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Aliases for H1FX-AS1 Gene

Subcategory (RNA class) for H1FX-AS1 Gene

non-coding RNA

Quality Score for this RNA gene is

13

Aliases for H1FX-AS1 Gene

  • H1FX Antisense RNA 1 2 3 4 5
  • H1FX Antisense RNA 1 (Non-Protein Coding) 2 3
  • C3orf47 3 4
  • Chromosome 3 Open Reading Frame 47 2

External Ids for H1FX-AS1 Gene

Previous HGNC Symbols for H1FX-AS1 Gene

  • C3orf47

Previous GeneCards Identifiers for H1FX-AS1 Gene

  • GC03P129034

Summaries for H1FX-AS1 Gene

GeneCards Summary for H1FX-AS1 Gene

H1FX-AS1 (H1FX Antisense RNA 1) is an RNA Gene, and is affiliated with the non-coding RNA class.

No data available for Entrez Gene Summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for H1FX-AS1 Gene

Genomics for H1FX-AS1 Gene

Regulatory Elements for H1FX-AS1 Gene

Enhancers for H1FX-AS1 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH03F129438 1.2 ENCODE 21.3 +125.3 125331 4.5 HDGF PKNOX1 ARNT CREB3L1 ARID4B SIN3A FEZF1 DMAP1 ZNF2 YY1 RPL32P3 H1FX-AS1 ISY1 PLXND1 RPS15AP16 IFT122 RHO MBD4 GC03P129485 GC03P129487
GH03F129159 1.2 ENCODE 21.3 -153.8 -153839 4.4 MLX CREB3L1 FEZF1 DMAP1 YY1 SLC30A9 ZNF143 SP3 NFYC TBX21 H1FX-AS1 RPL32P3 ISY1 RPS15AP16 ENSG00000244932 ENSG00000273437
GH03F128778 1.3 Ensembl ENCODE 19.2 -528.2 -528162 16.9 PKNOX1 WRNIP1 ZFP64 ARID4B SIN3A BRCA1 ZNF2 YY1 GLIS2 FOS RPL32P3 ENSG00000244932 ISY1 EEFSEC LOC653712 H1FX-AS1 IFT122 ENSG00000250796 ENSG00000207130 RAB7A
GH03F129611 1.7 FANTOM5 Ensembl ENCODE 11.4 +304.8 304770 18.1 HDGF MLX ARID4B DMAP1 YY1 ZNF143 FOS ZNF263 SP3 SP5 RPL32P3 RNY3P13 H1FX-AS1 RHO PLXND1 IFT122 ENSG00000203644 TMCC1-AS1 MBD4 GC03P129621
GH03F128407 1.7 FANTOM5 Ensembl ENCODE 11.4 -902.3 -902265 10.7 HDGF PKNOX1 ARNT CREB3L1 FOS DEK JUNB REST SMARCB1 MEF2D GATA2 DNAJB8 H1FX-AS1 DNAJB8-AS1 RPL32P3 EEFSEC LINC01565 GC03M128409 GC03P128380
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around H1FX-AS1 on UCSC Golden Path with GeneCards custom track

Promoters for H1FX-AS1 Gene
Ensembl Regulatory Elements (ENSRs) TSS Distance (bp) Size (bp) Binding Sites for Transcription Factors within promoters
ENSR00001373574 408 3201 PKNOX1 WRNIP1 ARID4B SIN3A DMAP1 ZNF2 YY1 SLC30A9 ZNF207 SP3

Genomic Location for H1FX-AS1 Gene

Chromosome:
3
Start:
129,315,392 bp from pter
End:
129,326,225 bp from pter
Size:
10,834 bases
Orientation:
Plus strand

Genomic View for H1FX-AS1 Gene

Genes around H1FX-AS1 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
H1FX-AS1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for H1FX-AS1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for H1FX-AS1 Gene

Proteins for H1FX-AS1 Gene

  • Protein details for H1FX-AS1 Gene (UniProtKB/Swiss-Prot)

    Protein Symbol:
    Q4G0G2-H1AS1_HUMAN
    Recommended name:
    Putative uncharacterized protein H1FX-AS1
    Protein Accession:
    Q4G0G2

    Protein attributes for H1FX-AS1 Gene

    Size:
    97 amino acids
    Molecular mass:
    11005 Da
    Quaternary structure:
    No Data Available

neXtProt entry for H1FX-AS1 Gene

Post-translational modifications for H1FX-AS1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for H1FX-AS1 Gene

Domains & Families for H1FX-AS1 Gene

Protein Domains for H1FX-AS1 Gene

ProtoNet:

