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Aliases for H2AFV Gene

Aliases for H2AFV Gene

  • H2A Histone Family, Member V 2 3
  • H2A.F/Z 3 4
  • H2AV 3 4
  • Purine-Rich Binding Element Protein B 3
  • Histone H2A.F/Z 3
  • H2A.Z-2 3

External Ids for H2AFV Gene

Previous HGNC Symbols for H2AFV Gene

  • H2AV

Previous GeneCards Identifiers for H2AFV Gene

  • GC07M044610
  • GC07M044642
  • GC07M044833
  • GC07M044751

Summaries for H2AFV Gene

Entrez Gene Summary for H2AFV Gene

  • Histones are basic nuclear proteins that are responsible for the nucleosome structure of the chromosomal fiber in eukaryotes. Nucleosomes consist of approximately 146 bp of DNA wrapped around a histone octamer composed of pairs of each of the four core histones (H2A, H2B, H3, and H4). The chromatin fiber is further compacted through the interaction of a linker histone, H1, with the DNA between the nucleosomes to form higher order chromatin structures. This gene encodes a replication-independent histone that is a member of the histone H2A family. Several transcript variants encoding different isoforms, have been identified for this gene. [provided by RefSeq, Oct 2015]

GeneCards Summary for H2AFV Gene

H2AFV (H2A Histone Family, Member V) is a Protein Coding gene. Among its related pathways are RNA Polymerase I Promoter Opening. GO annotations related to this gene include protein heterodimerization activity. An important paralog of this gene is H2AFZ.

UniProtKB/Swiss-Prot for H2AFV Gene

  • Variant histone H2A which replaces conventional H2A in a subset of nucleosomes. Nucleosomes wrap and compact DNA into chromatin, limiting DNA accessibility to the cellular machineries which require DNA as a template. Histones thereby play a central role in transcription regulation, DNA repair, DNA replication and chromosomal stability. DNA accessibility is regulated via a complex set of post-translational modifications of histones, also called histone code, and nucleosome remodeling. May be involved in the formation of constitutive heterochromatin. May be required for chromosome segregation during cell division (By similarity).

Gene Wiki entry for H2AFV Gene

No data available for Tocris Summary , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for H2AFV Gene

Genomics for H2AFV Gene

Regulatory Elements for H2AFV Gene

Epigenetics Products

  • DNA Methylation CpG Assay Predesigned for Pyrosequencing in human,mouse,rat

Genomic Location for H2AFV Gene

Chromosome:
7
Start:
44,826,791 bp from pter
End:
44,848,126 bp from pter
Size:
21,336 bases
Orientation:
Minus strand

Genomic View for H2AFV Gene

UCSC Golden Path with GeneCards custom track
Cytogenetic band:
Genomic Location for H2AFV Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for H2AFV Gene

Proteins for H2AFV Gene

  • Protein details for H2AFV Gene (UniProtKB/Swiss-Prot)

    Protein Symbol:
    Q71UI9-H2AV_HUMAN
    Recommended name:
    Histone H2A.V
    Protein Accession:
    Q71UI9
    Secondary Accessions:
    • A6NFA8
    • A6NKY0
    • A6NN01
    • A8MQC5
    • Q59GV8
    • Q6PK98

    Protein attributes for H2AFV Gene

    Size:
    128 amino acids
    Molecular mass:
    13509 Da
    Quaternary structure:
    • The nucleosome is a histone octamer containing two molecules each of H2A, H2B, H3 and H4 assembled in one H3-H4 heterotetramer and two H2A-H2B heterodimers. The octamer wraps approximately 147 bp of DNA. H2A or its variant H2AFV forms a heterodimer with H2B (By similarity).
    SequenceCaution:
    • Sequence=BAD92238.1; Type=Erroneous initiation; Evidence={ECO:0000305};

