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Aliases & Descriptions for H2AFV
(According to
1 HGNC ,
2 Entrez Gene ,
3 UniProtKB/Swiss-Prot ,
4 UniProtKB/TrEMBL , 5 OMIM , 6 GeneLoc
, and/or 7 Ensembl ,
8 miRBase )About This Section
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Aliases FLJ26479 2 H2A.F/Z 3 H2AV 2 , 3 MGC10170 1 , 2 MGC10831 1 , 2 MGC1947 1 , 2
Descriptions H2A histone family, member V 2 histone H2A.F/Z 2 purine-rich binding element protein B 2
Search outside databases for aliases for H2AFV genePrevious GC identifers: GC07M044610 GC07M044642
Summaries for H2AFV (According to Entrez Gene ,
Wikipedia's
Gene Wiki ,
UniProtKB/Swiss-Prot ,
and/or
UniProtKB/TrEMBL )
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EntrezGene summary for H2AFV : Histones are basic nuclear proteins that are responsible for the nucleosome structure of thechromosomal fiber in eukaryotes. Nucleosomes consist of approximately 146 bp of DNA wrapped arounda histone octamer composed of pairs of each of the four core histones (H2A, H2B, H3, and H4). Thechromatin fiber is further compacted through the interaction of a linker histone, H1, with the DNAbetween the nucleosomes to form higher order chromatin structures. This gene encodes a member ofthe histone H2A family. Several transcript variants encoding different isoforms, have beenidentified for this gene. [provided by RefSeq] UniProtKB/Swiss-Prot: H2AV_HUMAN, Q71UI9 Function : Variant histone H2A which replaces conventional H2A in a subset of nucleosomes.Nucleosomes wrap and compact DNA into chromatin, limiting DNA accessibility to the cellularmachineries which require DNA as a template. Histones thereby play a central role in transcriptionregulation, DNA repair, DNA replication and chromosomal stability. DNA accessibility is regulatedvia a complex set of post-translational modifications of histones, also called histone code, andnucleosome remodeling. May be involved in the formation of constitutive heterochromatin. May berequired for chromosome segregation during cell division (By similarity)
Gene Wiki entry for H2AFV
Genomic Location for H2AFV
(According to
GeneLoc and/or
HGNC , and/or
Entrez Gene (NCBI build 36) ,
and/or miRBase ,
Genomic Views according to
UCSC and
Ensembl ,
Transcription factor binding sites according to
SABiosciences )About This Section
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Genomic View : UCSC Golden Path with GeneCards custom track Transcription factor binding sites upstream to the H2AFV gene Entrez Gene cytogenetic band: 7p13 Ensembl cytogenetic band: 7p13 HGNC cytogenetic band: 7p13 H2AFV Gene in genomic location: bands according to Ensembl, locations according to
(and/or Entrez Gene and/or Ensembl if different) GeneLoc gene densities for chromosome 7 GeneLoc Exon Structure
GeneLoc location for GC07M044833:
(about GC identifiers )
Start:
44,833,013 bp from pter
End:
44,854,255 bp from pter
Size:
21,243 bases
Orientation:
minus strand
1 alternative location : Chr 7-,CRA_TCAG 44,905,993-44,927,227
RefSeq DNA sequence: NC_000007.12 NT_007819.16 NT_079592.2 Proteins for H2AFV
(According to
1 UniProtKB ,
and/or Ensembl ,
Phosphorylation sites according to 2 Phosphosite ,
RefSeq according to NCBI ,
PDB rendering according to OCA and/or Proteopedia ,
Recombinant Proteins
from Invitrogen ,
Millipore ,
Sigma-Aldrich ,
R&D Systems ,
Enzo Life Sciences ,
Abnova ,
OriGene and/or,
Abcam ,
Biochemical Assays by
Invitrogen ,
Millipore ,
R&D Systems ,
Cell Signaling Technology , and/or
Enzo Life Sciences ,
Ontologies according to Gene
Ontology Consortium 01 Apr 2009 and
Entrez Gene ,
Antibodies by Invitrogen ,
Millipore ,
Sigma-Aldrich ,
R&D Systems ,
Cell Signaling Technology ,
Abcam ,
Abnova , and/or
Novus Biologicals )
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UniProtKB/Swiss-Prot: H2AV_HUMAN, Q71UI9 (See
protein sequence )Recommended Name: Histone H2A.V Size : 128 amino acids; 13509 Da