Graphical View of Domain Structure for InterPro Entry

genes like me logo Genes that share domains with H1FX-AS1: view

No data available for Gene Families , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for H1FX-AS1 Gene

Function for H1FX-AS1 Gene

Animal Model Products

miRNA for H1FX-AS1 Gene

miRTarBase miRNAs that target H1FX-AS1

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , Transcription Factor Targets and HOMER Transcription for H1FX-AS1 Gene

Localization for H1FX-AS1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for H1FX-AS1 Gene

Pathways & Interactions for H1FX-AS1 Gene

SuperPathways for H1FX-AS1 Gene

No Data Available

Interacting Proteins for H1FX-AS1 Gene

Gene Ontology (GO) - Biological Process for H1FX-AS1 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for H1FX-AS1 Gene

Transcripts for H1FX-AS1 Gene

mRNA/cDNA for H1FX-AS1 Gene

Unigene Clusters for H1FX-AS1 Gene

H1FX antisense RNA 1:
Representative Sequences:

Alternative Splicing Database (ASD) splice patterns (SP) for H1FX-AS1 Gene

No ASD Table

Relevant External Links for H1FX-AS1 Gene

GeneLoc Exon Structure for
H1FX-AS1
ECgene alternative splicing isoforms for
H1FX-AS1

Expression for H1FX-AS1 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for H1FX-AS1 Gene

SOURCE GeneReport for Unigene cluster for H1FX-AS1 Gene:

Hs.450096
genes like me logo Genes that share expression patterns with H1FX-AS1: view

Primer Products

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners and mRNA Expression by UniProt/SwissProt for H1FX-AS1 Gene

Orthologs for H1FX-AS1 Gene

Evolution for H1FX-AS1 Gene

ENSEMBL:
Gene Tree for H1FX-AS1 (if available)
TreeFam:
Gene Tree for H1FX-AS1 (if available)

No data available for Orthologs for H1FX-AS1 Gene

Paralogs for H1FX-AS1 Gene

No data available for Paralogs for H1FX-AS1 Gene

Variants for H1FX-AS1 Gene

Sequence variations from dbSNP and Humsavar for H1FX-AS1 Gene

SNP ID Clin Chr 03 pos Sequence Context AA Info Type
rs10345 -- 129,315,213(-) TTTTT(G/T)TTTTT upstream-variant-2KB, utr-variant-3-prime
rs10934880 -- 129,324,566(+) TTAGC(C/T)GGGCG nc-transcript-variant
rs10934881 -- 129,324,739(+) CCACC(C/T)GGAAG intron-variant
rs111249161 -- 129,316,248(+) CCACT(A/G)GCGCC upstream-variant-2KB, utr-variant-5-prime
rs111339123 -- 129,320,475(+) AGGGT(G/T)GGGGA intron-variant

Structural Variations from Database of Genomic Variants (DGV) for H1FX-AS1 Gene

Variant ID Type Subtype PubMed ID
nsv829722 CNV gain 17160897
nsv822244 CNV gain 20364138
nsv591651 CNV loss 21841781
nsv520607 CNV gain+loss 19592680
nsv472812 CNV novel sequence insertion 20440878
nsv3997 CNV deletion 18451855
esv3346540 CNV duplication 20981092

Relevant External Links for H1FX-AS1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
H1FX-AS1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for H1FX-AS1 Gene

Disorders for H1FX-AS1 Gene

Relevant External Links for H1FX-AS1

Atlas of Genetics and Cytogenetics in Oncology and Haematology:
H1FX-AS1

No disorders were found for H1FX-AS1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for H1FX-AS1 Gene

Publications for H1FX-AS1 Gene

  1. Complete sequencing and characterization of 21,243 full-length human cDNAs. (PMID: 14702039) Ota T. … Sugano S. (Nat. Genet. 2004) 2 3 64
  2. The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC). (PMID: 15489334) Gerhard D.S. … Malek J. (Genome Res. 2004) 3 4 64
  3. Diversification of transcriptional modulation: large-scale identification and characterization of putative alternative promoters of human genes. (PMID: 16344560) Kimura K. … Sugano S. (Genome Res. 2006) 3 64
  4. The DNA sequence, annotation and analysis of human chromosome 3. (PMID: 16641997) Muzny D.M. … Gibbs R.A. (Nature 2006) 4 64
  5. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg R.L. … Marra M.A. (Proc. Natl. Acad. Sci. U.S.A. 2002) 3 64

Products for H1FX-AS1 Gene

Sources for H1FX-AS1 Gene

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