    Three dimensional structures from OCA and Proteopedia for H2AFV Gene

    Alternative splice isoforms for H2AFV Gene

    UniProtKB/Swiss-Prot:

neXtProt entry for H2AFV Gene

Proteomics data for H2AFV Gene at MOPED

Post-translational modifications for H2AFV Gene

  • Acetylated on Lys-5, Lys-8 and Lys-12 during interphase. Acetylation disappears at mitosis (By similarity).
  • Monoubiquitination of Lys-122 gives a specific tag for epigenetic transcriptional repression.
  • Ubiquitination at Lys 122
  • Modification sites at PhosphoSitePlus

No data available for DME Specific Peptides for H2AFV Gene

Domains & Families for H2AFV Gene

Gene Families for H2AFV Gene

HGNC:

Protein Domains for H2AFV Gene

Suggested Antigen Peptide Sequences for H2AFV Gene

Graphical View of Domain Structure for InterPro Entry

Q71UI9

UniProtKB/Swiss-Prot:

H2AV_HUMAN :
  • Belongs to the histone H2A family.
Family:
  • Belongs to the histone H2A family.
genes like me logo Genes that share domains with H2AFV: view

Function for H2AFV Gene

Molecular function for H2AFV Gene

UniProtKB/Swiss-Prot Function:
Variant histone H2A which replaces conventional H2A in a subset of nucleosomes. Nucleosomes wrap and compact DNA into chromatin, limiting DNA accessibility to the cellular machineries which require DNA as a template. Histones thereby play a central role in transcription regulation, DNA repair, DNA replication and chromosomal stability. DNA accessibility is regulated via a complex set of post-translational modifications of histones, also called histone code, and nucleosome remodeling. May be involved in the formation of constitutive heterochromatin. May be required for chromosome segregation during cell division (By similarity).

Gene Ontology (GO) - Molecular Function for H2AFV Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0003674 molecular_function ND --
GO:0003677 DNA binding IBA --
GO:0046982 protein heterodimerization activity IEA --
genes like me logo Genes that share ontologies with H2AFV: view

Phenotypes for H2AFV Gene

GenomeRNAi human phenotypes for H2AFV:
genes like me logo Genes that share phenotypes with H2AFV: view

Inhibitory RNA Products

  • Predesigned siRNA for gene silencing in human,mouse,rat for H2AFV

In Situ Assay Products

Flow Cytometry Products

No data available for Enzyme Numbers (IUBMB) , Animal Models , Transcription Factor Targets and HOMER Transcription for H2AFV Gene

Localization for H2AFV Gene

Subcellular locations from UniProtKB/Swiss-Prot for H2AFV Gene

Nucleus. Chromosome.

Subcellular locations from

COMPARTMENTS
Jensen Localization Image for H2AFV Gene COMPARTMENTS Subcellular localization image for H2AFV gene
Compartment Confidence
extracellular 5
nucleus 5
cytoskeleton 1

Gene Ontology (GO) - Cellular Components for H2AFV Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0000786 nucleosome IEA --
GO:0000790 nuclear chromatin IBA --
GO:0005634 nucleus IDA 16457589
GO:0070062 extracellular exosome IDA 23533145
genes like me logo Genes that share ontologies with H2AFV: view

Pathways & Interactions for H2AFV Gene

genes like me logo Genes that share pathways with H2AFV: view

Pathways by source for H2AFV Gene

2 KEGG pathways for H2AFV Gene

Gene Ontology (GO) - Biological Process for H2AFV Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0006325 chromatin organization IBA --
GO:0006342 chromatin silencing IBA --
GO:0008150 biological_process ND --
genes like me logo Genes that share ontologies with H2AFV: view

No data available for SIGNOR curated interactions for H2AFV Gene

Drugs & Compounds for H2AFV Gene

No Compound Related Data Available

Transcripts for H2AFV Gene

Unigene Clusters for H2AFV Gene

H2A histone family, member V:
Representative Sequences:

Inhibitory RNA Products

  • Predesigned siRNA for gene silencing in human,mouse,rat for H2AFV

Flow Cytometry Products

Alternative Splicing Database (ASD) splice patterns (SP) for H2AFV Gene

ExUns: 1a · 1b ^ 2 ^ 3 ^ 4a · 4b ^ 5a · 5b · 5c ^ 6a · 6b
SP1: -
SP2: - - - -
SP3: - - - - -
SP4: - -
SP5: - -
SP6:
SP7: - -

Relevant External Links for H2AFV Gene

GeneLoc Exon Structure for
H2AFV
ECgene alternative splicing isoforms for
H2AFV

Expression for H2AFV Gene

mRNA expression in normal human tissues for H2AFV Gene

mRNA expression in embryonic tissues and stem cells from LifeMap Discovery

Protein differential expression in normal tissues from HIPED for H2AFV Gene

This gene is overexpressed in Monocytes (23.2), Tlymphocyte (8.3), and Blymphocyte (8.2).