Subunit : The nucleosome is a histone octamer containing two molecules each of H2A, H2B, H3 and H4assembled in one H3-H4 heterotetramer and two H2A-H2B heterodimers. The octamer wrapsapproximately 147 bp of DNA. H2A or its variant H2AFV forms an heterodimer with H2B (Bysimilarity)
Subcellular location : Nucleus (By similarity)
Mass spectrometry : Mass=13369.4; Method=Electrospray; Range=2-128; Note=Monoisotopic, not modified;Source=PubMed:16457589;
Secondary accessions : Q59GV8 Q6PK98
Post-translational modifications:
Monoubiquitination of Lys-122 gives a specific tag for epigenetic transcriptional repression (Bysimilarity)1
Acetylated on Lys-5, Lys-8 and Lys-12 during interphase. Acetylation disappears at mitosis (Bysimilarity)1
View phosphorylation sites using PhosphoSite 2
REFSEQ proteins (5 alternative transcripts):
NP_036544.1 NP_619541.1 NP_958844.1 NP_958924.1 NP_958925.1 ENSEMBL proteins: ENSP00000370516 ENSP00000308405 ENSP00000342714 ENSP00000340708 ENSP00000222690 Human Recombinant Proteins                OriGene Purified Recombinant Human Proteins (see all 2 ): H2AFV 3 Gene Ontology (GO) cellular component terms (links to tree view) :
About this table Antibodies for H2AFV: Assays for H2AFV:
Protein
Domains/ Families for H2AFV(According to InterPro , ProtoNet ,
UniProtKB , and/or BLOCKS ,
Sets of similar genes according to GeneDecks )
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Graphical View of Domain Structure for InterPro Entry Q71UI9 ProtoNet protein and cluster: Q71UI9
1 Blocks protein family : IPB002119 Histone H2A UniProtKB/Swiss-Prot: H2AV_HUMAN, Q71UI9 Similarity : Belongs to the histone H2A family
Gene Function for H2AFV
(According to MGI Jun 06 2009, UniProtKB ,
IUBMB ,and/or Genatlas ,
shRNA from
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Sigma-Aldrich , RNAi from
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Clones , and
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SYBR primers from OriGene ,
Cell-based Assays from Millipore ,
Ontologies according to Gene Ontology Consortium 01 Apr 2009 via
Entrez Gene .)
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               OriGene 29mer shRNA kit in GFP-retroviral vectors (see all 5 ): NM_201436 Applied Biosystems Silencer ® siRNAs for H2AFV Sigma-Aldrich siRNA for H2AFV Sigma-Aldrich shRNA for H2AFV Explore Sigma-Aldrich super-pooled esiRNAs                OriGene GFP tagged cDNA clones in CMV expression vector (see all 5 ): NM_012412                                  Myc/DDK tagged cDNA clones in CMV expression vector (see all 5 ): NM_012412                                  untagged cDNA clones in CMV expression vector (see all 5 ): NM_012412  Primers: Browse
Quantitative PCR Central at Invitrogen for Q-PCR LUX™ Primers               OriGene genome-wide validated SYBR primer pairs: NM_012412 UniProtKB/Swiss-Prot: H2AV_HUMAN, Q71UI9 Function : Variant histone H2A which replaces conventional H2A in a subset of nucleosomes.Nucleosomes wrap and compact DNA into chromatin, limiting DNA accessibility to the cellularmachineries which require DNA as a template. Histones thereby play a central role in transcriptionregulation, DNA repair, DNA replication and chromosomal stability. DNA accessibility is regulatedvia a complex set of post-translational modifications of histones, also called histone code, andnucleosome remodeling. May be involved in the formation of constitutive heterochromatin. May berequired for chromosome segregation during cell division (By similarity)
1 Gene Ontology (GO) molecular function term (links to tree view) :
GO ID Qualified GO term Evidence PubMed IDs GO:0003677 DNA binding
IEA --
About this table
Pathways & Interactions for H2AFV
(Pathways according to Invitrogen
(maps by GeneGo ),
Millipore ,
Cell Signaling Technology ,
Sigma-Aldrich ,
KEGG
and/or UniProtKB ,
Sets of similar genes according to GeneDecks ,
Proteins Network according to
SABiosciences ,
Interactions according to 1 UniProtKB ,
2 MINT , and/or
3 STRING ,
with links to IntAct and
Ensembl ,
Ontologies according to Gene Ontology Consortium 01 Apr 2009 via
Entrez Gene .)
