Available

Expression for H3.X Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for H3.X Gene

mRNA differential expression in normal tissues according to GTEx for H3.X Gene

This gene is overexpressed in Testis (x33.1) and Whole Blood (x12.9).
genes like me logo Genes that share expression patterns with H3.X: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for H3.X Gene

Orthologs for H3.X Gene

Evolution for H3.X Gene

ENSEMBL:
Gene Tree for H3.X (if available)
TreeFam:
Gene Tree for H3.X (if available)

No data available for Orthologs for H3.X Gene

Paralogs for H3.X Gene

No data available for Paralogs for H3.X Gene

Variants for H3.X Gene

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations from dbSNP and Humsavar , Structural Variations from Database of Genomic Variants (DGV) , Variation tolerance and Additional Variant Information for H3.X Gene

Disorders for H3.X Gene

No disorders were found for H3.X Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for H3.X Gene

Publications for H3.X Gene

  1. A comprehensive view of the epigenetic landscape part I: DNA methylation, passive and active DNA demethylation pathways and histone variants. (PMID: 25362550) Sadakierska-Chudy A … Filip M (Neurotoxicity research 2015) 3 58
  2. The double face of the histone variant H3.3. (PMID: 21263457) Szenker E … Almouzni G (Cell research 2011) 3 58
  3. Identification and characterization of two novel primate-specific histone H3 variants, H3.X and H3.Y. (PMID: 20819935) Wiedemann SM … Hake SB (The Journal of cell biology 2010) 3 58

Products for H3.X Gene

Sources for H3.X Gene

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