Integrated Proteomics: protein expression in normal tissues and cell lines from ProteomicsDB, PaxDb, and MOPED for H2AFV Gene



SOURCE GeneReport for Unigene cluster for H2AFV Gene Hs.488189

genes like me logo Genes that share expression patterns with H2AFV: view

Protein tissue co-expression partners for H2AFV Gene

Primer Products

In Situ Assay Products

No data available for mRNA differential expression in normal tissues and mRNA Expression by UniProt/SwissProt for H2AFV Gene

Orthologs for H2AFV Gene

This gene was present in the common ancestor of eukaryotes.

Orthologs for H2AFV Gene

Organism Taxonomy Gene Similarity Type Details
cow
(Bos Taurus)
Mammalia H2AFV 35
  • 94.27 (n)
  • 100 (a)
H2AFV 36
  • 100 (a)
OneToOne
mouse
(Mus musculus)
Mammalia H2afv 35
  • 91.67 (n)
  • 100 (a)
H2afv 16
H2afv 36
  • 100 (a)
OneToOne
chimpanzee
(Pan troglodytes)
Mammalia H2AFV 35
  • 99.74 (n)
  • 100 (a)
H2AFV 36
  • 100 (a)
OneToOne
rat
(Rattus norvegicus)
Mammalia LOC685909 35
  • 92.71 (n)
  • 100 (a)
dog
(Canis familiaris)
Mammalia H2AFV 36
  • 100 (a)
OneToOne
oppossum
(Monodelphis domestica)
Mammalia H2AFV 36
  • 100 (a)
OneToOne
platypus
(Ornithorhynchus anatinus)
Mammalia H2AFV 36
  • 100 (a)
OneToOne
chicken
(Gallus gallus)
Aves H2AFV 36
  • 97 (a)
OneToOne
lizard
(Anolis carolinensis)
Reptilia H2AFV 36
  • 100 (a)
OneToOne
tropical clawed frog
(Silurana tropicalis)
Amphibia h2afv 35
  • 84.11 (n)
  • 100 (a)
Str.1584 35
African clawed frog
(Xenopus laevis)
Amphibia Xl.24058 35
zebrafish
(Danio rerio)
Actinopterygii h2afva 35
  • 80.47 (n)
  • 100 (a)
h2afva 36
  • 100 (a)
OneToMany
h2afvb 36
  • 85 (a)
OneToMany
rainbow trout
(Oncorhynchus mykiss)
Actinopterygii Omy.14060 35
African malaria mosquito
(Anopheles gambiae)
Insecta AgaP_AGAP000306 35
  • 74.25 (n)
  • 98.37 (a)
fruit fly
(Drosophila melanogaster)
Insecta His2Av 35
  • 74.86 (n)
  • 98.36 (a)
His2Av 36
  • 85 (a)
OneToMany
worm
(Caenorhabditis elegans)
Secernentea htz-1 35
  • 70.46 (n)
  • 89.43 (a)
htz-1 36
  • 74 (a)
OneToMany
A. gosspyii yeast
(Ashbya gossypii)
Saccharomycetes AGOS_ACL017C 35
  • 63.74 (n)
  • 71.93 (a)
K. lactis yeast
(Kluyveromyces lactis)
Saccharomycetes KLLA0C05918g 35
  • 62.07 (n)
  • 72.41 (a)
baker's yeast
(Saccharomyces cerevisiae)
Saccharomycetes HTZ1 35
  • 65.29 (n)
  • 72.73 (a)
HTZ1 36
  • 61 (a)
OneToMany
HTZ1 38
thale cress
(Arabidopsis thaliana)
eudicotyledons HTA8 35
  • 69.3 (n)
  • 84.21 (a)
soybean
(Glycine max)
eudicotyledons Gma.3316 35
Alicante grape
(Vitis vinifera)
eudicotyledons Vvi.12459 35
rice
(Oryza sativa)
Liliopsida Os03g0743400 35
  • 72.6 (n)
  • 86.44 (a)
wheat
(Triticum aestivum)
Liliopsida Ta.22962 35
bread mold
(Neurospora crassa)
Ascomycetes NCU05347 35
  • 60.94 (n)
  • 70.31 (a)
fission yeast
(Schizosaccharomyces pombe)
Schizosaccharomycetes pht1 35
  • 61.62 (n)
  • 73.95 (a)
sea squirt
(Ciona savignyi)
Ascidiacea CSA.7971 36
  • 83 (a)
OneToMany
Species with no ortholog for H2AFV:
  • Actinobacteria (Mycobacterium tuberculosis)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)

