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Aliases for H1FX-AS1 Gene

Subcategory (RNA class) for H1FX-AS1 Gene

non-coding RNA

Quality Score for this RNA gene is

13

Aliases for H1FX-AS1 Gene

  • H1FX Antisense RNA 1 2 3 4 5
  • H1FX Antisense RNA 1 (Non-Protein Coding) 2 3
  • C3orf47 3 4
  • Chromosome 3 Open Reading Frame 47 2

External Ids for H1FX-AS1 Gene

Previous HGNC Symbols for H1FX-AS1 Gene

  • C3orf47

Previous GeneCards Identifiers for H1FX-AS1 Gene

  • GC03P129034

Summaries for H1FX-AS1 Gene

GeneCards Summary for H1FX-AS1 Gene

H1FX-AS1 (H1FX Antisense RNA 1) is an RNA Gene, and is affiliated with the non-coding RNA class.

No data available for Entrez Gene Summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for H1FX-AS1 Gene

Genomics for H1FX-AS1 Gene

Regulatory Elements for H1FX-AS1 Gene

Enhancers for H1FX-AS1 Gene
GeneHancer Identifier Score Enhancer Sources TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Other Gene Targets for Enhancer

Enhancers around H1FX-AS1 on UCSC Golden Path with GeneCards custom track

Promoters for H1FX-AS1 Gene
Ensembl Regulatory Elements (ENSRs) TSS Distance (bp) Size (bp) Binding Sites for Transcription Factors within promoters

ENSRs around H1FX-AS1 on UCSC Golden Path with GeneCards custom track

Genomic Location for H1FX-AS1 Gene

Chromosome:
3
Start:
129,315,392 bp from pter
End:
129,326,225 bp from pter
Size:
10,834 bases
Orientation:
Plus strand

Genomic View for H1FX-AS1 Gene

Genes around H1FX-AS1 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
H1FX-AS1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for H1FX-AS1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for H1FX-AS1 Gene

Proteins for H1FX-AS1 Gene

  • Protein details for H1FX-AS1 Gene (UniProtKB/Swiss-Prot)

    Protein Symbol:
    Q4G0G2-H1AS1_HUMAN
    Recommended name:
    Putative uncharacterized protein H1FX-AS1
    Protein Accession:
    Q4G0G2

    Protein attributes for H1FX-AS1 Gene

    Size:
    97 amino acids
    Molecular mass:
    11005 Da
    Quaternary structure:
    No Data Available

neXtProt entry for H1FX-AS1 Gene

Proteomics data for H1FX-AS1 Gene at MOPED

Post-translational modifications for H1FX-AS1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for H1FX-AS1 Gene

Domains & Families for H1FX-AS1 Gene

Protein Domains for H1FX-AS1 Gene

ProtoNet:

Graphical View of Domain Structure for InterPro Entry

genes like me logo Genes that share domains with H1FX-AS1: view

No data available for Gene Families , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for H1FX-AS1 Gene

Function for H1FX-AS1 Gene

miRNA for H1FX-AS1 Gene

miRTarBase miRNAs that target H1FX-AS1

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , Transcription Factor Targets and HOMER Transcription for H1FX-AS1 Gene

Localization for H1FX-AS1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for H1FX-AS1 Gene

Pathways & Interactions for H1FX-AS1 Gene

SuperPathways for H1FX-AS1 Gene

No Data Available

Interacting Proteins for H1FX-AS1 Gene

Gene Ontology (GO) - Biological Process for H1FX-AS1 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for H1FX-AS1 Gene

Drugs & Compounds for H1FX-AS1 Gene

No Compound Related Data Available

Transcripts for H1FX-AS1 Gene

mRNA/cDNA for H1FX-AS1 Gene

Unigene Clusters for H1FX-AS1 Gene

H1FX antisense RNA 1:
Representative Sequences:

Alternative Splicing Database (ASD) splice patterns (SP) for H1FX-AS1 Gene

No ASD Table

Relevant External Links for H1FX-AS1 Gene

GeneLoc Exon Structure for
H1FX-AS1
ECgene alternative splicing isoforms for
H1FX-AS1

Expression for H1FX-AS1 Gene

mRNA expression in normal human tissues for H1FX-AS1 Gene

SOURCE GeneReport for Unigene cluster for H1FX-AS1 Gene Hs.450096

genes like me logo Genes that share expression patterns with H1FX-AS1: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , mRNA Expression by UniProt/SwissProt and Protein tissue co-expression partners for H1FX-AS1 Gene

Orthologs for H1FX-AS1 Gene

Evolution for H1FX-AS1 Gene

ENSEMBL:
Gene Tree for H1FX-AS1 (if available)
TreeFam:
Gene Tree for H1FX-AS1 (if available)

No data available for Orthologs for H1FX-AS1 Gene

Paralogs for H1FX-AS1 Gene

No data available for Paralogs for H1FX-AS1 Gene

Variants for H1FX-AS1 Gene

Sequence variations from dbSNP and Humsavar for H1FX-AS1 Gene

SNP ID Clin Chr 03 pos Sequence Context AA Info Type
rs9816623 -- 129,323,873(+) TGGCC(A/G)TCTGT intron-variant
rs10934880 -- 129,324,566(+) TTAGC(C/T)GGGCG nc-transcript-variant
rs10934881 -- 129,324,739(+) CCACC(C/T)GGAAG downstream-variant-500B
rs6773906 -- 129,321,871(+) GCCCT(C/T)GCCCT intron-variant
rs58391073 -- 129,324,476(+) GAGGC(C/T)GAGGC nc-transcript-variant

Structural Variations from Database of Genomic Variants (DGV) for H1FX-AS1 Gene

Variant ID Type Subtype PubMed ID
nsv829722 CNV Gain 17160897
nsv877474 CNV Loss 21882294
nsv520607 CNV Gain+Loss 19592680
nsv822244 CNV Gain 20364138
nsv3997 CNV Loss 18451855

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Variation tolerance and Relevant External Links for H1FX-AS1 Gene

Disorders for H1FX-AS1 Gene

Relevant External Links for H1FX-AS1

Atlas of Genetics and Cytogenetics in Oncology and Haematology:
H1FX-AS1

No disorders were found for H1FX-AS1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for H1FX-AS1 Gene

Publications for H1FX-AS1 Gene

  1. The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC). (PMID: 15489334) Gerhard D.S. … Malek J. (Genome Res. 2004) 3 4 67
  2. Complete sequencing and characterization of 21,243 full-length human cDNAs. (PMID: 14702039) Ota T. … Sugano S. (Nat. Genet. 2004) 2 3
  3. Diversification of transcriptional modulation: large-scale identification and characterization of putative alternative promoters of human genes. (PMID: 16344560) Kimura K. … Sugano S. (Genome Res. 2006) 3
  4. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg R.L. … Marra M.A. (Proc. Natl. Acad. Sci. U.S.A. 2002) 3
  5. Normalization and subtraction: two approaches to facilitate gene discovery. (PMID: 8889548) Bonaldo M.F. … Soares M.B. (Genome Res. 1996) 3

Products for H1FX-AS1 Gene

Sources for H1FX-AS1 Gene

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