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5/10 Interacting proteins for H2AFV (ENSP00000370516 3 ) via UniProtKB, MINT, and/or STRING (see all 10
)About this table 1 Gene Ontology (GO) biological process term (links to tree view) :
GO ID Qualified GO term Evidence PubMed IDs GO:0006334 nucleosome assembly
IEA --
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Drugs & Compounds for H2AFV (Chemical Compounds according to UniProtKB , Enzo Life Sciences ,
Sigma-Aldrich , Tocris Bioscience , and/or
Novoseek and Drugs according to
Enzo Life Sciences and/or
PharmGKB )
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Browse Tocris compounds for H2AFV
Transcripts for H2AFV(GenBank/EMBL/DDBJ Accessions according to
Unigene
(Build 219 Homo sapiens; Jun 2 2009) or GenBank , RefSeq according to Entrez Gene ,
DOTS (version 10), and/or
AceView ,
non coding RNAs according to
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ESTs according to GeneTide ,
exon structure from GeneLoc ,
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               OriGene 29mer shRNA kit in GFP-retroviral vectors (see all 5 ): NM_201436 Sigma-Aldrich siRNA for H2AFV Sigma-Aldrich shRNA for H2AFV Explore Sigma-Aldrich super-pooled esiRNAs
Applied Biosystems Silencer ® siRNAs: NM_012412 NM_138635 NM_201436 NM_201516 NM_201517
REFSEQ mRNAs for H2AFV gene (5 alternative transcripts): NM_012412.4 NM_138635.3 NM_201436.2 NM_201516.2 NM_201517.2
Applied Biosystems TaqMan ® Gene Expression Assays: NM_012412 NM_138635 NM_201436 NM_201516 NM_201517
               OriGene GFP tagged cDNA clones in CMV expression vector (see all 5 ): NM_012412                                  Myc/DDK tagged cDNA clones in CMV expression vector (see all 5 ): NM_012412                                  untagged cDNA clones in CMV expression vector (see all 5 ): NM_012412  
Additional cDNA sequence: AB209001.1 AF081192.1 AK023973.1 AK025785.1 AK129989.1 AL049324.1 AL110212.1 BC000098.2 BC004274.1 BC014885.2 BC070169.1 CR602318.1 CR615278.1
21 DOTS entries : DT.315938 DT.92419758 DT.40276722 DT.121041856 DT.91678836 DT.100752399 DT.102834611 DT.455590 DT.121056042 DT.95147928 DT.40249279 DT.100787929 DT.97824733 DT.121041904 DT.121041877 DT.121041911 DT.95205511 DT.100752397 DT.121041857 DT.121056043 DT.91852611
24/642 AceView cDNA sequences (see all 642
):BG110804 AI611731 BC004274 BU856693 BM715562 CN482679 BM477489 BG478206 AW020017 BM916370 AA279180 CR615278 AW135134 AI760346 BE794116 AW057661 BE551673 BM556787 BG574251 AU121195 BG168182 AI760880 BE794243 AI140183
highest scoring ESTs for H2AFV :AA203494 AA305274 AF081192 AI634570 AK023973 AK129989 AL520811 AU142364 AW007731 AW839014
Unigene Cluster for H2AFV: H2A histone family, member V Hs.488189 [show with all ESTs ] Unigene Representative Sequence: AL110212 GeneLoc Exon Structure 5/7 Alternative Splicing Database (ASD) splice patterns (SP) for H2AFV (see all 7
) ExUns: 1a · 1b ^ 2 ^ 3 ^ 4a · 4b ^ 5a · 5b · 5c ^ 6a · 6b SP1 :           -             SP2 :           -   -   -   -       SP3 :       -     -   -   -   -       SP4 :         -   -             SP5 :     -       -            
About this scheme ECgene alternative splicing isoforms for H2AFV 5 Ensembl transcripts including schematic representations : ENST00000381124
ENST00000308153
ENST00000349299
ENST00000350771
ENST00000222690
Expression for H2AFV
(Experimental results according to
1 GeneNote
and GNF BioGPS ,
probe sets-to-genes annotations according to
2 GeneAnnot ,
3 GeneTide ,