Evolution for H2AFV Gene

ENSEMBL:
Gene Tree for H2AFV (if available)
TreeFam:
Gene Tree for H2AFV (if available)

Paralogs for H2AFV Gene

Paralogs for H2AFV Gene

Pseudogenes.org Pseudogenes for H2AFV Gene

genes like me logo Genes that share paralogs with H2AFV: view

Variants for H2AFV Gene

Sequence variations from dbSNP and Humsavar for H2AFV Gene

SNP ID Clin Chr 07 pos Sequence Context AA Info Type MAF
rs2897 -- 44,827,105(+) GAAAA(A/G)AAGTG utr-variant-3-prime
rs2898 -- 44,827,034(+) TTGTC(A/G)TTTGG utr-variant-3-prime
rs7016 -- 44,827,233(-) AAATA(A/C)AACTG utr-variant-3-prime
rs1054214 -- 44,832,349(-) CATGT(C/T)TGTGT intron-variant
rs1058056 -- 44,828,780(-) GACCC(C/T)GAGCA utr-variant-3-prime

Structural Variations from Database of Genomic Variants (DGV) for H2AFV Gene

Variant ID Type Subtype PubMed ID
nsv830985 CNV Loss 17160897
esv2734326 CNV Deletion 23290073
nsv5723 CNV Insertion 18451855

Variation tolerance for H2AFV Gene

Residual Variation Intolerance Score: 47.7% of all genes are more intolerant (likely to be disease-causing)
Gene Damage Index Score: 0.05; 1.08% of all genes are more intolerant (likely to be disease-causing)

Relevant External Links for H2AFV Gene

HapMap Linkage Disequilibrium report
H2AFV

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot for H2AFV Gene

Disorders for H2AFV Gene

Relevant External Links for H2AFV

Atlas of Genetics and Cytogenetics in Oncology and Haematology:
H2AFV
genes like me logo Genes that share disorders with H2AFV: view

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for H2AFV Gene

Publications for H2AFV Gene

  1. A comprehensive view of the epigenetic landscape part I: DNA methylation, passive and active DNA demethylation pathways and histone variants. (PMID: 25362550) Sadakierska-Chudy A. … Filip M. (Neurotox Res 2015) 67
  2. Integrative analysis of kinase networks in TRAIL-induced apoptosis provides a source of potential targets for combination therapy. (PMID: 25852190) So J. … Colwill K. (Sci Signal 2015) 67
  3. Identifying biological pathways that underlie primordial short stature using network analysis. (PMID: 24711643) Hanson D. … Clayton P.E. (J. Mol. Endocrinol. 2014) 67
  4. Structural polymorphism in the L1 loop regions of human H2A.Z.1 and H2A.Z.2. (PMID: 24311584) Horikoshi N. … Kurumizaka H. (Acta Crystallogr. D Biol. Crystallogr. 2013) 67
  5. In-depth proteomic analyses of exosomes isolated from expressed prostatic secretions in urine. (PMID: 23533145) Principe S. … Drake R.R. (Proteomics 2013) 67

Products for H2AFV Gene

Sources for H2AFV Gene

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