Sets of similar genes according to GeneDecks ,
Electronic Northern calculations according to data from
UniGene (Build 219 Homo sapiens),
SAGE tags according to
CGAP ,
plus additional links to
SOURCE , and/or
GNF
BioGPS , and/or
EXPOLDB , and/or
UniProtKB ,
Expression Assays from
Applied Biosystems
)
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H2AFV expression in normal and diseased human tissues Applied Biosystems TaqMan ® Gene Expression Assays for H2AFV 1 / 2 / 3
12 probe-sets matching H2AFV gene Data from
(Publications) and GNF BioGPS About these images About these images CGAP SAGE TAG: --SOURCE GeneReport for Unigene cluster: Hs.488189 Expression variation in blood from EXPOLDB for H2AFV
Orthologs for H2AFV
(Orthologs according to
1,2 HomoloGene (2 older version, for species not in 1 newer version),
3 euGenes ,
4 SGD
and/or
5 MGI Jun 06 2009,
with possible further links to
Flybase
and/or
WormBase ,
Gene Trees according to Ensembl )
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Orthologs for H2AFV gene from 5/19 species (see all 19
)
About this table Species with no ortholog for H2AFV ENSEMBL Gene Tree for H2AFV Paralogs for H2AFV (Paralogs according to 1 HomoloGene and 2 Ensembl , Pseudogenes according to 3 Pseudogene.org )About This Section
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Paralogs for H2AFV gene H2AFY2 2 H2AFZ 2 H2AFY 2
SNPs/Variants for H2AFV (According to the
1 NCBI SNP Database ,
2 Ensembl ,
3 PupaSUITE , and
UniProtKB ,
Linkage Disequilibrium by HapMap ,
Genotyping Reagents from
Applied Biosystems )
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HapMap Linkage Disequilibrium images for H2AFV (up to first 250kb)
Disorders & Mutations for H2AFV
(in which this Gene is Involved, According to
OMIM, UniProtKB ,
PharmGKB ,
Genatlas , GeneTests ,
Blood group antigen gene mutations by BGMUT ,
HGMD, GAD ,
HuGE Navigator ,
BCGD ,
and/or TGDB .)
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--
Medical News for H2AFV (Possibly Related Articles in
Doctor's Guide )
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--
Publications for H2AFV (in
PubMed .
Associations of this gene to articles via
1 Novoseek ,
2 HGNC ,
3 Entrez Gene ,
4 UniProtKB/Swiss-Prot ,
5 UniProtKB/TrEMBL ,
6 GAD , and/or
7 PharmGKB )
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10/13 PubMed articles for H2AFV gene (see all 13
):
Search for H2AFV
(in PubMed ,
OMIM , and NCBI Bookshelf ) About This Section
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Genome Databases showing H2AFV
(According to
Entrez Gene ,
HGNC ,
AceView ,
euGenes ,
Ensembl ,
miRBase ,
ECgene ,
and/or
H-InvDB )
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Other Databases showing H2AFV
(According to HUGE )
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Specialized Databases showing H2AFV (According to ATLAS , HORDE , IMGT , MTDB, LEIDEN , UniProtKB/Swiss-Prot , and/or UniProtKB/TrEMBL ,Wikipedia and/or GeneReviews via UniProtKB/Swiss-Prot )About This Section
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-- Services for H2AFV (Reagents available from Applied Biosystems , Antibodies and assays by Cell
Signaling Technology , Abcam , Novus Biologicals ,Sigma-Aldrich , R&D Systems , Millipore , Abnova , and/or Invitrogen , Clones available from OriGene ,and/or Invitrogen , Drugs and/or compounds by Sigma-Aldrich , Enzo Life Sciences , and/or Tocris Bioscience )About This Section
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